Prof. Jonathan A. Eisen

Correction for Dietz et al., “2019 Novel Coronavirus (COVID-19) Pandemic: Built Environ...

• mSystems
• May 2020

Environmental control on the distribution of metabolic strategies of benthic microbial ...

• PLoS ONE
• April 2020

2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce ...

• mSystems
• April 2020

All small things considered: the diversity of fungi, bacteria and oomycota isolated fro...

• March 2020

Author Correction: Metagenome-assembled genomes provide new insight into the microbial ...

• Scientific Reports
• February 2020

Teredinibacter waterburyi sp. nov., a marine, cellulolytic endosymbiotic bacterium isol...

• INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
• February 2020

Whole genome sequence analysis reveals the broad distribution of the RtxA type 1 secret...

• PLoS ONE
• January 2020

Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac sec...

• PLoS ONE
• September 2019

Whole genome sequence analysis reveals broad distribution of the RtxA type 1 secretion ...

• September 2019

Characterization of the mycobiome of the seagrass, Zostera marina, reveals putative ass...

• August 2019

Bacteria isolated from bengal cat (Felis catus × Prionailurus bengalensis) anal sac sec...

• May 2019

Metagenome-assembled genomes provide new insight into the microbial diversity of two th...

• Scientific Reports
• February 2019

Bacterial communities associated with cell phones and shoes

• February 2019

Bacterial communities associated with cell phones and shoes

• February 2019

Network analysis to evaluate the impact of research funding on research community conso...

• January 2019

Marine probiotics: increasing coral resistance to bleaching through microbiome manipula...

• The ISME Journal
• December 2018

The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Viru...

• mSphere
• October 2018

There and back again: metagenome-assembled genomes provide new insights into two therma...

• August 2018

Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotro...

• PLoS Biology
• August 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metageno...

• Nature Biotechnology
• July 2018

Insights into the evolution of oxygenic photosynthesis from a phylogenetically novel, l...

• June 2018

Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota

• PeerJ
• May 2018

American Gut: an Open Platform for Citizen Science Microbiome Research

• mSystems
• May 2018

Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota

• May 2018

Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota

• May 2018

Characterization of shifts of koala (Phascolarctos cinereus) intestinal microbial commu...

• PeerJ
• March 2018

Correction: A microbial survey of the International Space Station (ISS)

• PeerJ
• February 2018

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metageno...

• Nature Biotechnology
• February 2018

A microbial survey of the International Space Station (ISS)

• PeerJ
• December 2017

Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla

• Frontiers in Microbiology
• November 2017

The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates o...

• Frontiers in Microbiology
• September 2017

Microbiome succession during ammonification in eelgrass bed sediments

• PeerJ
• August 2017

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled ...

• Nature Biotechnology
• August 2017

1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree ...

• Nature Biotechnology
• June 2017

Complete Genome Sequence of Dolosigranulum pigrum from a Patient with Interstitial Lung...

• Genome Announcements
• May 2017

Microbiome succession during ammonification in eelgrass bed sediments

• April 2017

Microbiome succession during ammonification in eelgrass bed sediments

• April 2017

Gut Check: The evolution of an educational board game

• PLoS Biology
• April 2017

Complete Genome Sequence of a Paenalcaligenes hominis Strain Isolated from a Paraplegic...

• Genome Announcements
• April 2017

Microbial communities in sediment from Zostera marina patches, but not the Z. marina le...

• PeerJ
• April 2017

Global-Scale Structure of the Eelgrass Microbiome

• Applied and Environmental Microbiology
• April 2017

Draft Genome Sequences of Pseudomonas moraviensis UCD-KL30, Vibrio ostreicida UCD-KL16,...

• Genome Announcements
• March 2017

Research priorities for harnessing plant microbiomes in sustainable agriculture

• PLoS Biology
• March 2017

Draft Genome Sequence of Propionibacterium avidum Strain UCD-PD2 Isolated from a Feline...

• Genome Announcements
• March 2017

Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated...

• Future Microbiology
• March 2017

Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infect...

• mSystems
• February 2017

Draft Genome Sequences of Dermacoccus nishinomiyaensis Strains UCD-KPL2534 and UCD-KPL2...

• Genome Announcements
• February 2017

Draft Genome Sequence of Arthrobacter sp. Strain UCD-GKA (Phylum Actinobacteria)

• Genome Announcements
• February 2017

Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type...

• Standards in Genomic Sciences
• February 2017

Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylo...

• Standards in Genomic Sciences
• January 2017

Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations of Shi...

• mSphere
• December 2016

Draft Genome Sequence of Enterococcus faecalis ...

• Genome Announcements
• December 2016

Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections

• PLoS ONE
• December 2016

Global-scale structure of the eelgrass microbiome

• November 2016

Ten questions concerning the microbiomes of buildings

• Building and Environment
• November 2016

Draft Genome Sequence of Tenacibaculum soleae U...

• Genome Announcements
• October 2016

Draft Genome Sequence of Gordonia sp. Strain UC...

• Genome Announcements
• October 2016

Draft Genome Sequence of Curtobacterium sp. Str...

• Genome Announcements
• October 2016

Genes Required for the Anti-fungal Activity of a Bacterial Endophyte Isolated from a Co...

• Frontiers in Microbiology
• October 2016

Seagrass Microbiome Sample Collection and Preservation v1 (protocols.io.fxzbpp6)

• September 2016

Root-hair endophyte stacking in finger millet creates a physicochemical barrier to trap...

