All Stories

  1. The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis
  2. Correction for Beach et al., “Exploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox Microbiome”
  3. Metagenome-Assembled Genomes from a Microbiome Converting Xylose to Medium-Chain Carboxylic Acids
  4. iNovo479: Metabolic Modeling Provides a Roadmap to Optimize Bioproduct Yield from Deconstructed Lignin Aromatics by Novosphingobium aromaticivorans
  5. Aromatic Dimer Dehydrogenases from Novosphingobium aromaticivorans Reduce Monoaromatic Diketones
  6. Exploring the Meta-regulon of the CRP/FNR Family of Global Transcriptional Regulators in a Partial-Nitritation Anammox Microbiome
  7. Promoter Architecture Differences among Alphaproteobacteria and Other Bacterial Taxa
  8. Delila-PY, a Pipeline for Utilizing the Delila Suite of Software to Identify Potential DNA Binding Motifs
  9. Redundancy in Aromatic O -Demethylation and Ring-Opening Reactions in Novosphingobium aromaticivorans and Their Impact in the Metabolism of Plant-Derived Phenolics
  10. A High-Throughput Method for Identifying Novel Genes That Influence Metabolic Pathways Reveals New Iron and Heme Regulation in Pseudomonas aeruginosa
  11. Rewiring the specificity of extracytoplasmic function sigma factors
  12. Functional pathway redundancy in the metabolism of plant-derived phenolics byNovosphingobium aromaticivorans
  13. A majority of Rhodobacter sphaeroides promoters lack a crucial RNA polymerase recognition feature, enabling coordinated transcription activation
  14. Diagnosing and Predicting Mixed-Culture Fermentations with Unicellular and Guild-Based Metabolic Models
  15. Genome-Wide Identification of Transcription Start Sites in Two Alphaproteobacteria , Rhodobacter sphaeroides 2.4.1 and Novosphingobium aromaticivorans DSM 12444
  16. Rewiring the specificity of extra-cytoplasmic function sigma factors
  17. COnTORT: COmprehensive Transcriptomic ORganizational Tool for Simultaneously Retrieving and Organizing Numerous Gene Expression Data Sets from the NCBI Gene Expression Omnibus Database
  18. A bacterial biosynthetic pathway for methylated furan fatty acids
  19. The NtrYX Two-Component System Regulates the Bacterial Cell Envelope
  20. Anaerobic Degradation of Syringic Acid by an Adapted Strain of Rhodopseudomonas palustris
  21. Medium-Chain Fatty Acid Synthesis by “Candidatus Weimeria bifida” gen. nov., sp. nov., and “Candidatus Pseudoramibacter fermentans” sp. nov.
  22. Anaerobic degradation of syringic acid by an adapted strain of Rhodopseudomonas palustris
  23. Multi-omic analysis of medium-chain fatty acid synthesis by Candidatus Weimerbacter bifidus, gen. nov., sp. nov., and Candidatus Pseudoramibacter fermentans, sp. nov.
  24. Discovery of the Extracytoplasmic Function σ Factors
  25. Shedding light on a Group IV ( ECF 11) alternative σ factor
  26. Funneling aromatic products of chemically depolymerized lignin into 2-pyrone-4-6-dicarboxylic acid withNovosphingobium aromaticivorans
  27. A heterodimeric glutathione S-transferase that stereospecifically breaks lignin's β(R)-aryl ether bond reveals the diversity of bacterial β-etherases
  28. Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome
  29. Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid production
  30. Novosphingobium aromaticivoransuses a Nu-class glutathione-S-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin
  31. In VitroEnzymatic Depolymerization of Lignin with Release of Syringyl, Guaiacyl, and Tricin Units
  32. Combining Genome-Scale Experimental and Computational Methods To Identify Essential Genes in Rhodobacter sphaeroides
  33. Biochemical transformation of lignin for deriving valued commodities from lignocellulose
  34. Mutations That Alter the Bacterial Cell Envelope Increase Lipid Production
  35. Journal Impact Factors: Changing the Weather
  36. Toward a Predictive Understanding of Earth’s Microbiomes to Address 21st Century Challenges
  37. Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-Aryl Ether Cleavage Pathway fromSphingobiumsp. SYK-6
  38. Different Functions of Phylogenetically Distinct Bacterial Complex I Isozymes
  39. Electron Partitioning in Anoxic Phototrophic Bacteria
  40. Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin
  41. A unified initiative to harness Earth's microbiomes
  42. A Cardiolipin-Deficient Mutant of Rhodobacter sphaeroides Has an Altered Cell Shape and Is Impaired in Biofilm Formation
  43. Metabolism of Multiple Aromatic Compounds in Corn Stover Hydrolysate byRhodopseudomonas palustris
