Prof. Jonathan A. Eisen
University of California Davis
Professor, Life Sciences
United States
My co-authors include
Dr Arkhat Abzhanov
Dr Christina Boisseau
Cameron R Currie
My Publications
Correction for Dietz et al., “2019 Novel Coronavirus (COVID-19) Pandemic: Built Environ...
mSystems
May 2020
Environmental control on the distribution of metabolic strategies of benthic microbial ...
PLoS ONE
April 2020
2019 Novel Coronavirus (COVID-19) Pandemic: Built Environment Considerations To Reduce ...
mSystems
April 2020
All small things considered: the diversity of fungi, bacteria and oomycota isolated fro...
March 2020
Author Correction: Metagenome-assembled genomes provide new insight into the microbial ...
Scientific Reports
February 2020
Teredinibacter waterburyi sp. nov., a marine, cellulolytic endosymbiotic bacterium isol...
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
February 2020
Whole genome sequence analysis reveals the broad distribution of the RtxA type 1 secret...
PLoS ONE
January 2020
Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac sec...
PLoS ONE
September 2019
Whole genome sequence analysis reveals broad distribution of the RtxA type 1 secretion ...
September 2019
Characterization of the mycobiome of the seagrass, Zostera marina, reveals putative ass...
August 2019
Bacteria isolated from bengal cat (Felis catus × Prionailurus bengalensis) anal sac sec...
May 2019
Metagenome-assembled genomes provide new insight into the microbial diversity of two th...
Scientific Reports
February 2019
Bacterial communities associated with cell phones and shoes
February 2019
Bacterial communities associated with cell phones and shoes
February 2019
Network analysis to evaluate the impact of research funding on research community conso...
January 2019
Marine probiotics: increasing coral resistance to bleaching through microbiome manipula...
The ISME Journal
December 2018
The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Viru...
mSphere
October 2018
There and back again: metagenome-assembled genomes provide new insights into two therma...
August 2018
Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotro...
PLoS Biology
August 2018
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metageno...
Nature Biotechnology
July 2018
Insights into the evolution of oxygenic photosynthesis from a phylogenetically novel, l...
June 2018
Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota
PeerJ
May 2018
American Gut: an Open Platform for Citizen Science Microbiome Research
mSystems
May 2018
Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota
May 2018
Effects of preservation method on canine (Canis lupus familiaris) fecal microbiota
May 2018
Characterization of shifts of koala (Phascolarctos cinereus) intestinal microbial commu...
PeerJ
March 2018
Correction: A microbial survey of the International Space Station (ISS)
PeerJ
February 2018
Corrigendum: Minimum information about a single amplified genome (MISAG) and a metageno...
Nature Biotechnology
February 2018
A microbial survey of the International Space Station (ISS)
PeerJ
December 2017
Rokubacteria: Genomic Giants among the Uncultured Bacterial Phyla
Frontiers in Microbiology
November 2017
The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates o...
Frontiers in Microbiology
September 2017
Microbiome succession during ammonification in eelgrass bed sediments
PeerJ
August 2017
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled ...
Nature Biotechnology
August 2017
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree ...
Nature Biotechnology
June 2017
Complete Genome Sequence of Dolosigranulum pigrum ...
Genome Announcements
May 2017
Microbiome succession during ammonification in eelgrass bed sediments
April 2017
Microbiome succession during ammonification in eelgrass bed sediments
April 2017
Gut Check: The evolution of an educational board game
PLoS Biology
April 2017
Complete Genome Sequence of a Paenalcaligenes hominis ...
Genome Announcements
April 2017
Microbial communities in sediment from Zostera marina patches, but not the Z. marina le...
PeerJ
April 2017
Global-Scale Structure of the Eelgrass Microbiome
Applied and Environmental Microbiology
April 2017
Draft Genome Sequences of Pseudomonas moraviensis ...
Genome Announcements
March 2017
Research priorities for harnessing plant microbiomes in sustainable agriculture
PLoS Biology
March 2017
Draft Genome Sequence of Propionibacterium avidum ...
Genome Announcements
March 2017
Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated...
Future Microbiology
March 2017
Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infect...
mSystems
February 2017
Draft Genome Sequences of Dermacoccus nishinomiyaensis ...
Genome Announcements
February 2017
Draft Genome Sequence of Arthrobacter sp. Strai...
Genome Announcements
February 2017
Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type...
Standards in Genomic Sciences
February 2017
Draft genome sequences of eight bacteria isolated from the indoor environment: Staphylo...
Standards in Genomic Sciences
January 2017
Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations ofShig...
mSphere
December 2016
Draft Genome Sequence of Enterococcus faecalis ...
Genome Announcements
December 2016
Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections
PLoS ONE
December 2016
Global-scale structure of the eelgrass microbiome
November 2016
Ten questions concerning the microbiomes of buildings
Building and Environment
November 2016
Draft Genome Sequence of Tenacibaculum soleae U...
Genome Announcements
October 2016
Draft Genome Sequence of Gordonia sp. Strain UC...
Genome Announcements
October 2016
Draft Genome Sequence of Curtobacterium sp. Str...
Genome Announcements
October 2016
Genes Required for the Anti-fungal Activity of a Bacterial Endophyte Isolated from a Co...
Frontiers in Microbiology
October 2016
Seagrass Microbiome Sample Collection and Preservation v1 (protocols.io.fxzbpp6)
September 2016
Root-hair endophyte stacking in finger millet creates a physicochemical barrier to trap...
Nature Microbiology
September 2016
Root hair-endophyte stacking (RHESt) in an ancient Afro-Indian crop creates an unusual ...
August 2016
Genome Sequence of a Multidrug-Resistant Strain of Bacillus pumilus...
Genome Announcements
August 2016
Recent Outbreaks of Shigellosis in California Caused by Two Distinct Populations ofShig...
July 2016
The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International...
Microbiome
June 2016
Draft Genome Sequence ofKlebsiella pneumoniaeUCD-JA29 Isolated from a Patient with Sepsis
Genome Announcements
May 2016
Growth of 48 built environment bacterial isolates on board the International Space Stat...