• Nature Microbiology
• September 2016

Root hair-endophyte stacking (RHESt) in an ancient Afro-Indian crop creates an unusual ...

• August 2016

Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus...

• Genome Announcements
• August 2016

Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations ofShig...

• July 2016

The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International...

• Microbiome
• June 2016

Draft Genome Sequence ofKlebsiella pneumoniaeUCD-JA29 Isolated from a Patient with Sepsis

• Genome Announcements
• May 2016

Growth of 48 built environment bacterial isolates on board the International Space Stat...

• PeerJ
• March 2016

Draft Genome Sequences of Two Pseudoalteromonas porphyrae ...

• Genome Announcements
• March 2016

Draft Genome Sequence of Cobetia sp. UCD-24C, I...

• Genome Announcements
• March 2016

Draft Genome Sequences of Two Pseudoalteromonas ...

• Genome Announcements
• February 2016

Draft Genome Sequences of TwoVibrio splendidusStrains, Isolated from Seagrass Sediment

• Genome Announcements
• February 2016

Draft Genome Sequences of Acinetobacter baumannii ...

• Genome Announcements
• January 2016

Draft Genome Sequence of Klebsiella pneumoniae ...

• Genome Announcements
• January 2016

Additional Draft Genome Sequences of Escherichia coli ...

• Genome Announcements
• January 2016

Growth of 48 built environment bacterial isolates on board the International Space Stat...

• January 2016

Growth of 48 built environment bacterial isolates on board the International Space Stat...

• January 2016

PHYLOGENETIC DIVERSITY OF THE MICROBIAL MATS IN LAKE FRYXELL, ANTARCTICA

• January 2016

Transcriptomes of post-mitotic neurons identify the usage of alternative pathways durin...

• BMC Genomics
• December 2015

Draft Genome Sequence of Porphyrobacter mercurialis ...

• Genome Announcements
• November 2015

Draft Genome Sequence of Bacillus safensis JPL-...

• Genome Announcements
• November 2015

Draft Genome Sequence of Bacillus vietnamensis ...

• Genome Announcements
• November 2015

Microbial Mat Communities along an Oxygen Gradient in a Perennially Ice-Covered Antarct...

• Applied and Environmental Microbiology
• November 2015

Comparative Genomics of the Genus Porphyromonas Identifies Adaptations for Heme Synthe...

• Genome Biology and Evolution
• November 2015

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes

• PLoS Computational Biology
• November 2015

Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended descript...

• PeerJ
• November 2015

Draft Genome Sequence of Pseudoalteromonas tetraodonis ...

• Genome Announcements
• November 2015

Draft Genome Sequence of Planomicrobium glaciei ...

• Genome Announcements
• October 2015

Automated and accurate estimation of gene family abundance from shotgun metagenomes

• July 2015

The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Rese...

• Applied and Environmental Microbiology
• June 2015

Prediction of remission in obsessive compulsive disorder using a novel machine learning...

• International Journal of Methods in Psychiatric Research
• May 2015

Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of ...

• Standards in Genomic Sciences
• May 2015

Swabs to genomes: a comprehensive workflow

• PeerJ
• May 2015

Forensic analysis of the microbiome of phones and shoes

• Microbiome
• May 2015

Deep-sea hydrothermal vent bacteria related to human pathogenicVibriospecies

• Proceedings of the National Academy of Sciences
• May 2015

ThinkLab as a vetting system for traditional grants

• April 2015

Draft Genome Sequences of 26 Porphyromonas Stra...

• Genome Announcements
• April 2015

Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoni...

• Frontiers in Cellular and Infection Microbiology
• April 2015

Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yell...

• Genome Announcements
• January 2015

Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium co...

• Genome Announcements
• January 2015

Swabs to genomes: a comprehensive workflow

• January 2015

Swabs to genomes: a comprehensive workflow

• January 2015

Draft Genome Sequence of Enterobacter sp. Strain UCD-UG_FMILLET (PhylumProteobacteria)

• Genome Announcements
• January 2015

Draft Genome Sequence of Burkholderia gladioli Strain UCD-UG_CHAPALOTE (Phylum ...

• Genome Announcements
• January 2015

Structure, variation, and assembly of the root-associated microbiomes of rice

• Proceedings of the National Academy of Sciences
• January 2015

11+ things everyone needs to know about microbes

• The Winnower
• January 2015

Methylisothiazolinone in household items - a growing (or well, killing) problem #germop...

• The Winnower
• January 2015

What does the term microbiome mean? And where did it come from? A bit of a surprise ..

• The Winnower
• January 2015

Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients

• Genome Announcements
• December 2014

The microbes we eat: abundance and taxonomy of microbes consumed in a day’s worth of me...

• PeerJ
• December 2014

Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies f...

• PLoS Genetics
• November 2014

Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1

• Genome Announcements
• August 2014

Swabs to Genomes: A Comprehensive Workflow

• August 2014

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains

• PLoS Biology
• August 2014

Draft Genome Sequence of the Endosymbiont "Candidatus Ruthia magnifica" UCD-CM (Phylum ...

• Genome Announcements
• July 2014

microBEnet: Lessons Learned from Building an Interdisciplinary Scientific Community in ...

• PLoS Biology
• June 2014

Play up your lab’s leadership in open science!

• June 2014

Microbial resistance to disinfectants in animal shelters

• June 2014

Microbial resistance to disinfectants in animal shelters

• June 2014

Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximi...

• PeerJ
• May 2014

Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Ski...

• Genome Announcements
• May 2014

Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265

• Genome Announcements
• May 2014

Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfatar...

