All Stories

  1. Prediction pipeline for discovery of regulatory motifs associated with Brugia malayi molting

    Article • PLoS Neglected Tropical Diseases, June 2020, PLOS

    Professor Elodie Ghedin

  2. Topographic Diversity of the Respiratory Tract Mycobiome and Alteration in HIV and Lung Disease

    Article • American Journal of Respiratory and Critical Care Medicine, April 2015, American Thoracic Society

    Professor Elodie Ghedin

  3. Intrahost Dynamics of Antiviral Resistance in Influenza A Virus Reflect Complex Patterns of Segment Linkage, Reassortment, and Natural Selection

    Article • mBio, April 2015, ASM Journals

    Professor Elodie Ghedin

  4. Genetic diversity of the 2013–14 human isolates of influenza H7N9 in China

    Article • BMC Infectious Diseases, February 2015, Springer Science + Business Media

    Professor Elodie Ghedin

  5. Potential involvement of Brugia malayi cysteine proteases in the maintenance of the endosymbiotic relationship with Wolbachia

    Article • International Journal for Parasitology Drugs and Drug Resistance, December 2014, Elsevier

    Professor Elodie Ghedin

  6. Cyclic Avian Mass Mortality in the Northeastern United States Is Associated with a Novel Orthomyxovirus

    Article • Journal of Virology, November 2014, ASM Journals

    Professor Elodie Ghedin, Dr Andrew B Allison, Dr Hon S Ip

  7. Identification and Analysis of Ingi-Related Retroposons in the Trypanosomatid Genomes

    Article • October 2014, Springer Science + Business Media

    Professor Elodie Ghedin

  8. A large-scale immuno-epidemiological simulation of influenza A epidemics

    Article • BMC Public Health, September 2014, Springer Science + Business Media

    Professor Elodie Ghedin

  9. The Microbiome and the Lung

    Article • Annals of the American Thoracic Society, August 2014, American Thoracic Society

    Professor Elodie Ghedin

  10. Emerging and Resistant Infections

    Article • Annals of the American Thoracic Society, August 2014, American Thoracic Society

    Professor Elodie Ghedin

  11. Panning for molecular gold in whipworm genomes

    Article • Nature Genetics, June 2014, Springer Science + Business Media

    Professor Elodie Ghedin

  12. Mesoniviruses are mosquito-specific viruses with extensive geographic distribution and host range

    Article • Virology Journal, May 2014, Springer Science + Business Media

    Professor Nikos Vasilakis, Professor Elodie Ghedin

  13. Deliberate Attenuation of Chikungunya Virus by Adaptation to Heparan Sulfate-Dependent Infectivity: A Model for Rational Arboviral Vaccine Design

    Article • PLoS Neglected Tropical Diseases, February 2014, PLOS

    Professor Elodie Ghedin

  14. Genome Scale Evolution of Myxoma Virus Reveals Host-Pathogen Adaptation and Rapid Geographic Spread

    Article • Journal of Virology, September 2013, ASM Journals

    Professor Elodie Ghedin

  15. Niakha virus: A novel member of the family Rhabdoviridae isolated from phlebotomine sandflies in Senegal

    Article • Virology, September 2013, Elsevier

    Professor Nikos Vasilakis, Professor Elodie Ghedin

  16. Comparative Analysis of the Complete Genome Sequence of the California MSW Strain of Myxoma Virus Reveals Potential Host Adaptations

    Article • Journal of Virology, August 2013, ASM Journals

    Professor Elodie Ghedin

  17. Mammalian Adaptation in the PB2 Gene of Avian H5N1 Influenza Virus

    Article • Journal of Virology, July 2013, ASM Journals

    Professor Elodie Ghedin

  18. Use of bronchoalveolar lavage to assess the respiratory microbiome: signal in the noise

    Article • The Lancet Respiratory Medicine, July 2013, Elsevier

    Professor Elodie Ghedin

  19. Sequence Analysis of In Vivo Defective Interfering-Like RNA of Influenza A H1N1 Pandemic Virus

    Article • Journal of Virology, May 2013, ASM Journals

    Professor Elodie Ghedin, Dr. Vicente Soriano

  20. Widespread Colonization of the Lung byTropheryma whippleiin HIV Infection

    Article • American Journal of Respiratory and Critical Care Medicine, May 2013, American Thoracic Society