PeerJ
March 2016
Draft Genome Sequences of Two Pseudoalteromonas porphyrae ...
Genome Announcements
March 2016
Draft Genome Sequence of Cobetia sp. UCD-24C, I...
Genome Announcements
March 2016
Draft Genome Sequences of Two Pseudoalteromonas ...
Genome Announcements
February 2016
Draft Genome Sequences of Two Vibrio splendidus ...
Genome Announcements
February 2016
Draft Genome Sequences of Acinetobacter baumannii ...
Genome Announcements
January 2016
Draft Genome Sequence of Klebsiella pneumoniae ...
Genome Announcements
January 2016
Additional Draft Genome Sequences of Escherichia coli ...
Genome Announcements
January 2016
Growth of 48 built environment bacterial isolates on board the International Space Stat...
January 2016
Growth of 48 built environment bacterial isolates on board the International Space Stat...
January 2016
PHYLOGENETIC DIVERSITY OF THE MICROBIAL MATS IN LAKE FRYXELL, ANTARCTICA
January 2016
Transcriptomes of post-mitotic neurons identify the usage of alternative pathways durin...
BMC Genomics
December 2015
Draft Genome Sequence of Porphyrobacter mercurialis ...
Genome Announcements
November 2015
Draft Genome Sequence of Bacillus safensis JPL-...
Genome Announcements
November 2015
Draft Genome Sequence of Bacillus vietnamensis ...
Genome Announcements
November 2015
Microbial Mat Communities along an Oxygen Gradient in a Perennially Ice-Covered Antarct...
Applied and Environmental Microbiology
November 2015
Comparative Genomics of the Genus Porphyromonas Identifies Adaptations for Heme Synthe...
Genome Biology and Evolution
November 2015
Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes
PLoS Computational Biology
November 2015
Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended descript...
PeerJ
November 2015
Draft Genome Sequence of Pseudoalteromonas tetraodonis ...
Genome Announcements
November 2015
Draft Genome Sequence of Planomicrobium glaciei ...
Genome Announcements
October 2015
Automated and accurate estimation of gene family abundance from shotgun metagenomes
July 2015
The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Rese...
Applied and Environmental Microbiology
June 2015
Prediction of remission in obsessive compulsive disorder using a novel machine learning...
International Journal of Methods in Psychiatric Research
May 2015
Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of ...
Standards in Genomic Sciences
May 2015
Swabs to genomes: a comprehensive workflow
PeerJ
May 2015
Forensic analysis of the microbiome of phones and shoes
Microbiome
May 2015
Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species
Proceedings of the National Academy of Sciences
May 2015
ThinkLab as a vetting system for traditional grants
April 2015
Draft Genome Sequences of 26 Porphyromonas Stra...
Genome Announcements
April 2015
Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoni...
Frontiers in Cellular and Infection Microbiology
April 2015
Genome Sequence of the Sulfate-Reducing Thermophilic Bacterium Thermodesulfovibrio yell...
Genome Announcements
January 2015
Genome Sequence of a Sulfate-Reducing Thermophilic Bacterium, Thermodesulfobacterium co...
Genome Announcements
January 2015
Swabs to genomes: a comprehensive workflow
January 2015
Swabs to genomes: a comprehensive workflow
January 2015
Draft Genome Sequence of Enterobacter sp. Strain UCD-UG_FMILLET (Phylum ...
Genome Announcements
January 2015
Draft Genome Sequence of Burkholderia gladioli Strain UCD-UG_CHAPALOTE (Phylum ...
Genome Announcements
January 2015
Structure, variation, and assembly of the root-associated microbiomes of rice
Proceedings of the National Academy of Sciences
January 2015
11+ things everyone needs to know about microbes
The Winnower
January 2015
Methylisothiazolinone in household items - a growing (or well, killing) problem #germop...
The Winnower
January 2015
What does the term microbiome mean? And where did it come from? A bit of a surprise ..
The Winnower
January 2015
Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients
Genome Announcements
December 2014
The microbes we eat: abundance and taxonomy of microbes consumed in a day’s worth of me...
PeerJ
December 2014
Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies f...
PLoS Genetics
November 2014
Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1
Genome Announcements
August 2014
Swabs to Genomes: A Comprehensive Workflow
August 2014
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
PLoS Biology
August 2014
Draft Genome Sequence of the Endosymbiont "Candidatus Ruthia magnifica" UCD-CM (Phylum ...
Genome Announcements
July 2014
microBEnet: Lessons Learned from Building an Interdisciplinary Scientific Community in ...
PLoS Biology
June 2014
Play up your lab’s leadership in open science!
June 2014
Microbial resistance to disinfectants in animal shelters
June 2014
Microbial resistance to disinfectants in animal shelters
June 2014
Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximi...
PeerJ
May 2014
Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Ski...
Genome Announcements
May 2014
Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265
Genome Announcements
May 2014
Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfatar...
Standards in Genomic Sciences
May 2014
Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Iso...
Genome Announcements
April 2014
Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 22...
Standards in Genomic Sciences
March 2014
Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximi...
February 2014
Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximi...
February 2014
Microscale sulfur cycling in the phototrophic pink berry consortia of the Sippewissett ...
Environmental Microbiology
February 2014
Complete Genome Sequence of the Extreme Thermophile Dictyoglomus thermophilum H-6-12
Genome Announcements
February 2014
Draft Genome Sequence of Extended-Spectrum -Lactamase-Producing Klebsiella pneumoniae ...
Genome Announcements
February 2014
Draft Genome Sequences of Extended-Spectrum -Lactamase-Producing Escherichia coli Stra...
Genome Announcements
February 2014
PhyloSift: phylogenetic analysis of genomes and metagenomes
PeerJ
January 2014
Open Science and Reporting Animal Studies: Who's Accountable?
PLoS Biology
January 2014
The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blue...
BMC Genomics
January 2014
Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogen...