• Standards in Genomic Sciences
• May 2014

Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Iso...

• Genome Announcements
• April 2014

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 22...

• Standards in Genomic Sciences
• March 2014

Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximi...

• February 2014

Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximi...

• February 2014

Microscale sulfur cycling in the phototrophic pink berry consortia of the S...

• Environmental Microbiology
• February 2014

Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12

• Genome Announcements
• February 2014

Draft Genome Sequence of Extended-Spectrum  -Lactamase-Producing Klebsiella pneumoniae ...

• Genome Announcements
• February 2014

Draft Genome Sequences of Extended-Spectrum  -Lactamase-Producing Escherichia coli Stra...

• Genome Announcements
• February 2014

PhyloSift: phylogenetic analysis of genomes and metagenomes

• PeerJ
• January 2014

Open Science and Reporting Animal Studies: Who's Accountable?

• PLoS Biology
• January 2014

The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blue...

• BMC Genomics
• January 2014

Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogen...

• Standards in Genomic Sciences
• January 2014

Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-...

• Standards in Genomic Sciences
• December 2013

Draft Genome Sequence of the Arsenate-Respiring Bacterium Chrysiogenes arsenatis Strain...

• Genome Announcements
• November 2013

MIxS-BE: a MIxS extension defining a minimum information standard for sequence data fro...

• The ISME Journal
• October 2013

Systematic Identification of Gene Families for Use as “Markers� for Phylogenetic an...

• PLoS ONE
• October 2013

Expert Failure: Re-evaluating Research Assessment

• PLoS Biology
• October 2013

The Impact of Helicobacter pylori Infection on the Gastric Microbiota of the Rhesus Mac...

• PLoS ONE
• October 2013

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovib...

• Standards in Genomic Sciences
• October 2013

Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated ...

• Standards in Genomic Sciences
• October 2013

Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment

• Nature Communications
• August 2013

Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, ...

• Standards in Genomic Sciences
• July 2013

Insights into the phylogeny and coding potential of microbial dark matter

• Nature
• July 2013

Draft Genome Sequence of Leucobacter sp. Strain UCD-THU (Phylum Actinobacteria)

• Genome Announcements
• June 2013

Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strai...

• Standards in Genomic Sciences
• May 2013

Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT...

• Standards in Genomic Sciences
• May 2013

Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (...

• Standards in Genomic Sciences
• May 2013

Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobac...

• Genome Announcements
• May 2013

Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria)

• Genome Announcements
• May 2013

Draft Genome Sequence of Dietzia sp. Strain UCD-THP (Phylum Actinobacteria)

• Genome Announcements
• May 2013

Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Super...

• PLoS ONE
• April 2013

High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella mar...

• Standards in Genomic Sciences
• April 2013

Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type str...

• Standards in Genomic Sciences
• April 2013

Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (...

• Standards in Genomic Sciences
• April 2013

Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes fin...

• Standards in Genomic Sciences
• April 2013

Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut...

• Standards in Genomic Sciences
• April 2013

Draft Genome Sequence of an Actinobacterium, Brachybacterium muris Strain UCD-AY4

• Genome Announcements
• March 2013

Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria)

• Genome Announcements
• March 2013

Insights into the evolution of Darwin’s finches from comparative analysis of the Geospi...

• BMC Genomics
• January 2013

Improving the coverage of the cyanobacterial phylum using diversity-driven genome seque...

• Proceedings of the National Academy of Sciences
• December 2012

Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (J...

• Standards in Genomic Sciences
• December 2012

Gene Conservation among Endospore-Forming Bacteria Reveals Additional Sporulation Genes...

• Journal of Bacteriology
• November 2012

Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversit...

• PLoS Computational Biology
• October 2012

Sifting through genomes with iterative-sequence clustering produces a large, phylogenet...

• BMC Bioinformatics
• October 2012

Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis ty...

• Standards in Genomic Sciences
• October 2012

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea ...

• Standards in Genomic Sciences
• October 2012

Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factoriz...

• PLoS ONE
• September 2012

An Integrated Pipeline for de Novo Assembly of Microbial Genomes

• PLoS ONE
• September 2012

Yeast Communities of Diverse Drosophila Species: Comparison of Two Symbiont Groups in t...

• Applied and Environmental Microbiology
• August 2012

Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux

• PLoS ONE
• July 2012

Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmi...

• Standards in Genomic Sciences
• July 2012

Badomics words and the power and peril of the ome-meme

• GigaScience
• July 2012

MicrobeDB: a locally maintainable database of microbial genomic sequences

• Bioinformatics
• May 2012

Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1...

• Standards in Genomic Sciences
• May 2012

Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducin...

• Standards in Genomic Sciences
• May 2012

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T)

• Standards in Genomic Sciences
• May 2012

Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodes...

• Standards in Genomic Sciences
• May 2012

Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type st...

• Standards in Genomic Sciences
• May 2012

Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda...

• Standards in Genomic Sciences
• May 2012

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU...

• Standards in Genomic Sciences
• May 2012

Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteo...

• Standards in Genomic Sciences
• April 2012

Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuric...

• Standards in Genomic Sciences
• March 2012

Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type ...

• Standards in Genomic Sciences
• March 2012

Accounting For Alignment Uncertainty in Phylogenomics

• PLoS ONE
• January 2012

Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T)

• Standards in Genomic Sciences
• December 2011

Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermoli...

• Standards in Genomic Sciences
• December 2011

Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila

• G3 Genes|Genomes|Genetics
• November 2011

Non-contiguous finished genome sequence and contextual data of the filamentous soil bac...

