All Stories

  1. HCV genotyping and rational computational designing of an immunogenic multiepitope vaccine against genotype 3a

    Article • Journal of Computer-Aided Molecular Design, November 2025, Springer Science + Business Media

    Muhammad Idrees

  2. Development of a Multiple Epitopes‐Based Dengue Vaccine: An Immunoinformatics Approach and Insights From Pakistani Population Genetics

    Article • Microbiology and Immunology, October 2025, Wiley

    Muhammad Idrees

  3. LncRNA HULC and LncRNA HOTAIR expression profile are strong predictors of direct antiviral agents therapy response in chronic Hepatitis C Virus-infected patients

    Article • Egyptian Liver Journal, August 2025, Springer Science + Business Media

    Muhammad Idrees

  4. Exploring HPV-linked head and neck cancer in Southern Punjab, Pakistan: Insights from HPV-16 phylogenetic analysis

    Article • Journal of Taibah University Medical Sciences, April 2025, Elsevier

    Muhammad Idrees

  5. Polymorphisms in IL-10- and IL-22-Binding Protein Genes as Genetic Predictors of the Direct-Acting Antivirals Treatment Response in Patients with Chronic Hepatitis C Virus

    Article • Journal of Interferon & Cytokine Research, March 2025, Mary Ann Liebert Inc

    Muhammad Idrees

  6. Mammalian Cell Expression of a Fully Functional Recombinant E6 Protein Encoded by HPV16 Isolate from Pakistani Population

    Article • Pakistan Journal of Zoology, January 2025, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  7. Phylogenetic Analysis of E6 and E7 Gene of Human Papillomavirus 16 Variants Isolated from Pakistani Population

    Article • Pakistan Journal of Zoology, January 2025, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  8. The emerging role of epigenetics (DNA methylation) in hepatitis C virus-induced hepatocellular carcinoma

    Article • Gastrointestinal Tumors, January 2025, Maximum Academic Press

    Muhammad Idrees

  9. Molecular epidemiology and genetic characterization of hepatitis B virus in two major provinces of Pakistan

    Article • Archives of Virology, November 2024, Springer Science + Business Media

    Muhammad Idrees

  10. Computational prediction of a phage cocktail active against multidrug-resistant bacteria

    Article • F1000Research, October 2024, Faculty of 1000, Ltd.

    Muhammad Idrees

  11. Coincidence of HCV and chronic kidney disease-a systematic review and meta-analysis

    Article • BMC Public Health, October 2024, Springer Science + Business Media

    Muhammad Idrees

  12. The Factors Associated With Mutant Epidermal Growth Factor Receptor Positivity in Patients With Lung Cancer: A Study From a Tertiary Care Center in Pakistan

    Article • Cureus, September 2024, Springer Science + Business Media

    Muhammad Idrees

  13. Regulatory pathways and therapeutic potential of PDE4 in liver pathophysiology

    Article • Life Sciences, May 2024, Elsevier

    Muhammad Idrees

  14. Improving Access to Anti-HDV Testing: Development and Validation of an Affordable In-House ELISA Assay

    Article • ACS Omega, April 2024, American Chemical Society (ACS)

    Muhammad Idrees

  15. Exploring the Concordance Between High-Risk Human Papillomavirus Infections in Cervical and Oral Sites Among Females: A Cross-Sectional Study in Punjab, Pakistan

    Article • JCO Global Oncology, April 2024, American Society of Clinical Oncology (ASCO)

    Muhammad Idrees

  16. Assessment of ubiquitin specific Peptidase-18 gene in peripheral blood of chronic hepatitis C patients treated with direct-acting antiviral drugs

    Article • Heliyon, January 2024, Elsevier

    Muhammad Idrees

  17. A Comparative Analysis of Baseline Variables in Responder and Non-Responder Groups of Chronic Hepatitis C patients

    Article • Pakistan Journal of Zoology, January 2024, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  18. Potential Role of Recombinant Capsid Protein of Dengue Virus Serotype 2 in the Development of an In-House Elisa Based Detection of Infection