Standards in Genomic Sciences
January 2014
Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-...
Standards in Genomic Sciences
December 2013
Draft Genome Sequence of the Arsenate-Respiring Bacterium Chrysiogenes arsenatis Strain...
Genome Announcements
November 2013
MIxS-BE: a MIxS extension defining a minimum information standard for sequence data fro...
The ISME Journal
October 2013
Systematic Identification of Gene Families for Use as “Markers� for Phylogenetic an...
PLoS ONE
October 2013
Expert Failure: Re-evaluating Research Assessment
PLoS Biology
October 2013
The Impact of Helicobacter pylori Infection on the Gastric Microbiota of the Rhesus Mac...
PLoS ONE
October 2013
Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovib...
Standards in Genomic Sciences
October 2013
Genome sequence of Frateuria aurantia type strain (Kondô 67T), a xanthomonade isolated ...
Standards in Genomic Sciences
October 2013
Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment
Nature Communications
August 2013
Prokaryotic Super Program Advisory Committee DOE Joint Genome Institute, Walnut Creek, ...
Standards in Genomic Sciences
July 2013
Insights into the phylogeny and coding potential of microbial dark matter
Nature
July 2013
Draft Genome Sequence of Leucobacter sp. Strain UCD-THU (Phylum Actinobacteria)
Genome Announcements
June 2013
Genome sequence of the phylogenetically isolated spirochete Leptonema illini type strai...
Standards in Genomic Sciences
May 2013
Genome sequence of the free-living aerobic spirochete Turneriella parva type strain (HT...
Standards in Genomic Sciences
May 2013
Complete genome sequence of the halophilic bacterium Spirochaeta africana type strain (...
Standards in Genomic Sciences
May 2013
Draft Genome Sequence of Curtobacterium flaccumfaciens Strain UCD-AKU (Phylum Actinobac...
Genome Announcements
May 2013
Draft Genome Sequence of Kocuria sp. Strain UCD-OTCP (Phylum Actinobacteria)
Genome Announcements
May 2013
Draft Genome Sequence of Dietzia sp. Strain UCD-THP (Phylum Actinobacteria)
Genome Announcements
May 2013
Phylogeny of Bacterial and Archaeal Genomes Using Conserved Genes: Supertrees and Super...
PLoS ONE
April 2013
High-quality-draft genome sequence of the yellow-pigmented flavobacterium Joostella mar...
Standards in Genomic Sciences
April 2013
Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type str...
Standards in Genomic Sciences
April 2013
Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (...
Standards in Genomic Sciences
April 2013
Complete genome sequence of the bile-resistant pigment-producing anaerobe Alistipes fin...
Standards in Genomic Sciences
April 2013
Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut...
Standards in Genomic Sciences
April 2013
Draft Genome Sequence of an Actinobacterium, Brachybacterium muris Strain UCD-AY4
Genome Announcements
March 2013
Draft Genome Sequence of Microbacterium sp. Strain UCD-TDU (Phylum Actinobacteria)
Genome Announcements
March 2013
Insights into the evolution of Darwin’s finches from comparative analysis of the Geospi...
BMC Genomics
January 2013
Improving the coverage of the cyanobacterial phylum using diversity-driven genome seque...
Proceedings of the National Academy of Sciences
December 2012
Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (J...
Standards in Genomic Sciences
December 2012
Gene Conservation among Endospore-Forming Bacteria Reveals Additional Sporulation Genes...
Journal of Bacteriology
November 2012
Incorporating 16S Gene Copy Number Information Improves Estimates of Microbial Diversit...
PLoS Computational Biology
October 2012
Sifting through genomes with iterative-sequence clustering produces a large, phylogenet...
BMC Bioinformatics
October 2012
Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis ty...
Standards in Genomic Sciences
October 2012
Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea ...
Standards in Genomic Sciences
October 2012
Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factoriz...
PLoS ONE
September 2012
An Integrated Pipeline for de Novo Assembly of Microbial Genomes
PLoS ONE
September 2012
Yeast Communities of Diverse Drosophila Species: Comparison of Two Symbiont Groups in t...
Applied and Environmental Microbiology
August 2012
Sequencing of Seven Haloarchaeal Genomes Reveals Patterns of Genomic Flux
PLoS ONE
July 2012
Complete genome sequence of the moderately thermophilic mineral-sulfide-oxidizing firmi...
Standards in Genomic Sciences
July 2012
Badomics words and the power and peril of the ome-meme
GigaScience
July 2012
MicrobeDB: a locally maintainable database of microbial genomic sequences
Bioinformatics
May 2012
Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1...
Standards in Genomic Sciences
May 2012
Genome sequence of the moderately thermophilic, amino-acid-degrading and sulfur-reducin...
Standards in Genomic Sciences
May 2012
Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T)
Standards in Genomic Sciences
May 2012
Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodes...
Standards in Genomic Sciences
May 2012
Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type st...
Standards in Genomic Sciences
May 2012
Complete genome sequence of the facultatively anaerobic, appendaged bacterium Muricauda...
Standards in Genomic Sciences
May 2012
Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU...
Standards in Genomic Sciences
May 2012
Complete genome sequence of the orange-red pigmented, radioresistant Deinococcus proteo...
Standards in Genomic Sciences
April 2012
Complete genome sequence of the sulfur compounds oxidizing chemolithoautotroph Sulfuric...
Standards in Genomic Sciences
March 2012
Complete genome sequence of the aerobic, heterotroph Marinithermus hydrothermalis type ...
Standards in Genomic Sciences
March 2012
Accounting For Alignment Uncertainty in Phylogenomics
PLoS ONE
January 2012
Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2T)
Standards in Genomic Sciences
December 2011
Complete genome sequence of the thermophilic sulfur-reducer Desulfurobacterium thermoli...
Standards in Genomic Sciences
December 2011
Genome-Scale Analysis of Programmed DNA Elimination Sites in Tetrahymena thermophila
G3 Genes|Genome|Genetics
November 2011
Non-contiguous finished genome sequence and contextual data of the filamentous soil bac...