• Standards in Genomic Sciences
• October 2011

Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella m...

• Standards in Genomic Sciences
• September 2011

Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strai...

• Standards in Genomic Sciences
• September 2011

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type ...

• Standards in Genomic Sciences
• September 2011

Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (...

• Standards in Genomic Sciences
• September 2011

Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type ...

• Standards in Genomic Sciences
• September 2011

Bacterial Communities of Diverse Drosophila Species: Ecological Context of a Host–Micro...

• PLoS Genetics
• September 2011

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonal...

• Environmental Microbiology
• September 2011

The Phylogenetic Diversity of Metagenomes

• PLoS ONE
• August 2011

Mauve Assembly Metrics

• Bioinformatics
• August 2011

Aggregating, Tagging and Integrating Biodiversity Research

• PLoS ONE
• August 2011

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii...

• Standards in Genomic Sciences
• July 2011

Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1T)

• Standards in Genomic Sciences
• July 2011

Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)

• Standards in Genomic Sciences
• July 2011

Complete genome sequence of Tsukamurella paurometabola type strain (no. 33T)

• Standards in Genomic Sciences
• June 2011

Complete genome sequence of Treponema succinifaciens type strain (6091T)

• Standards in Genomic Sciences
• June 2011

Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain...

• Standards in Genomic Sciences
• June 2011

Complete genome sequence of the extremely halophilic Halanaerobium praevalens type stra...

• Standards in Genomic Sciences
• June 2011

Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxid...

• Standards in Genomic Sciences
• June 2011

Complete genome sequence of Mahella australiensis type strain (50-1 BONT)

• Standards in Genomic Sciences
• June 2011

Complete genome sequence of Haliscomenobacter hydrossis type strain (OT)

• Standards in Genomic Sciences
• June 2011

Towards Automated Phylogenomic Inference

• May 2011

Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden ...

• May 2011

Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139T)

• Standards in Genomic Sciences
• April 2011

Complete genome sequence of Odoribacter splanchnicus type strain (1651/6T)

• Standards in Genomic Sciences
• April 2011

Complete genome sequence of Oceanithermus profundus type strain (506T)

• Standards in Genomic Sciences
• April 2011

Complete genome sequence of Marivirga tractuosa type strain (H-43T)

• Standards in Genomic Sciences
• April 2011

Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6T)

• Standards in Genomic Sciences
• April 2011

Complete genome sequence of Desulfurococcus mucosus type strain (O7/1T)

• Standards in Genomic Sciences
• April 2011

Complete genome sequence of Cellulophaga lytica type strain (LIM-21T)

• Standards in Genomic Sciences
• April 2011

Complete genome sequence of Bacteroides salanitronis type strain (BL78T)

• Standards in Genomic Sciences
• April 2011

Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845T)

• Standards in Genomic Sciences
• April 2011

Drivers of bacterial  -diversity depend on spatial scale

• Proceedings of the National Academy of Sciences
• April 2011

Complete genome sequence of Leadbetterella byssophila type strain (4M15T)

• Standards in Genomic Sciences
• April 2011

Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpr...

• PLoS ONE
• March 2011

Complete genome sequence of Weeksella virosa type strain (9751T)

• Standards in Genomic Sciences
• February 2011

Complete genome sequence of Truepera radiovictrix type strain (RQ-24T)

• Standards in Genomic Sciences
• February 2011

Complete genome sequence of Cellulophaga algicola type strain (IC166T)

• Standards in Genomic Sciences
• February 2011

Complete genome sequence of Bacteroides helcogenes type strain (P 36-108T)

• Standards in Genomic Sciences
• February 2011

Complete genome sequence of Deinococcus maricopensis type strain (LB-34T)

• Standards in Genomic Sciences
• February 2011

Complete genome sequence of Thermomonospora curvata type strain (B9T)

• Standards in Genomic Sciences
• February 2011

Complete genome sequence of Paludibacter propionicigenes type strain (WB4T)

• Standards in Genomic Sciences
• February 2011

Complete genome sequence of Isosphaera pallida type strain (IS1BT)

• Standards in Genomic Sciences
• February 2011

Complete genome sequence of Desulfobulbus propionicus type strain (1pr3T)

• Standards in Genomic Sciences
• February 2011

Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1T)

• Standards in Genomic Sciences
• February 2011

PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resol...

• PLoS Computational Biology
• January 2011

Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T)

• Standards in Genomic Sciences
• December 2010

Complete genome sequence of Ferrimonas balearica type strain (PATT)

• Standards in Genomic Sciences
• October 2010

Complete genome sequence of Candidatus Ruthia magnifica

• Standards in Genomic Sciences
• October 2010

Complete genome sequence of ‘Thermobaculum terrenum’ type strain (YNP1T)

• Standards in Genomic Sciences
• October 2010

Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228T)

• Standards in Genomic Sciences
• October 2010

Complete genome sequence of Vulcanisaeta distributa type strain (IC-017T)

• Standards in Genomic Sciences
• September 2010

Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228PT)

• Standards in Genomic Sciences
• September 2010

Complete genome sequence of Arcanobacterium haemolyticum type strain (11018T)

• Standards in Genomic Sciences
• September 2010

Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 42...