    Article • Pakistan Journal of Zoology, January 2024, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  19. Quasispecies Analysis Through NGS and Identification of Escape Mutation in a Family Infected with Hepatitis B Virus: A Study from Lahore, Pakistan

    Article • Pakistan Journal of Zoology, January 2024, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  20. An ncRNA transcriptomics-based approach to design siRNA molecules against SARS-CoV-2 double membrane vesicle formation and accessory genes

    Article • BMC Infectious Diseases, December 2023, Springer Science + Business Media

    Muhammad Idrees

  21. Whole-genome analysis and evolutionary characterization of cervical and oral human papillomavirus 16

    Article • Experimental Biology and Medicine, December 2023, Frontiers

    Muhammad Idrees

  22. Harnessing Nature’s Gifts:Salix nigraand Its Potential for Combating Hepatitis C Virus (HCV)

    Article • ACS Omega, October 2023, American Chemical Society (ACS)

    Muhammad Idrees

  23. Seroprevalence of SARS-CoV-2: Insights into the epidemiology of the pandemic

    Article • Journal of Infection and Public Health, August 2023, Elsevier

    Muhammad Idrees

  24. Expression Profiling of the Tripartite Motif Family Genes in Chronic Hepatitis C Patients

    Article • ACS Omega, July 2023, American Chemical Society (ACS)

    Muhammad Idrees

  25. Risk of adverse outcomes following treatment with direct acting antiviral drugs in HCV infected patients with liver cirrhosis

    Article • Heliyon, May 2023, Elsevier

    Muhammad Idrees

  26. Transcriptional Analysis of TP53 Gene in Chronic Hepatitis C Patients Treated with Sofosbuvir, Daclatasvir, Pegylated Interferon, and Ribavirin

    Article • ACS Omega, April 2023, American Chemical Society (ACS)

    Muhammad Idrees

  27. Structural Analysis and Epitope Prediction of S2 Domain of SARS-CoV-2, Conservation Analysis Among Major Variants

    Article • Viral Immunology, March 2023, Mary Ann Liebert Inc

    Muhammad Idrees

  28. The History and Current Killings of Polio Vaccinators in Pakistan: A Need for Targeted Surveillance Strategy

    Article • Asia Pacific Journal of Public Health, March 2023, SAGE Publications

    Muhammad Idrees

  29. Genotypic distribution of human papillomavirus and phylogenetic analysis of E6 and E7 gene of HR-HPV variants isolated from Pakistani population

    Article • Medicine, January 2023, Wolters Kluwer Health

    Muhammad Idrees

  30. Frequency of Hepatitis D Viral Infection in Chronic Hepatitis B Patients in Pakistan

    Article • Pakistan Journal of Zoology, January 2023, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  31. Identification of Predictive Factors in Chronic Hepatitis C Patients with Non-Infected Individuals: A Comparative Analysis

    Article • Pakistan Journal of Zoology, January 2023, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  32. Methanolic Extract of Neem Plant Inhibits NS3 and NS5A Nonstructural Proteins of HCV 3A Genotype

    Article • Pakistan Journal of Zoology, January 2023, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  33. An Immunoinformatics Approach to Design a Potent Multi-Epitope Vaccine against Asia-1 Genotype of Crimean–Congo Haemorrhagic Fever Virus Using the Structural Glycoproteins as a Target

    Article • Vaccines, December 2022, MDPI AG

    Mr Muhammad Usman Mirza, Muhammad Idrees

  34. A review on hepatitis C virus: role of viral and host-cellular factors in replication and existing therapeutic strategies

    Article • Egyptian Liver Journal, December 2022, Springer Science + Business Media

    Muhammad Idrees

  35. Adenovirus Vector System: Construction, History and Therapeutic Applications

    Article • BioTechniques, December 2022, Taylor & Francis

    Muhammad Idrees

  36. Molecular characterization of recombinant premembrane protein of dengue virus serotype‐2 for development of diagnostic assay