Standards in Genomic Sciences
October 2011
Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella m...
Standards in Genomic Sciences
September 2011
Genome sequence of the moderately thermophilic halophile Flexistipes sinusarabici strai...
Standards in Genomic Sciences
September 2011
Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type ...
Standards in Genomic Sciences
September 2011
Complete genome sequence of the gliding, heparinolytic Pedobacter saltans type strain (...
Standards in Genomic Sciences
September 2011
Complete genome sequence of the gliding freshwater bacterium Fluviicola taffensis type ...
Standards in Genomic Sciences
September 2011
Bacterial Communities of Diverse Drosophila Species: Ecological Context of a Host–Micro...
PLoS Genetics
September 2011
Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonal...
Environmental Microbiology
September 2011
The Phylogenetic Diversity of Metagenomes
PLoS ONE
August 2011
Mauve Assembly Metrics
Bioinformatics
August 2011
Aggregating, Tagging and Integrating Biodiversity Research
PLoS ONE
August 2011
Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii...
Standards in Genomic Sciences
July 2011
Complete genome sequence of Nitratifractor salsuginis type strain (E9I37-1T)
Standards in Genomic Sciences
July 2011
Complete genome sequence of Syntrophobotulus glycolicus type strain (FlGlyRT)
Standards in Genomic Sciences
July 2011
Complete genome sequence of Tsukamurella paurometabola type strain (no. 33T)
Standards in Genomic Sciences
June 2011
Complete genome sequence of Treponema succinifaciens type strain (6091T)
Standards in Genomic Sciences
June 2011
Complete genome sequence of the thermophilic sulfur-reducer Hippea maritima type strain...
Standards in Genomic Sciences
June 2011
Complete genome sequence of the extremely halophilic Halanaerobium praevalens type stra...
Standards in Genomic Sciences
June 2011
Complete genome sequence of the acetate-degrading sulfate reducer Desulfobacca acetoxid...
Standards in Genomic Sciences
June 2011
Complete genome sequence of Mahella australiensis type strain (50-1 BONT)
Standards in Genomic Sciences
June 2011
Complete genome sequence of Haliscomenobacter hydrossis type strain (OT)
Standards in Genomic Sciences
June 2011
Towards Automated Phylogenomic Inference
May 2011
Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden ...
May 2011
Non-contiguous finished genome sequence of Bacteroides coprosuis type strain (PC139T)
Standards in Genomic Sciences
April 2011
Complete genome sequence of Odoribacter splanchnicus type strain (1651/6T)
Standards in Genomic Sciences
April 2011
Complete genome sequence of Oceanithermus profundus type strain (506T)
Standards in Genomic Sciences
April 2011
Complete genome sequence of Marivirga tractuosa type strain (H-43T)
Standards in Genomic Sciences
April 2011
Complete genome sequence of Hydrogenobacter thermophilus type strain (TK-6T)
Standards in Genomic Sciences
April 2011
Complete genome sequence of Desulfurococcus mucosus type strain (O7/1T)
Standards in Genomic Sciences
April 2011
Complete genome sequence of Cellulophaga lytica type strain (LIM-21T)
Standards in Genomic Sciences
April 2011
Complete genome sequence of Bacteroides salanitronis type strain (BL78T)
Standards in Genomic Sciences
April 2011
Complete genome sequence of Riemerella anatipestifer type strain (ATCC 11845T)
Standards in Genomic Sciences
April 2011
Drivers of bacterial -diversity depend on spatial scale
Proceedings of the National Academy of Sciences
April 2011
Complete genome sequence of Leadbetterella byssophila type strain (4M15T)
Standards in Genomic Sciences
April 2011
Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpr...
PLoS ONE
March 2011
Complete genome sequence of Weeksella virosa type strain (9751T)
Standards in Genomic Sciences
February 2011
Complete genome sequence of Truepera radiovictrix type strain (RQ-24T)
Standards in Genomic Sciences
February 2011
Complete genome sequence of Cellulophaga algicola type strain (IC166T)
Standards in Genomic Sciences
February 2011
Complete genome sequence of Bacteroides helcogenes type strain (P 36-108T)
Standards in Genomic Sciences
February 2011
Complete genome sequence of Deinococcus maricopensis type strain (LB-34T)
Standards in Genomic Sciences
February 2011
Complete genome sequence of Thermomonospora curvata type strain (B9T)
Standards in Genomic Sciences
February 2011
Complete genome sequence of Paludibacter propionicigenes type strain (WB4T)
Standards in Genomic Sciences
February 2011
Complete genome sequence of Isosphaera pallida type strain (IS1BT)
Standards in Genomic Sciences
February 2011
Complete genome sequence of Desulfobulbus propionicus type strain (1pr3T)
Standards in Genomic Sciences
February 2011
Complete genome sequence of Calditerrivibrio nitroreducens type strain (Yu37-1T)
Standards in Genomic Sciences
February 2011
PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resol...
PLoS Computational Biology
January 2011
Complete genome sequence of Syntrophothermus lipocalidus type strain (TGB-C1T)
Standards in Genomic Sciences
December 2010
Complete genome sequence of Ferrimonas balearica type strain (PATT)
Standards in Genomic Sciences
October 2010
Complete genome sequence of Candidatus Ruthia magnifica
Standards in Genomic Sciences
October 2010
Complete genome sequence of ‘Thermobaculum terrenum’ type strain (YNP1T)
Standards in Genomic Sciences
October 2010
Complete genome sequence of Spirochaeta smaragdinae type strain (SEBR 4228T)
Standards in Genomic Sciences
October 2010
Complete genome sequence of Vulcanisaeta distributa type strain (IC-017T)
Standards in Genomic Sciences
September 2010
Complete genome sequence of Thermosediminibacter oceani type strain (JW/IW-1228PT)
Standards in Genomic Sciences
September 2010
Complete genome sequence of Arcanobacterium haemolyticum type strain (11018T)
Standards in Genomic Sciences
September 2010
Permanent draft genome sequence of Dethiosulfovibrio peptidovorans type strain (SEBR 42...