• Standards in Genomic Sciences
• August 2010

Complete genome sequence of Olsenella uli type strain (VPI D76D-27CT)

• Standards in Genomic Sciences
• August 2010

Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1T)

• Standards in Genomic Sciences
• August 2010

Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288T)

• Standards in Genomic Sciences
• August 2010

Complete genome sequence of Planctomyces limnophilus type strain (Mü 290T)

• Standards in Genomic Sciences
• July 2010

Complete genome sequence of Meiothermus silvanus type strain (VI-R2T)

• Standards in Genomic Sciences
• July 2010

Complete genome sequence of Meiothermus ruber type strain (21T)

• Standards in Genomic Sciences
• July 2010

Complete genome sequence of Cellulomonas flavigena type strain (134T)

• Standards in Genomic Sciences
• July 2010

Complete genome sequence of Acidaminococcus fermentans type strain (VR4T)

• Standards in Genomic Sciences
• July 2010

Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)

• Standards in Genomic Sciences
• July 2010

Complete genome sequence of Thermosphaera aggregans type strain (M11TLT)

• Standards in Genomic Sciences
• June 2010

Complete genome sequence of Thermobispora bispora type strain (R51T)

• Standards in Genomic Sciences
• June 2010

Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460T)

• Standards in Genomic Sciences
• June 2010

Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24T)

• Standards in Genomic Sciences
• June 2010

Complete genome sequence of Brachyspira murdochii type strain (56-150T)

• Standards in Genomic Sciences
• June 2010

Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)

• Standards in Genomic Sciences
• June 2010

Complete genome sequence of Archaeoglobus profundus type strain (AV18T)

• Standards in Genomic Sciences
• June 2010

Complete genome sequence of Aminobacterium colombiense type strain (ALA-1T)

• Standards in Genomic Sciences
• June 2010

Metagenomic Sequencing of an In Vitro-Simulated Microbial Community

• PLoS ONE
• April 2010

BioTorrents: A File Sharing Service for Scientific Data

• PLoS ONE
• April 2010

Complete genome sequence of Thermocrinis albus type strain (HI 11/12T)

• Standards in Genomic Sciences
• March 2010

Complete genome sequence of Spirosoma linguale type strain (1T)

• Standards in Genomic Sciences
• March 2010

Complete genome sequence of Segniliparus rotundus type strain (CDC 1076T)

• Standards in Genomic Sciences
• March 2010

Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300T)

• Standards in Genomic Sciences
• March 2010

Complete genome sequence of Nakamurella multipartita type strain (Y-104T)

• Standards in Genomic Sciences
• March 2010

Complete genome sequence of Kribbella flavida type strain (IFO 14399T)

• Standards in Genomic Sciences
• March 2010

Complete genome sequence of Geodermatophilus obscurus type strain (G-20T)

• Standards in Genomic Sciences
• March 2010

Complete genome sequence of Conexibacter woesei type strain (ID131577T)

• Standards in Genomic Sciences
• March 2010

Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T)

• Standards in Genomic Sciences
• March 2010

Complete genome sequence of Sulfurospirillum deleyianum type strain (5175T)

• Standards in Genomic Sciences
• March 2010

The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon

• PLoS ONE
• March 2010

Complete genome sequence of Haloterrigena turkmenica type strain (4kT)

• Standards in Genomic Sciences
• February 2010

Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034T)

• Standards in Genomic Sciences
• February 2010

Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07T)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Veillonella parvula type strain (Te3T)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Streptosporangium roseum type strain (NI 9100T)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022T)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Haliangium ochraceum type strain (SMP-2T)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Gordonia bronchialis type strain (3410T)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Desulfohalobium retbaense type strain (HR100T)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IAT)

• Standards in Genomic Sciences
• January 2010

Introducing W.A.T.E.R.S.: a Workflow for the Alignment, Taxonomy, and Ecology of Riboso...

• BMC Bioinformatics
• January 2010

The Genome Sequence ofMethanohalophilus mahiiSLPTReveals Differences in the Energy Meta...

• Archaea
• January 2010

Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3T)

• Standards in Genomic Sciences
• January 2010

Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiom...

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Thermaerobacter marianensis type strain (7p75aT)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509T)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Methanothermus fervidus type strain (V24ST)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Intrasporangium calvum type strain (7 KIPT)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1T)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Desulfarculus baarsii type strain (2st14T)

• Standards in Genomic Sciences
• January 2010

Complete genome sequence of Streptobacillus moniliformis type strain (9901T)

• Standards in Genomic Sciences
• December 2009

Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T)

• Standards in Genomic Sciences
• December 2009

Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T)

• Standards in Genomic Sciences
• December 2009

Complete genome sequence of Rhodothermus marinus type strain (R-10T)

• Standards in Genomic Sciences
• December 2009

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

• Nature
• December 2009

Jonathan Eisen discusses GEBA project at DOE JGI

• December 2009

Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883T)

• Standards in Genomic Sciences
• November 2009

Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1T)

• Standards in Genomic Sciences
• November 2009

Complete genome sequence of Kangiella koreensis type strain (SW-125T)

• Standards in Genomic Sciences
• November 2009

Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134T)

• Standards in Genomic Sciences
• November 2009

Complete genome sequence of Halorhabdus utahensis type strain (AX-2T)

• Standards in Genomic Sciences
• November 2009

Complete genome sequence of Halomicrobium mukohataei type strain (arg-2T)

• Standards in Genomic Sciences
• November 2009

Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575T)

• Standards in Genomic Sciences
• November 2009

Genomics of Emerging Infectious Disease: A PLoS Collection

• PLoS Biology
• October 2009

Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255T)

• Standards in Genomic Sciences
• September 2009

Complete genome sequence of Sanguibacter keddieii type strain (ST-74T)

• Standards in Genomic Sciences
• September 2009

Complete genome sequence of Saccharomonospora viridis type strain (P101T)