    Article • Journal of Basic Microbiology, November 2022, Wiley

    Muhammad Idrees

  37. Hepatitis C virus transmission cluster among injection drug users in Pakistan

    Article • PLOS One, July 2022, PLOS

    Muhammad Idrees

  38. Molecular characterization and risk factors of oral high‐risk human papillomavirus among females in Punjab, Pakistan

    Article • Journal of Medical Virology, June 2022, Wiley

    Muhammad Idrees

  39. P2X4 receptors mediate induction of antioxidants, fibrogenic cytokines and ECM transcripts; in presence of replicating HCV in in vitro setting: An insight into role of P2X4 in fibrosis

    Article • PLOS One, May 2022, PLOS

    Muhammad Idrees

  40. Immune-related therapeutics: an update on antiviral drugs and vaccines to tackle the COVID-19 pandemic

    Article • Osong Public Health and Research Perspectives, April 2022, Korea Disease Control and Prevention Agency

    Muhammad Idrees

  41. A review on corona virus pandemic: Update on epidemiology, diagnosis, and treatment

    Article • Pure and Applied Biology, March 2022, Bolan Society for Pure and Applied Biology (BSPAB)

    Muhammad Idrees

  42. Insights into the Structure, Replication, and Pathogenesis of the Severe Acute Respiratory Syndrome Coronavirus 2

    Article • Re GEN Open, January 2022, Mary Ann Liebert Inc

    Muhammad Idrees

  43. Bacterial Expression and Purification of Antigenic Recombinant Protein Encoded by Hepatitis Delta Virus Antigen of Pakistani Isolate

    Article • Pakistan Journal of Zoology, January 2022, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  44. Patient with Suspected COVID-19 Infection Tests Negative in Nasopharyngeal Swabs but is Confirmed by Laboratory Tests and Chest CT Scan: A Case Report

    Article • Pakistan Journal of Zoology, January 2022, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  45. Current Status of Therapeutic Approaches and Vaccines for SARS-CoV-2

    Article • Future Microbiology, November 2021, Taylor & Francis

    Muhammad Idrees

  46. Next-generation sequencing studies on the E1-HVR1 region of hepatitis C virus (HCV) from non-high-risk HCV patients living in Punjab and Khyber Pakhtunkhwa, Pakistan

    Article • Archives of Virology, August 2021, Springer Science + Business Media

    Muhammad Idrees

  47. Cytokine storm syndrome in SARS-CoV-2: a review

    Article • Zeitschrift für Naturforschung C, August 2021, De Gruyter

    Muhammad Idrees

  48. Early detection of MDR Mycobacterium tuberculosis mutations in Pakistan

    Article • Scientific Reports, August 2021, Springer Science + Business Media

    Muhammad Idrees

  49. Distribution of High-risk Human Papillomavirus Genotypes in Cervical Secretions in Punjab

    Article • Journal of College of Physicians And Surgeons Pakistan, July 2021, College of Physicians and Surgeons Pakistan

    Muhammad Idrees

  50. MMTV-LIKE virus and c-myc over-expression are associated with invasive breast cancer

    Article • Infection Genetics and Evolution, July 2021, Elsevier

    Muhammad Idrees

  51. Seroprevalence of SARS-CoV-2 in Pakistan: an update on epidemiological trends

    Article • Zeitschrift für Naturforschung C, June 2021, De Gruyter

    Muhammad Idrees

  52. CRISPR-Cas13a mediated targeting of hepatitis C virus internal-ribosomal entry site (IRES) as an effective antiviral strategy

    Article • Biomedicine & Pharmacotherapy, April 2021, Elsevier

    Muhammad Idrees

  53. Identification and expression analysis of antigenic sites of hepatitis C virus genotype 3a NS3 and NS5A genes of local isolate

    Article • Egyptian Liver Journal, March 2021, Springer Science + Business Media

    Muhammad Idrees

  54. p53 and rb Promoter Methylation in Hepatitis C virus-related Chronic Hepatitis and Hepatocellular Carcinoma