Standards in Genomic Sciences
August 2010
Complete genome sequence of Olsenella uli type strain (VPI D76D-27CT)
Standards in Genomic Sciences
August 2010
Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1T)
Standards in Genomic Sciences
August 2010
Complete genome sequence of Acetohalobium arabaticum type strain (Z-7288T)
Standards in Genomic Sciences
August 2010
Complete genome sequence of Planctomyces limnophilus type strain (Mü 290T)
Standards in Genomic Sciences
July 2010
Complete genome sequence of Meiothermus silvanus type strain (VI-R2T)
Standards in Genomic Sciences
July 2010
Complete genome sequence of Meiothermus ruber type strain (21T)
Standards in Genomic Sciences
July 2010
Complete genome sequence of Cellulomonas flavigena type strain (134T)
Standards in Genomic Sciences
July 2010
Complete genome sequence of Acidaminococcus fermentans type strain (VR4T)
Standards in Genomic Sciences
July 2010
Erratum to: Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)
Standards in Genomic Sciences
July 2010
Complete genome sequence of Thermosphaera aggregans type strain (M11TLT)
Standards in Genomic Sciences
June 2010
Complete genome sequence of Thermobispora bispora type strain (R51T)
Standards in Genomic Sciences
June 2010
Complete genome sequence of Denitrovibrio acetiphilus type strain (N2460T)
Standards in Genomic Sciences
June 2010
Complete genome sequence of Coraliomargarita akajimensis type strain (04OKA010-24T)
Standards in Genomic Sciences
June 2010
Complete genome sequence of Brachyspira murdochii type strain (56-150T)
Standards in Genomic Sciences
June 2010
Complete genome sequence of Arcobacter nitrofigilis type strain (CIT)
Standards in Genomic Sciences
June 2010
Complete genome sequence of Archaeoglobus profundus type strain (AV18T)
Standards in Genomic Sciences
June 2010
Complete genome sequence of Aminobacterium colombiense type strain (ALA-1T)
Standards in Genomic Sciences
June 2010
Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
PLoS ONE
April 2010
BioTorrents: A File Sharing Service for Scientific Data
PLoS ONE
April 2010
Complete genome sequence of Thermocrinis albus type strain (HI 11/12T)
Standards in Genomic Sciences
March 2010
Complete genome sequence of Spirosoma linguale type strain (1T)
Standards in Genomic Sciences
March 2010
Complete genome sequence of Segniliparus rotundus type strain (CDC 1076T)
Standards in Genomic Sciences
March 2010
Complete genome sequence of Sebaldella termitidis type strain (NCTC 11300T)
Standards in Genomic Sciences
March 2010
Complete genome sequence of Nakamurella multipartita type strain (Y-104T)
Standards in Genomic Sciences
March 2010
Complete genome sequence of Kribbella flavida type strain (IFO 14399T)
Standards in Genomic Sciences
March 2010
Complete genome sequence of Geodermatophilus obscurus type strain (G-20T)
Standards in Genomic Sciences
March 2010
Complete genome sequence of Conexibacter woesei type strain (ID131577T)
Standards in Genomic Sciences
March 2010
Erratum to: Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T)
Standards in Genomic Sciences
March 2010
Complete genome sequence of Sulfurospirillum deleyianum type strain (5175T)
Standards in Genomic Sciences
March 2010
The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon
PLoS ONE
March 2010
Complete genome sequence of Haloterrigena turkmenica type strain (4kT)
Standards in Genomic Sciences
February 2010
Complete genome sequence of Chitinophaga pinensis type strain (UQM 2034T)
Standards in Genomic Sciences
February 2010
Complete genome sequence of Xylanimonas cellulosilytica type strain (XIL07T)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Veillonella parvula type strain (Te3T)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Streptosporangium roseum type strain (NI 9100T)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Sphaerobacter thermophilus type strain (S 6022T)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Haliangium ochraceum type strain (SMP-2T)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Gordonia bronchialis type strain (3410T)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Desulfohalobium retbaense type strain (HR100T)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Alicyclobacillus acidocaldarius type strain (104-IAT)
Standards in Genomic Sciences
January 2010
Introducing W.A.T.E.R.S.: a Workflow for the Alignment, Taxonomy, and Ecology of Riboso...
BMC Bioinformatics
January 2010
The Genome Sequence ofMethanohalophilus mahiiSLPTReveals Differences in the Energy Meta...
Archaea
January 2010
Non-contiguous finished genome sequence of Aminomonas paucivorans type strain (GLU-3T)
Standards in Genomic Sciences
January 2010
Meeting Report: The Terabase Metagenomics Workshop and the Vision of an Earth Microbiom...