• Standards in Genomic Sciences
• September 2009

Complete genome sequence of Leptotrichia buccalis type strain (C-1013-bT)

• Standards in Genomic Sciences
• September 2009

Complete genome sequence of Halogeometricum borinquense type strain (PR3T)

• Standards in Genomic Sciences
• September 2009

Complete genome sequence of Dyadobacter fermentans type strain (NS114T)

• Standards in Genomic Sciences
• September 2009

Complete genome sequence of Cryptobacterium curtum type strain (12-3T)

• Standards in Genomic Sciences
• September 2009

Complete genome sequence of Catenulispora acidiphila type strain (ID 139908T)

• Standards in Genomic Sciences
• September 2009

Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845T)

• Standards in Genomic Sciences
• September 2009

Complete genome sequence of Anaerococcus prevotii type strain (PC1T)

• Standards in Genomic Sciences
• September 2009

Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)

• Standards in Genomic Sciences
• September 2009

Human gut microbiome adopts an alternative state following small bowel transplantation

• Proceedings of the National Academy of Sciences
• September 2009

Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T)

• Standards in Genomic Sciences
• July 2009

Complete genome sequence of Kytococcus sedentarius type strain (541T)

• Standards in Genomic Sciences
• July 2009

Complete genome sequence of Desulfomicrobium baculatum type strain (XT)

• Standards in Genomic Sciences
• July 2009

Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10T)

• Standards in Genomic Sciences
• July 2009

Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122T)

• Standards in Genomic Sciences
• July 2009

Complete genome sequence of Actinosynnema mirum type strain (101T)

• Standards in Genomic Sciences
• July 2009

Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)

• Standards in Genomic Sciences
• July 2009

The Complete Genome of Teredinibacter turnerae T7901: An Intracellular Endosymbiont of ...

• PLoS ONE
• July 2009

Assembling the Marine Metagenome, One Cell at a Time

• PLoS ONE
• April 2009

Adaptations to Submarine Hydrothermal Environments Exemplified by the Genome of Nautili...

• PLoS Genetics
• February 2009

Complete Genome Sequence of the Aerobic CO-Oxidizing Thermophile Thermomicrobium roseum

• PLoS ONE
• January 2009

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

• BMC Genomics
• December 2008

Correction: An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignm...

• PLoS ONE
• July 2008

An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline...

• PLoS ONE
• July 2008

Evolution . By Nicholas H. Barton, Derek E. G. Briggs, Jonathan A. Eisen, David Goldst...

• The Quarterly Review of Biology
• June 2008

PLoS Biology 2.0

• PLoS Biology
• February 2008

A simple, fast, and accurate method of phylogenomic inference

• Genome Biology
• January 2008

Refined annotation and assembly of the Tetrahymena thermophila genome sequence through ...

• BMC Genomics
• January 2008

A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans

• Genome Biology
• January 2008

Sequence Characterization and Comparative Analysis of Three Plasmids Isolated from Envi...

• Applied and Environmental Microbiology
• October 2007

Detecting Natural Versus Unnatural DNA

• October 2007

On the taxonomic status of the intracellular bacterium Wolbachia pipientis: should this...

• INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
• August 2007

Identification of a fourth family of lycopene cyclases in photosynthetic bacteria

• Proceedings of the National Academy of Sciences
• July 2007

Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden ...

• PLoS Biology
• March 2007

The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tr...

• PLoS Biology
• March 2007

The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Fam...

• PLoS Biology
• March 2007

The Calyptogena magnifica Chemoautotrophic Symbiont Genome

• Science
• February 2007

Genetic and Physical Mapping of DNA Replication Origins in Haloferax volcanii

• PLoS Genetics
• January 2007

Correction for Goldman et al., Evolution of sensory complexity recorded in a myxobacter...

• Proceedings of the National Academy of Sciences
• December 2006

Evolution of sensory complexity recorded in a myxobacterial genome

• Proceedings of the National Academy of Sciences
• October 2006

Use of HAPPY mapping for the higher order assembly of the Tetrahymena genome

• Genomics
• October 2006

Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote

• PLoS Biology
• August 2006

Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters

• PLoS Biology
• June 2006

Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Informa...

• OMICS A Journal of Integrative Biology
• June 2006

Osmium-Catalyzed Olefin Dihydroxylation and Aminohydroxylation in the Second Catalytic ...

• Advanced Synthesis & Catalysis
• June 2006

Characterization of Bacterial Communities Associated with Deep-Sea Corals on Gulf of Al...

• Applied and Environmental Microbiology
• February 2006

Comparative Genomics of Emerging Human Ehrlichiosis Agents

• PLoS Genetics
• January 2006

Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents

• PLoS Genetics
• January 2006

Correction: Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydotherm...

• PLoS Genetics
• January 2006

Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the ...

• Proceedings of the National Academy of Sciences
• May 2005

Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic a...

• INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
• May 2005

Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes

• Science
• January 2005

Genetic and physical mapping of DNA replication origins in Haloferax volcanii

• PLoS Genetics
• January 2005

Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogeno...

• PLoS Genetics
• January 2005

• Genome Biology
• January 2005

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

• December 2004

Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus caps...

• PLoS Biology
• September 2004

Faculty of 1000 evaluation for Preserving genome integrity: the DdrA protein of Deinoco...

• September 2004

Faculty of 1000 evaluation for An RNA ligase from Deinococcus radiodurans.

• September 2004

Analysis of Deinococcus radiodurans's Transcriptional Response to Ionizing Radiation an...