    Professor Elodie Ghedin

  21. Comparison of the Respiratory Microbiome in Healthy Nonsmokers and Smokers

    Article • American Journal of Respiratory and Critical Care Medicine, May 2013, American Thoracic Society

    Professor Elodie Ghedin, Professor Patrick D Schloss, Professor Thomas M Schmidt

  22. A Potential Role for the Interaction of Wolbachia Surface Proteins with the Brugia malayi Glycolytic Enzymes and Cytoskeleton in Maintenance of Endosymbiosis

    Article • PLoS Neglected Tropical Diseases, April 2013, PLOS

    Professor Elodie Ghedin

  23. The human mycobiome in health and disease

    Article • Genome Medicine, January 2013, Springer Science + Business Media

    Professor Elodie Ghedin

  24. Evolutionary History and Attenuation of Myxoma Virus on Two Continents

    Article • PLoS Pathogens, October 2012, PLOS

    Professor Elodie Ghedin

  25. Large-scale sequencing and the natural history of model human RNA viruses

    Article • Future Virology, June 2012, Future Medicine

    Professor Elodie Ghedin

  26. Linking population-level and host-level models of influenza A virus

    Article • Journal of Critical Care, June 2012, Elsevier

    Professor Elodie Ghedin

  27. Comparison Of The Respiratory Microbiome In HIV-Infected And HIV-Uninfected Individuals

    Article • May 2012, American Thoracic Society

    Professor Elodie Ghedin

  28. Filarial and Wolbachia genomics

    Article • Parasite Immunology, February 2012, Wiley

    Professor Elodie Ghedin

  29. A Deep Sequencing Approach to Comparatively Analyze the Transcriptome of Lifecycle Stages of the Filarial Worm, Brugia malayi

    Article • PLoS Neglected Tropical Diseases, December 2011, PLOS

    Professor Elodie Ghedin

  30. Analysis of transcriptional regulation of tetracycline responsive genes in Brugia malayi

    Article • Molecular and Biochemical Parasitology, December 2011, Elsevier

    Professor Elodie Ghedin

  31. Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds

    Article • Ecology Letters, October 2011, Wiley

    Professor Elodie Ghedin, Dr Hon S Ip

  32. It's a small world after all—viral genomics and the global dominance of viruses

    Article • Current Opinion in Virology, October 2011, Elsevier

    Professor Elodie Ghedin, Dr Chris Upton

  33. Interaction of a Wolbachia WSP-like protein with a nuclear-encoded protein of Brugia malayi

    Article • International Journal for Parasitology, August 2011, Elsevier

    Professor Elodie Ghedin

  34. Genomic and Protein Structural Maps of Adaptive Evolution of Human Influenza A Virus to Increased Virulence in the Mouse