Standards in Genomic Sciences
January 2010
Complete genome sequence of Thermaerobacter marianensis type strain (7p75aT)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509T)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Methanothermus fervidus type strain (V24ST)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Intrasporangium calvum type strain (7 KIPT)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Ilyobacter polytropus type strain (CuHbu1T)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Desulfarculus baarsii type strain (2st14T)
Standards in Genomic Sciences
January 2010
Complete genome sequence of Streptobacillus moniliformis type strain (9901T)
Standards in Genomic Sciences
December 2009
Complete genome sequence of Stackebrandtia nassauensis type strain (LLR-40K-21T)
Standards in Genomic Sciences
December 2009
Complete genome sequence of Pirellula staleyi type strain (ATCC 27377T)
Standards in Genomic Sciences
December 2009
Complete genome sequence of Rhodothermus marinus type strain (R-10T)
Standards in Genomic Sciences
December 2009
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
Nature
December 2009
Jonathan Eisen discusses GEBA project at DOE JGI
December 2009
Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883T)
Standards in Genomic Sciences
November 2009
Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1T)
Standards in Genomic Sciences
November 2009
Complete genome sequence of Kangiella koreensis type strain (SW-125T)
Standards in Genomic Sciences
November 2009
Complete genome sequence of Jonesia denitrificans type strain (Prevot 55134T)
Standards in Genomic Sciences
November 2009
Complete genome sequence of Halorhabdus utahensis type strain (AX-2T)
Standards in Genomic Sciences
November 2009
Complete genome sequence of Halomicrobium mukohataei type strain (arg-2T)
Standards in Genomic Sciences
November 2009
Complete genome sequence of Desulfotomaculum acetoxidans type strain (5575T)
Standards in Genomic Sciences
November 2009
Genomics of Emerging Infectious Disease: A PLoS Collection
PLoS Biology
October 2009
Complete genome sequence of Eggerthella lenta type strain (IPP VPI 0255T)
Standards in Genomic Sciences
September 2009
Complete genome sequence of Sanguibacter keddieii type strain (ST-74T)
Standards in Genomic Sciences
September 2009
Complete genome sequence of Saccharomonospora viridis type strain (P101T)
Standards in Genomic Sciences
September 2009
Complete genome sequence of Leptotrichia buccalis type strain (C-1013-bT)
Standards in Genomic Sciences
September 2009
Complete genome sequence of Halogeometricum borinquense type strain (PR3T)
Standards in Genomic Sciences
September 2009
Complete genome sequence of Dyadobacter fermentans type strain (NS114T)
Standards in Genomic Sciences
September 2009
Complete genome sequence of Cryptobacterium curtum type strain (12-3T)
Standards in Genomic Sciences
September 2009
Complete genome sequence of Catenulispora acidiphila type strain (ID 139908T)
Standards in Genomic Sciences
September 2009
Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845T)
Standards in Genomic Sciences
September 2009
Complete genome sequence of Anaerococcus prevotii type strain (PC1T)
Standards in Genomic Sciences
September 2009
Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)
Standards in Genomic Sciences
September 2009
Human gut microbiome adopts an alternative state following small bowel transplantation
Proceedings of the National Academy of Sciences
September 2009
Complete genome sequence of Pedobacter heparinus type strain (HIM 762-3T)
Standards in Genomic Sciences
July 2009
Complete genome sequence of Kytococcus sedentarius type strain (541T)
Standards in Genomic Sciences
July 2009
Complete genome sequence of Desulfomicrobium baculatum type strain (XT)
Standards in Genomic Sciences
July 2009
Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10T)
Standards in Genomic Sciences
July 2009
Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122T)
Standards in Genomic Sciences
July 2009
Complete genome sequence of Actinosynnema mirum type strain (101T)
Standards in Genomic Sciences
July 2009
Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT)
Standards in Genomic Sciences
July 2009
The Complete Genome of Teredinibacter turnerae T7901: An Intracellular Endosymbiont of ...
PLoS ONE
July 2009
Assembling the Marine Metagenome, One Cell at a Time
PLoS ONE
April 2009
Adaptations to Submarine Hydrothermal Environments Exemplified by the Genome of Nautili...
PLoS Genetics
February 2009
Complete Genome Sequence of the Aerobic CO-Oxidizing Thermophile Thermomicrobium roseum
PLoS ONE
January 2009
Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications
BMC Genomics
December 2008
Correction: An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignm...
PLoS ONE
July 2008
An Automated Phylogenetic Tree-Based Small Subunit rRNA Taxonomy and Alignment Pipeline...
PLoS ONE
July 2008
Evolution . By Nicholas H. Barton, Derek E. G. Briggs, Jonathan A. Eisen, David Goldst...
The Quarterly Review of Biology
June 2008
PLoS Biology 2.0
PLoS Biology
February 2008
A simple, fast, and accurate method of phylogenomic inference
Genome Biology
January 2008
Refined annotation and assembly of the Tetrahymena thermophila genome sequence through ...
BMC Genomics
January 2008
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
Genome Biology
January 2008
Sequence Characterization and Comparative Analysis of Three Plasmids Isolated from Envi...
Applied and Environmental Microbiology
October 2007
Detecting Natural Versus Unnatural DNA
October 2007
On the taxonomic status of the intracellular bacterium Wolbachia pipientis: should this...
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
August 2007
Identification of a fourth family of lycopene cyclases in photosynthetic bacteria
Proceedings of the National Academy of Sciences
July 2007
Environmental Shotgun Sequencing: Its Potential and Challenges for Studying the Hidden ...
PLoS Biology
March 2007
The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tr...
PLoS Biology
March 2007
The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Fam...
PLoS Biology
March 2007
The Calyptogena magnifica Chemoautotrophic Symbiont Genome
Science
February 2007
Genetic and Physical Mapping of DNA Replication Origins in Haloferax volcanii
PLoS Genetics
January 2007
Correction for Goldman et al., Evolution of sensory complexity recorded in a myxobacter...
Proceedings of the National Academy of Sciences
December 2006
Evolution of sensory complexity recorded in a myxobacterial genome
Proceedings of the National Academy of Sciences
October 2006
Use of HAPPY mapping for the higher order assembly of the Tetrahymena genome
Genomics
October 2006
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote
PLoS Biology
August 2006
Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters
PLoS Biology
June 2006
Taking the First Steps towards a Standard for Reporting on Phylogenies: Minimum Informa...
OMICS A Journal of Integrative Biology
June 2006
Osmium-Catalyzed Olefin Dihydroxylation and Aminohydroxylation in the Second Catalytic ...
Advanced Synthesis & Catalysis
June 2006
Characterization of Bacterial Communities Associated with Deep-Sea Corals on Gulf of Al...
Applied and Environmental Microbiology
February 2006
Comparative Genomics of Emerging Human Ehrlichiosis Agents
PLoS Genetics
January 2006
Correction: Comparative Genomics of Emerging Human Ehrlichiosis Agents
PLoS Genetics
January 2006
Correction: Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydotherm...
PLoS Genetics
January 2006
Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the ...
Proceedings of the National Academy of Sciences
May 2005
Genomic analysis of Hyphomonas neptunium contradicts 16S rRNA gene-based phylogenetic a...