• Genetics
• September 2004

Faculty of 1000 evaluation for Genetic manipulation of carotenoid biosynthesis in the g...

• August 2004

The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris...

• Nature Biotechnology
• April 2004

Environmental Genome Shotgun Sequencing of the Sargasso Sea

• Science
• April 2004

Comparison of the genome of the oral pathogen Treponema denticola with other spirochete...

• Proceedings of the National Academy of Sciences
• April 2004

Gene synteny and evolution of genome architecture in trypanosomatids

• Molecular and Biochemical Parasitology
• April 2004

Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Geno...

• PLoS Biology
• March 2004

Complete Genome Sequence of the Oral Pathogenic BacteriumPorphyromonas gingivalis Strai...

• Journal of Bacteriology
• January 2004

Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

• Science
• December 2003

Erratum to “Comparative studies of resistin expression and phylogenomics in human and m...

• Biochemical and Biophysical Research Communications
• December 2003

Comparative studies of resistin expression and phylogenomics in human and mouse

• Biochemical and Biophysical Research Communications
• October 2003

Complete Genome Sequence of the Oral Pathogenic Bacterium Porphyromonas gingivalis Stra...

• Journal of Bacteriology
• September 2003

Complete Genome Sequence of the Broad-Host-Range Vibriophage KVP40: Comparative Genomic...

• Journal of Bacteriology
• September 2003

Complete genome sequence and comparative analysis of the metabolically versatile Pseudo...

• Environmental Microbiology
• July 2003

Phylogenomics: Intersection of Evolution and Genomics

• Science
• June 2003

Modeling Bacterial Evolution with Comparative-Genome-Based Marker Systems: Application ...

• Journal of Bacteriology
• June 2003

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria

• Nature
• May 2003

Complete genome sequence of the Q-fever pathogen Coxiella burnetii

• Proceedings of the National Academy of Sciences
• April 2003

Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

• Science
• March 2003

• Plant Molecular Biology
• January 2003

Deep submergence synergy: Alvin and ABE explore the Galapagos Rift at 86°W

• Eos
• January 2003

The Value of Complete Microbial Genome Sequencing (You Get What You Pay For)

• Journal of Bacteriology
• December 2002

Complete genome sequence and comparative analysis of the metabolically versatile Pseudo...

• Environmental Microbiology
• December 2002

Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis

• Nature Biotechnology
• October 2002

Genome sequence of the human malaria parasite Plasmodium falciparum

• Nature
• October 2002

Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains

• Journal of Bacteriology
• October 2002

The Brucella suis genome reveals fundamental similarities between animal and plant path...

• Proceedings of the National Academy of Sciences
• September 2002

Complete genome sequence and comparative genomic analysis of an emerging human pathogen...

• Proceedings of the National Academy of Sciences
• August 2002

The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, gr...

• Proceedings of the National Academy of Sciences
• July 2002

Phylogenetic Analysis and Gene Functional Predictions: Phylogenomics in Action

• Theoretical Population Biology
• June 2002

A cut above: Discovery of an alternative excision repair pathway in bacteria

• Proceedings of the National Academy of Sciences
• March 2002

Brouhaha over the other yeast

• Nature
• February 2002

Unsuspected diversity among marine aerobic anoxygenic phototrophs

• Nature
• February 2002

Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wol...

• International Journal for Parasitology
• February 2002

The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58

• Science
• December 2001

Sequenced strains must be saved from extinction

• Nature
• November 2001

Shotgun Sequencing of Plasmids from Marine Sediment Bacteria - Genetic Exploration

• September 2001

Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae

• Science
• July 2001

Microbial Genes in the Human Genome: Lateral Transfer or Gene Loss?

• Science
• May 2001

Sequence and analysis of the Arabidopsis genome

• Current Opinion in Plant Biology
• April 2001

Complete genome sequence of Caulobacter crescentus

• Proceedings of the National Academy of Sciences
• March 2001

Gastrogenomics

• Nature
• January 2001

Genome of Thermotoga maritima MSB8

• January 2001

TIGRFAMs: a protein family resource for the functional identification of proteins

• Nucleic Acids Research
• January 2001

• Photosynthesis Research
• January 2001

Horizontal gene transfer among microbial genomes: new insights from complete genome ana...

• Current Opinion in Genetics & Development
• December 2000

A Case for Evolutionary Genomics and the Comprehensive Examination of Sequence Biodiver...

• Molecular Biology and Evolution
• December 2000

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

• Nature
• December 2000

Assessing evolutionary relationships among microbes from whole-genome analysis

• Current Opinion in Microbiology
• October 2000

Comparative Genomics and Understanding of Microbial Biology

• October 2000

• Nature
• August 2000

• Nature
• August 2000

Genome data: what do we learn?

• Current Opinion in Structural Biology
• June 2000

Cloning and Characterization of HARP/SMARCAL1: A Prokaryotic HepA-Related SNF2 Helicase...

• Genomics
• May 2000

Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39

• Nucleic Acids Research
• March 2000

Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58

• Science
• March 2000

Microbial genome sequencing 2000: new insights into physiology, evolution and expressio...

• Research in Microbiology
• March 2000

• Nature
• December 1999

A phylogenomic study of DNA repair genes, proteins, and processes

• Mutation Research/DNA Repair
• December 1999

Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1

• Science
• November 1999

Going to extremes

• Trends in Genetics
• June 1999

• Nature
• May 1999

A phylogenomic study of the MutS family of proteins

• Nucleic Acids Research
• September 1998

In silico-initiated cloning and molecular characterization of a novel human member of t...