  44. Phylogenomic Analysis and Predicted Physiological Role of the Proton-Translocating NADH:Quinone Oxidoreductase (Complex I) Across Bacteria
  45. Oxygen-Dependent Regulation of Bacterial Lipid Production
  46. An Integrated Approach to Reconstructing Genome-Scale Transcriptional Regulatory Networks
  47. CceR and AkgR Regulate Central Carbon and Energy Metabolism in Alphaproteobacteria
  48. Global Analysis of Photosynthesis Transcriptional Regulatory Networks
  49. Quantifying the effects of light intensity on bioproduction and maintenance energy during photosynthetic growth of Rhodobacter sphaeroides
  50. A Group of Sequence-Related Sphingomonad Enzymes Catalyzes Cleavage of β-Aryl Ether Linkages in Lignin β-Guaiacyl and β-Syringyl Ether Dimers
  51. Development of a GC/Quadrupole-Orbitrap Mass Spectrometer, Part I: Design and Characterization
  52. Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
  53. Synthesis and scavenging role of furan fatty acids
  54. A Rhodobacter sphaeroides Protein Mechanistically Similar to Escherichia coli DksA Regulates Photosynthetic Growth
  55. Global Responses of Bacteria to Oxygen Deprivation
  56. Stereochemical Features of Glutathione-dependent Enzymes in theSphingobiumsp. Strain SYK-6 β-Aryl Etherase Pathway
  57. Global insights into energetic and metabolic networks in Rhodobacter sphaeroides
  58. Benzoyl Coenzyme A Pathway-Mediated Metabolism of meta-Hydroxy-Aromatic Acids in Rhodopseudomonas palustris
  59. Chemistry and combustion of fit-for-purpose biofuels
  60. Interview with Professor Timothy Donohue
  61. Proteins Needed to Activate a Transcriptional Response to the Reactive Oxygen Species Singlet Oxygen
  62. Revised Sequence and Annotation of the Rhodobacter sphaeroides 2.4.1 Genome
  63. Convergence of the Transcriptional Responses to Heat Shock and Singlet Oxygen Stresses
  64. Conservation of thiol-oxidative stress responses regulated by SigR orthologues in actinomycetes
  65. Maximizing reductant flow into microbial H2 production
  66. Extracytoplasmic function σ factors of the widely distributed group ECF41 contain a fused regulatory domain
  67. Signal Correlations in Ecological Niches Can Shape the Organization and Evolution of Bacterial Gene Regulatory Networks
  68. Pathways Involved in Reductant Distribution during Photobiological H2Production by Rhodobacter sphaeroides
  69. Great Lakes Bioenergy Research Center
  70. Q&A roundtable on US bioenergy research
  71. iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network
  72. Features of Rhodobacter sphaeroides ChrR Required for Stimuli to Promote the Dissociation of σE/ChrR Complexes
  73. Optimizing ethanol production selectivity
  74. An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity
  75. Reconstruction of the Core and Extended Regulons of Global Transcription Factors
  76. chipD: a web tool to design oligonucleotide probes for high-density tiling arrays
  77. H-NOX–mediated nitric oxide sensing modulates symbiotic colonization by Vibrio fischeri
  78. The US Department of Energy Great Lakes Bioenergy Research Center: Midwestern Biomass as a Resource for Renewable Fuels
  79. Electron Partitioning During Light- and Nutrient-Powered Hydrogen Production by Rhodobacter sphaeroides
  80. Bacterial responses to photo-oxidative stress
  81. Targeted σ factor turnover inserts negative control into a positive feedback loop
  82. Purple Bacterial Genomics
  83. Organization and Evolution of the Biological Response to Singlet Oxygen Stress
  84. Hierarchical Regulation of Photosynthesis Gene Expression by the Oxygen-Responsive PrrBA and AppA-PpsR Systems of Rhodobacter sphaeroides
  85. A Computational Strategy to Analyze Label-Free Temporal Bottom-Up Proteomics Data §
  86. Microbes in the Energy Grid
  87. Development of a solar-powered microbial fuel cell
  88. Identification of proteins involved in formaldehyde metabolism by Rhodobacter sphaeroides
  89. A Conserved Structural Module Regulates Transcriptional Responses to Diverse Stress Signals in Bacteria
  90. Proteomic Characterization of the Rhodobacter sphaeroides 2.4.1 Photosynthetic Membrane: Identification of New Proteins
  91. The Molecular Basis for Metabolic and Energetic Diversity
  92. Development of the bacterial photosynthetic apparatus
  93. Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes
  94. Microorganisms and clean energy
  95. Activity of Rhodobacter sphaeroides RpoHII, a Second Member of the Heat Shock Sigma Factor Family
  96. Application of the Accurate Mass and Time Tag Approach to the Proteome Analysis of Sub-cellular Fractions Obtained from Rhodobacter s phaeroides 2.4.1. Aerobic and Photosynthetic Cell Cultures