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
May 2005
Genome Sequence of the PCE-Dechlorinating Bacterium Dehalococcoides ethenogenes
Science
January 2005
Genetic and physical mapping of DNA replication origins in Haloferax volcanii
PLoS Genetics
January 2005
Life in Hot Carbon Monoxide: The Complete Genome Sequence of Carboxydothermus hydrogeno...
PLoS Genetics
January 2005
Genome Biology
January 2005
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
December 2004
Genomic Insights into Methanotrophy: The Complete Genome Sequence of Methylococcus caps...
PLoS Biology
September 2004
Faculty of 1000 evaluation for Preserving genome integrity: the DdrA protein of Deinoco...
September 2004
Faculty of 1000 evaluation for An RNA ligase from Deinococcus radiodurans.
September 2004
Analysis of Deinococcus radiodurans's Transcriptional Response to Ionizing Radiation an...
Genetics
September 2004
Faculty of 1000 evaluation for Genetic manipulation of carotenoid biosynthesis in the g...
August 2004
The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris...
Nature Biotechnology
April 2004
Environmental Genome Shotgun Sequencing of the Sargasso Sea
Science
April 2004
Comparison of the genome of the oral pathogen Treponema denticola with other spirochete...
Proceedings of the National Academy of Sciences
April 2004
Gene synteny and evolution of genome architecture in trypanosomatids
Molecular and Biochemical Parasitology
April 2004
Phylogenomics of the Reproductive Parasite Wolbachia pipientis wMel: A Streamlined Geno...
PLoS Biology
March 2004
Complete Genome Sequence of the Oral Pathogenic BacteriumPorphyromonas gingivalis Strai...
Journal of Bacteriology
January 2004
Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments
Science
December 2003
Erratum to “Comparative studies of resistin expression and phylogenomics in human and m...
Biochemical and Biophysical Research Communications
December 2003
Comparative studies of resistin expression and phylogenomics in human and mouse
Biochemical and Biophysical Research Communications
October 2003
Complete Genome Sequence of the Oral Pathogenic Bacterium Porphyromonas gingivalis Stra...
Journal of Bacteriology
September 2003
Complete Genome Sequence of the Broad-Host-Range Vibriophage KVP40: Comparative Genomic...
Journal of Bacteriology
September 2003
Complete genome sequence and comparative analysis of the metabolically versatile Pseudo...
Environmental Microbiology
July 2003
Phylogenomics: Intersection of Evolution and Genomics
Science
June 2003
Modeling Bacterial Evolution with Comparative-Genome-Based Marker Systems: Application ...
Journal of Bacteriology
June 2003
The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria
Nature
May 2003
Complete genome sequence of the Q-fever pathogen Coxiella burnetii
Proceedings of the National Academy of Sciences
April 2003
Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis
Science
March 2003
Plant Molecular Biology
January 2003
Deep submergence synergy: Alvin and ABE explore the Galapagos Rift at 86°W
Eos
January 2003
The Value of Complete Microbial Genome Sequencing (You Get What You Pay For)
Journal of Bacteriology
December 2002
Complete genome sequence and comparative analysis of the metabolically versatile Pseudo...
Environmental Microbiology
December 2002
Genome sequence of the dissimilatory metal ion–reducing bacterium Shewanella oneidensis
Nature Biotechnology
October 2002
Genome sequence of the human malaria parasite Plasmodium falciparum
Nature
October 2002
Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains
Journal of Bacteriology
October 2002
The Brucella suis genome reveals fundamental similarities between animal and plant path...
Proceedings of the National Academy of Sciences
September 2002
Complete genome sequence and comparative genomic analysis of an emerging human pathogen...
Proceedings of the National Academy of Sciences
August 2002
The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, gr...
Proceedings of the National Academy of Sciences
July 2002
Phylogenetic Analysis and Gene Functional Predictions: Phylogenomics in Action
Theoretical Population Biology
June 2002
A cut above: Discovery of an alternative excision repair pathway in bacteria
Proceedings of the National Academy of Sciences
March 2002
Brouhaha over the other yeast
Nature
February 2002
Unsuspected diversity among marine aerobic anoxygenic phototrophs
Nature
February 2002
Sequencing and analysis of a 63 kb bacterial artificial chromosome insert from the Wol...
International Journal for Parasitology
February 2002
The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58
Science
December 2001
Sequenced strains must be saved from extinction
Nature
November 2001
Shotgun Sequencing of Plasmids from Marine Sediment Bacteria - Genetic Exploration
September 2001
Complete Genome Sequence of a Virulent Isolate of Streptococcus pneumoniae
Science
July 2001
Microbial Genes in the Human Genome: Lateral Transfer or Gene Loss?
Science
May 2001
Sequence and analysis of the Arabidopsis genome
Current Opinion in Plant Biology
April 2001
Complete genome sequence of Caulobacter crescentus
Proceedings of the National Academy of Sciences
March 2001
Gastrogenomics
Nature
January 2001
Genome of Thermotoga maritima MSB8
January 2001
TIGRFAMs: a protein family resource for the functional identification of proteins
Nucleic Acids Research
January 2001
Photosynthesis Research
January 2001
Horizontal gene transfer among microbial genomes: new insights from complete genome ana...
Current Opinion in Genetics & Development
December 2000
A Case for Evolutionary Genomics and the Comprehensive Examination of Sequence Biodiver...
Molecular Biology and Evolution
December 2000
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Nature
December 2000
Assessing evolutionary relationships among microbes from whole-genome analysis
Current Opinion in Microbiology
October 2000
Comparative Genomics and Understanding of Microbial Biology
October 2000
Nature
August 2000
Nature
August 2000
Genome data: what do we learn?
Current Opinion in Structural Biology
June 2000
Cloning and Characterization of HARP/SMARCAL1: A Prokaryotic HepA-Related SNF2 Helicase...
Genomics
May 2000
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39
Nucleic Acids Research
March 2000
Complete Genome Sequence of Neisseria meningitidis Serogroup B Strain MC58
Science
March 2000
Microbial genome sequencing 2000: new insights into physiology, evolution and expressio...