• Human Genetics
• September 1998

A science renga

• Nature
• June 1998

The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus base...

• FEMS Microbiology Letters
• May 1998

The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based...

• FEMS Microbiology Letters
• May 1998

Phylogenomics: Improving Functional Predictions for Uncharacterized Genes by Evolutiona...

• Genome Research
• March 1998

Second gene for gonadotropin-releasing hormone in humans

• Proceedings of the National Academy of Sciences
• January 1998

Gastrogenomic delights: A movable feast

• Nature Medicine
• October 1997

The Genetic Data Environment

• January 1997

The RecA protein as a model molecule for molecular systematic studies of bacteria: Comp...

• Journal of Molecular Evolution
• December 1995

Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and funct...

• Nucleic Acids Research
• January 1995

Sequence similarity of putative transposases links the maize Mutator autonomous elemen...

• Nucleic Acids Research
• January 1994

recA mutations that reduce the constitutive coprotease activity of the RecA1202(Prtc) p...

• Journal of Bacteriology
• January 1993

Phylogenetic relationships of chemoautotrophic bacterial symbionts of Solemya velum say...

• Journal of Bacteriology
• January 1992

CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads

PhyloMETAGenomics

A genomic encyclopedia of bacteria and archaea

"A genomic encyclopedia of bacteria and archaea" talk by Jonathan Eisen

A personal perspective on open access publishing

Faculty of 1000 evaluation for Automated protein subfamily identification and classific...

Faculty of 1000 evaluation for The 1.2-megabase genome sequence of Mimivirus.

Faculty of 1000 evaluation for Mechanisms of evolution in Rickettsia conorii and R. pro...

Faculty of 1000 evaluation for A phylogenomic approach to microbial evolution.

Faculty of 1000 evaluation for Effects of size and temperature on metabolic rate.

Faculty of 1000 evaluation for Meiotic arrest and aneuploidy in MLH3-deficient mice.

Faculty of 1000 evaluation for Identification of a DNA nonhomologous end-joining comple...

Faculty of 1000 evaluation for The methionine salvage pathway in Bacillus subtilis.

Faculty of 1000 evaluation for Evolutionary origins of genomic repertoires in bacteria.

Faculty of 1000 evaluation for Microbial ecology of four coral atolls in the Northern L...

Faculty of 1000 evaluation for Metagenomic DNA fragments that affect Escherichia coli m...

Faculty of 1000 evaluation for Identification of multiple distinct Snf2 subfamilies wit...

Faculty of 1000 evaluation for Microbial diversity in the deep sea and the underexplore...

Faculty of 1000 evaluation for Symbiosis insights through metagenomic analysis of a mic...

Faculty of 1000 evaluation for Biochemical and molecular characterisation of Tetrahymen...

Faculty of 1000 evaluation for The metagenomics RAST server - a public resource for the...

Faculty of 1000 evaluation for Origins and evolution of the recA/RAD51 gene family: evi...

Faculty of 1000 evaluation for Ten species in one: DNA barcoding reveals cryptic specie...

Faculty of 1000 evaluation for Population genomics: whole-genome analysis of polymorphi...

Faculty of 1000 evaluation for The bacterial catalase from filarial DNA preparations de...

Faculty of 1000 evaluation for Convergent evolution of MutS and topoisomerase II for cl...

Faculty of 1000 evaluation for A simple algorithm to infer gene duplication and speciat...

Faculty of 1000 evaluation for Trends between gene content and genome size in prokaryot...

Jonathan Eisen and the GEBA project - video linked to news release re Dec. 2009 Nature ...

Jonathan Eisen and the GEBA project - video linked to news release re Dec. 2009 Nature ...

Faculty of 1000 evaluation for UniFrac--an online tool for comparing microbial communit...

Faculty of 1000 evaluation for The Wolbachia genome of Brugia malayi: endosymbiont evol...

Faculty of 1000 evaluation for The uvrA, uvrB and uvrC genes are required for repair of...

Faculty of 1000 evaluation for The role of endosymbiotic Wolbachia bacteria in the path...

Faculty of 1000 evaluation for Textpresso: an ontology-based information retrieval and ...

Faculty of 1000 evaluation for Report of the ad hoc committee for the re-evaluation of ...

Faculty of 1000 evaluation for Nine mutants of Chlorobium tepidum each unable to synthe...

Faculty of 1000 evaluation for Prevalence and evolution of core photosystem II genes in...

Faculty of 1000 evaluation for Marine T4-type bacteriophages, a ubiquitous component of...

Faculty of 1000 evaluation for Convergent evolution of chromosomal sex-determining regi...

Faculty of 1000 evaluation for High allelic diversity in the methyltransferase gene of ...

Faculty of 1000 evaluation for Genome sequence of the endocellular obligate symbiont of...

Faculty of 1000 evaluation for Evolutionary analysis of Arabidopsis, cyanobacterial, an...

Faculty of 1000 evaluation for Evidence that plant-like genes in Chlamydia species refl...

Faculty of 1000 evaluation for Enhanced repair of cyclobutane pyrimidine dimers and imp...

Faculty of 1000 evaluation for Distribution, expression, and motif variability of ankyr...

Faculty of 1000 evaluation for Discovery-based science education: functional genomic di...

Faculty of 1000 evaluation for A Sanger/pyrosequencing hybrid approach for the generati...

"Genomic Encyclopedia of Bacteria and Archaea (GEBA)"- Jonathan Eisen @ '09 DOE JGI Use...