    Article • PLoS ONE, June 2011, PLOS

    Professor Elodie Ghedin

  35. High-Throughput Sequencing Of MicroRNA In Idiopathic Pulmonary Fibrosis

    Article • May 2011, American Thoracic Society

    Professor Elodie Ghedin

  36. In vivo transfection of developmentally competent Brugia malayi infective larvae

    Article • International Journal for Parasitology, March 2011, Elsevier

    Professor Elodie Ghedin

  37. The Human Lung Microbiome

    Article • October 2010, Springer Science + Business Media

    Professor Elodie Ghedin

  38. Functional analysis of putative operons in Brugia malayi

    Article • International Journal for Parasitology, January 2010, Elsevier

    Professor Elodie Ghedin

  39. The early diversification of influenza A/H1N1pdm

    Article • PLoS Currents, November 2009, PLOS

    Dr Martha Irene Nelson, Professor Elodie Ghedin

  40. Helminth Genomics: The Implications for Human Health

    Article • PLoS Neglected Tropical Diseases, October 2009, PLOS

    Professor Elodie Ghedin

  41. Brugia malayi Gene Expression in Response to the Targeting of the Wolbachia Endosymbiont by Tetracycline Treatment

    Article • PLoS Neglected Tropical Diseases, October 2009, PLOS

    Professor Elodie Ghedin

  42. A multi-reservoir model of influenza evolution

    Article • Journal of Critical Care, September 2009, Elsevier

    Professor Elodie Ghedin

  43. The genome of the blood fluke Schistosoma mansoni

    Article • Nature, July 2009, Springer Science + Business Media

    Professor Julian Parkhill, Professor Elodie Ghedin

  44. The genome of Brugia malayi — All worms are not created equal

    Article • Parasitology International, March 2009, Elsevier

    Professor Elodie Ghedin

  45. Transcriptomes and pathways associated with infectivity, survival and immunogenicity in Brugia malayi L3

    Article • BMC Genomics, January 2009, Springer Science + Business Media

    Professor Elodie Ghedin

  46. The role of RNA folding free energy in the evolution of the polymerase genes of the influenza A virus

    Article • Genome Biology, January 2009, Springer Science + Business Media

    Professor Elodie Ghedin

  47. Molecular Epidemiology of A/H3N2 and A/H1N1 Influenza Virus during a Single Epidemic Season in the United States

    Article • PLoS Pathogens, August 2008, PLOS

    Dr Martha Irene Nelson, Professor Elodie Ghedin

  48. The Evolutionary Genetics and Emergence of Avian Influenza Viruses in Wild Birds

    Article • PLoS Pathogens, May 2008, PLOS

    Professor Elodie Ghedin

  49. Role of transposable elements in trypanosomatids

    Article • Microbes and Infection, May 2008, Elsevier

    Professor Elodie Ghedin

  50. Multiple Reassortment Events in the Evolutionary History of H1N1 Influenza A Virus Since 1918

    Article • PLoS Pathogens, February 2008, PLOS

    Dr Martha Irene Nelson, Professor Elodie Ghedin

  51. Viral genome sequencing by random priming methods

    Article • BMC Genomics, January 2008, Springer Science + Business Media

    Professor Elodie Ghedin

  52. Genes encoding putative biogenic amine receptors in the parasitic nematode Brugia malayi

    Article • Invertebrate Neuroscience, November 2007, Springer Science + Business Media

    Professor Elodie Ghedin

  53. Mining Predicted Essential Genes of Brugia malayi for Nematode Drug Targets

    Article • PLoS ONE, November 2007, PLOS

    Professor Elodie Ghedin

  54. Sequences necessary for trans-splicing in transiently transfected Brugia malayi

    Article • Molecular and Biochemical Parasitology, November 2007, Elsevier

    Professor Elodie Ghedin

  55. Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation

    Article • Virology, June 2007, Elsevier

    Professor Elodie Ghedin

  56. Genome Analysis Linking Recent European and African Influenza (H5N1) Viruses

    Article • Emerging Infectious Diseases, May 2007, Centers for Disease Control and Prevention (CDC)

    Professor Elodie Ghedin

  57. Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus

    Article • Virology, February 2007, Elsevier

    Professor Elodie Ghedin

  58. Members of a Large Retroposon Family Are Determinants of Post-Transcriptional Gene Expression in Leishmania

    Article • PLoS Pathogens, January 2007, PLOS

    Professor Elodie Ghedin

  59. Detection of HHV-6B in post-mortem central nervous system tissue of a post-bone marrow transplant recipient: a multi-virus array analysis