Research in Microbiology
March 2000
Nature
December 1999
A phylogenomic study of DNA repair genes, proteins, and processes
Mutation Research/DNA Repair
December 1999
Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1
Science
November 1999
Going to extremes
Trends in Genetics
June 1999
Nature
May 1999
A phylogenomic study of the MutS family of proteins
Nucleic Acids Research
September 1998
In silico-initiated cloning and molecular characterization of a novel human member of t...
Human Genetics
September 1998
A science renga
Nature
June 1998
The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus base...
FEMS Microbiology Letters
May 1998
The phylogenetic relationships of Chlorobium tepidum and Chloroflexus aurantiacus based...
FEMS Microbiology Letters
May 1998
Phylogenomics: Improving Functional Predictions for Uncharacterized Genes by Evolutiona...
Genome Research
March 1998
Second gene for gonadotropin-releasing hormone in humans
Proceedings of the National Academy of Sciences
January 1998
Gastrogenomic delights: A movable feast
news nature com
October 1997
The Genetic Data Environment
January 1997
The RecA protein as a model molecule for molecular systematic studies of bacteria: Comp...
Journal of Molecular Evolution
December 1995
Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and funct...
Nucleic Acids Research
January 1995
Sequence similarity of putative transposases links the maize Mutator autonomous elemen...
Nucleic Acids Research
January 1994
recA mutations that reduce the constitutive coprotease activity of the RecA1202(Prtc) p...
Journal of Bacteriology
January 1993
Phylogenetic relationships of chemoautotrophic bacterial symbionts of Solemya velum say...
Journal of Bacteriology
January 1992
CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads
PhyloMETAGenomics
A genomic encyclopedia of bacteria and archaea
"A genomic encyclopedia of bacteria and archaea" talk by Jonathan Eisen
A personal perspective on open access publishing
Faculty of 1000 evaluation for Automated protein subfamily identification and classific...
Faculty of 1000 evaluation for The 1.2-megabase genome sequence of Mimivirus.
Faculty of 1000 evaluation for Mechanisms of evolution in Rickettsia conorii and R. pro...
Faculty of 1000 evaluation for A phylogenomic approach to microbial evolution.
Faculty of 1000 evaluation for Effects of size and temperature on metabolic rate.
Faculty of 1000 evaluation for Meiotic arrest and aneuploidy in MLH3-deficient mice.
Faculty of 1000 evaluation for Identification of a DNA nonhomologous end-joining comple...
Faculty of 1000 evaluation for The methionine salvage pathway in Bacillus subtilis.
Faculty of 1000 evaluation for Evolutionary origins of genomic repertoires in bacteria.
Faculty of 1000 evaluation for Microbial ecology of four coral atolls in the Northern L...
Faculty of 1000 evaluation for Metagenomic DNA fragments that affect Escherichia coli m...
Faculty of 1000 evaluation for Identification of multiple distinct Snf2 subfamilies wit...
Faculty of 1000 evaluation for Microbial diversity in the deep sea and the underexplore...
Faculty of 1000 evaluation for Symbiosis insights through metagenomic analysis of a mic...
Faculty of 1000 evaluation for Biochemical and molecular characterisation of Tetrahymen...
Faculty of 1000 evaluation for The metagenomics RAST server - a public resource for the...
Faculty of 1000 evaluation for Origins and evolution of the recA/RAD51 gene family: evi...
Faculty of 1000 evaluation for Ten species in one: DNA barcoding reveals cryptic specie...
Faculty of 1000 evaluation for Population genomics: whole-genome analysis of polymorphi...
Faculty of 1000 evaluation for The bacterial catalase from filarial DNA preparations de...
Faculty of 1000 evaluation for Convergent evolution of MutS and topoisomerase II for cl...
Faculty of 1000 evaluation for A simple algorithm to infer gene duplication and speciat...
Faculty of 1000 evaluation for Trends between gene content and genome size in prokaryot...
Jonathan Eisen and the GEBA project - video linked to news release re Dec. 2009 Nature ...
Jonathan Eisen and the GEBA project - video linked to news release re Dec. 2009 Nature ...
Faculty of 1000 evaluation for UniFrac--an online tool for comparing microbial communit...
Faculty of 1000 evaluation for The Wolbachia genome of Brugia malayi: endosymbiont evol...
Faculty of 1000 evaluation for The uvrA, uvrB and uvrC genes are required for repair of...
Faculty of 1000 evaluation for The role of endosymbiotic Wolbachia bacteria in the path...
Faculty of 1000 evaluation for Textpresso: an ontology-based information retrieval and ...
Faculty of 1000 evaluation for Report of the ad hoc committee for the re-evaluation of ...
Faculty of 1000 evaluation for Nine mutants of Chlorobium tepidum each unable to synthe...
Faculty of 1000 evaluation for Prevalence and evolution of core photosystem II genes in...
Faculty of 1000 evaluation for Marine T4-type bacteriophages, a ubiquitous component of...
Faculty of 1000 evaluation for Convergent evolution of chromosomal sex-determining regi...
Faculty of 1000 evaluation for High allelic diversity in the methyltransferase gene of ...
Faculty of 1000 evaluation for Genome sequence of the endocellular obligate symbiont of...
Faculty of 1000 evaluation for Evolutionary analysis of Arabidopsis, cyanobacterial, an...
Faculty of 1000 evaluation for Evidence that plant-like genes in Chlamydia species refl...
Faculty of 1000 evaluation for Enhanced repair of cyclobutane pyrimidine dimers and imp...
Faculty of 1000 evaluation for Distribution, expression, and motif variability of ankyr...
Faculty of 1000 evaluation for Discovery-based science education: functional genomic di...
Faculty of 1000 evaluation for A Sanger/pyrosequencing hybrid approach for the generati...
"Genomic Encyclopedia of Bacteria and Archaea (GEBA)"- Jonathan Eisen @ '09 DOE JGI Use...