  97. Activation of the Global Gene Regulator PrrA (RegA) fromRhodobacter sphaeroides†
  98. In Vitro and In Vivo Analysis of the Role of PrrA in Rhodobacter sphaeroides 2.4.1 hemA Gene Expression
  99. Mutational analysis of the C-terminal domain of the Rhodobacter sphaeroides response regulator PrrA
  100. Identification of Genes Required for Recycling Reducing Power during Photosynthetic Growth
  101. A transcriptional response to singlet oxygen, a toxic byproduct of photosynthesis
  102. Microbial Formaldehyde Oxidation
  103. Positive and Negative Transcriptional Regulators of Glutathione-Dependent Formaldehyde Metabolism
  104. Policy proposal for publication of papers with data sets from genome-wide studies
  105. Interactions Between the Rhodobacter sphaeroides ECF Sigma Factor, σ E , and its Anti-sigma Factor, ChrR
  106. Differences in two Pseudomonas aeruginosa cbb3 cytochrome oxidases
  107. Whole-Genome Shotgun Optical Mapping of Rhodobacter sphaeroides strain 2.4.1 and Its Use for Whole-Genome Shotgun Sequence Assembly
  108. The role of zinc in function of the Rhodobacter sphaeroides anti-sigma factor ChrR
  109. Features of Rhodobacter sphaeroides CcmFH
  110. Purification of Rhodobacter sphaeroides RNA Polymerase and Its Sigma Factors
  111. Pseudomonas aeruginosa RoxR, a response regulator related to Rhodobacter sphaeroides PrrA, activates expression of the cyanide-insensitive terminal oxidase
  112. Transcriptional Activation of the Rhodobacter sphaeroides Cytochrome c2 Gene P2 Promoter by the Response Regulator PrrA
  113. Link between the Membrane-Bound Pyridine Nucleotide Transhydrogenase and Glutathione-Dependent Processes in Rhodobacter sphaeroides
  114. The importance of zinc-binding to the function of Rhodobacter sphaeroides ChrR as an anti-sigma factor
  115. Roles for the Rhodobacter sphaeroidesCcmA and CcmG Proteins
  116. Characterization of Rhodobacter sphaeroides Cytochrome c2 Proteins with Altered Heme Attachment Sites
  117. The Rhodobacter sphaeroides ECF sigma factor, σE, and the target promoters cycA P3 and rpoE P1
  118. Activation of the cycA P2 promoter for the Rhodobacter sphaeroides cytochrome c2 gene by the photosynthesis response regulator
  119. Transcription Activation by CooA, the CO-sensing Factor fromRhodospirillum rubrum: THE INTERACTION BETWEEN CooA AND THE C-TERMINAL DOMAIN OF THE   SUBUNIT OF RNA POLYMERASE
  120. Pathways for transcriptional activation of a glutathione-dependent formaldehyde dehydrogenase gene 1 1Edited by M. Gottesman
  121. Function of a Glutathione-Dependent Formaldehyde Dehydrogenase inRhodobacter sphaeroidesFormaldehyde Oxidation and Assimilation†
  122. Eubacterial signal transduction by ligands of the mammalian peripheral benzodiazepine receptor complex
  123. Molecular phylogeny of Archaea from soil
  124. Reactions of Isocytochrome c 2 in the Photosynthetic Electron Transfer Chain of Rhodobacter sphaeroides †
  125. Genetic Analysis of Photosynthetic Membrane Biogenesis in Rhodobacter sphaeroides
  126. δ-Aminolevulinate couples cycA transcription to changes in heme availability in Rhodobacter sphaeroides
  127. Regulation of a cytochrome c2 isoform in wild-type and cytochrome c2 mutant strains of Rhodobacter sphaeroides
  128. Genetic and physical mapping of the Rhodobacter sphaeroides photosynthetic gene cluster from R-prime pWS2
  129. [22] Genetic techniques in rhodospirillaceae
  130. Soluble Cytochrome Synthesis in Rhodobacter Sphaeroides
  131. Synthesis ofRhodobacter sphaeroidescytochromec2inEscherichia coli
  132. Phenotypic and genetic characterization of cytochrome c2-deficient mutants of Rhodobacter sphaeroides
  133. The puf operon region of Rhodobacter sphaeroides
  134. The puf operon region of Rhodobacter sphaeroides
  135. Specificity of the attenuation response of the threonine operon of Escherichia coli is determined by the threonine and isoleucine codons in the leader transcript
  136. Enzymes of Glutamate and Glutamine Biosynthesis in Bacillus licheniformis
  137. Biosynthesis of the photosynthetic membranes of rhodopseudomonas sphaeroides
  138. Purification and characterization of an N-acylphosphatidylserine from Rhodopseudomonas sphaeroides
  139. A new and specific assay for ammonia and glutamine sensitive to 100 pmol
  140. Use of an adenosine triphosphate analog, adenylyl imidodiphosphate, to evaluate adenosine triphosphate-dependent reactions in mitochondria
  141. Cytochromes, Iron-Sulfur, and Copper Proteins Mediating Electron Transfer from the Cyt bc1 Complex to Photosynthetic Reaction Center Complexes