    Article • Journal of Clinical Virology, December 2006, Elsevier

    Professor Elodie Ghedin

  60. Differential HHV-6A gene expression in T cells and primary human astrocytes based on multi-virus array analysis

    Article • Glia, June 2006, Wiley

    Professor Elodie Ghedin

  61. Shared data are key to beating threat from flu

    Article • March 2006, Nature

    Professor Elodie Ghedin

  62. Evolution of non-LTR retrotransposons in the trypanosomatid genomes: Leishmania major has lost the active elements

    Article • Molecular and Biochemical Parasitology, February 2006, Elsevier

    Professor Elodie Ghedin

  63. Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus

    Article • PLoS Pathogens, January 2006, PLOS

    Dr Martha Irene Nelson, Professor Elodie Ghedin

  64. Correction: Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus

    Article • PLoS Pathogens, January 2006, PLOS

    Professor Elodie Ghedin

  65. Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution

    Article • October 2005, Nature

    Professor Elodie Ghedin

  66. Whole-Genome Analysis of Human Influenza A Virus Reveals Multiple Persistent Lineages and Reassortment among Recent H3N2 Viruses

    Article • PLoS Biology, July 2005, PLOS

    Professor Elodie Ghedin

  67. The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease

    Article • Science, July 2005, American Association for the Advancement of Science

    Professor Elodie Ghedin, Daniel Nilsson, Dr Rick L Tarleton

  68. Comparative Genomics of Trypanosomatid Parasitic Protozoa

    Article • Science, July 2005, American Association for the Advancement of Science

    Professor Elodie Ghedin, Daniel Nilsson

  69. The Genome of the African Trypanosome Trypanosoma brucei

    Article • Science, July 2005, American Association for the Advancement of Science

    Professor Elodie Ghedin, Prof Mark C Field, Professor Fred R. Opperdoes

  70. Genomic and proteomic approaches for Chagas’ disease: critical analysis of diagnostic methods

    Article • Expert Review of Molecular Diagnostics, July 2005, Taylor & Francis

    Professor Elodie Ghedin

  71. The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode

    Article • PLoS Biology, March 2005, PLOS

    Professor Elodie Ghedin, Dr Nikos C Kyrpides

  72. A virus with big ambitions

    Article • Trends in Microbiology, February 2005, Elsevier

    Professor Elodie Ghedin

  73. LdARF1 in Trafficking and Structural Maintenance of the trans-Golgi Cisternal Network in the Protozoan Pathogen Leishmania donovani

    Article • Traffic, September 2004, Wiley

    Professor Elodie Ghedin

  74. A gene family of cathepsin L-like proteases of filarial nematodes are associated with larval molting and cuticle and eggshell remodeling

    Article • Molecular and Biochemical Parasitology, August 2004, Elsevier

    Professor Elodie Ghedin

  75. First sequenced genome of a parasitic nematode

    Article • Trends in Parasitology, April 2004, Elsevier

    Professor Elodie Ghedin

  76. Gene synteny and evolution of genome architecture in trypanosomatids

    Article • Molecular and Biochemical Parasitology, April 2004, Elsevier

    Professor Elodie Ghedin, Prof. Jonathan A. Eisen

  77. Secretory and Endocytic Pathways Converge in a Dynamic Endosomal System in a Primitive Protozoan

    Article • Traffic, March 2001, Wiley

    Professor Elodie Ghedin

  78. Inducible Expression of Suicide Genes in Leishmania donovani Amastigotes

    Article • Journal of Biological Chemistry, September 1998, American Society for Biochemistry & Molecular Biology (ASBMB)

    Professor Elodie Ghedin

  79. A2rel: a constitutively expressed Leishmania gene linked to an amastigote-stage-specific gene1Note: The sequence is also available on GenBank™, accession number AF016403.1

    Article • Molecular and Biochemical Parasitology, May 1998, Elsevier

    Professor Elodie Ghedin

  80. Identification and overexpression of the A2 amastigote-specific protein in Leishmania donovani

    Article • Molecular and Biochemical Parasitology, June 1996, Elsevier

    Professor Elodie Ghedin

  81. Gemina: A Web-Based Epidemiology and Genomic Metadata System Designed to Identify Infectious Agents

    Article • Springer Science + Business Media

    Professor Elodie Ghedin