    Article • Future Virology, January 2021, Taylor & Francis

    Muhammad Idrees

  55. Dengue Vaccines: Ongoing Challenges and Current Status in the Advancement of Different Candidates

    Article • Critical Reviews in Eukaryotic Gene Expression, January 2021, Begell House

    Muhammad Idrees

  56. Novel Coronavirus: A Review from Origin to Current Status of Therapeutic Strategies

    Article • Critical Reviews in Eukaryotic Gene Expression, January 2021, Begell House

    Muhammad Idrees

  57. Genome‐wide methylation profiling of HCV pathogenesis to develop diabetes and diabetic complications

    Article • Journal of Viral Hepatitis, December 2020, Wiley

    Muhammad Idrees

  58. Association of dupA, iceA, homB Genes of Helicobacter pylori with Gastritis, Peptic Ulcer Disease and Gastric Cancer

    Article • Journal of Pharmaceutical Research International, October 2020, Sciencedomain International

    Muhammad Idrees

  59. Peripheral Expression ofCXCL10Gene in Chronic Hepatitis C Patients Treated with Sofosbuvir, Daclatasvir, and Ribavirin

    Article • Journal of Interferon & Cytokine Research, June 2020, Mary Ann Liebert Inc

    Muhammad Idrees

  60. Comparing the risk of hypothyroidism in HCV patients treated with different DAA drugs combinations (sofosbuvir + interferon + ribavirin and sofosbuvir + daclatasvir + ribavirin)

    Article • Journal of Medical Virology, May 2020, Wiley

    Muhammad Idrees

  61. Blood-based gene expression profile of oxidative stress and antioxidant genes for identifying surrogate markers of liver tissue injury in chronic hepatitis C patients

    Article • Archives of Virology, February 2020, Springer Science + Business Media

    Muhammad Idrees

  62. Applications and hazards associated with carbon nanotubes in biomedical sciences

    Article • Inorganic and Nano-Metal Chemistry, February 2020, Taylor & Francis

    Muhammad Idrees

  63. Advancements in Developing an Effective and Preventive Dengue Vaccine

    Article • Future Virology, February 2020, Taylor & Francis

    Muhammad Idrees

  64. Expression of TRIM22 mRNA in chronic hepatitis C patients treated with direct‐acting antiviral drugs

    Article • Apmis, January 2020, Wiley

    Muhammad Idrees

  65. Association of Interleukin 28B Polymorphism with Clearance of Hepatitis C Virus: A Mini Review

    Article • Critical Reviews in Eukaryotic Gene Expression, January 2020, Begell House

    Muhammad Idrees

  66. Cervical cancer vaccination awareness and acceptance among the females of Punjab, Pakistan

    Article • Makara Journal of Health Research, January 2020, Universitas Indonesia, Directorate of Research and Public Service

    Muhammad Idrees

  67. Drug Resistance in Hepatitis C Virus: Future Prospects and Strategies to Combat It

    Article • Critical Reviews in Eukaryotic Gene Expression, January 2020, Begell House

    Muhammad Idrees

  68. Paradoxical Role of Dengue Virus Envelope Protein Domain III Antibodies in Dengue Virus Infection

    Article • Critical Reviews in Eukaryotic Gene Expression, January 2020, Begell House

    Muhammad Idrees

  69. Prevalence and Upcoming Threats of Chikungunya Virus in Pakistani Population

    Article • Pakistan Journal of Zoology, January 2020, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  70. Role of MicroRNAs in Establishing Latency of Human Immunodeficiency Virus

    Article • Critical Reviews in Eukaryotic Gene Expression, January 2020, Begell House

    Muhammad Idrees

  71. Herpes Simplex Virus Type 1 and Host Antiviral Immune Responses: An Update

    Article • Viral Immunology, December 2019, Mary Ann Liebert Inc

    Muhammad Idrees

  72. A novel avian isolate of hepatitis E virus from Pakistan

    Article • Virology Journal, November 2019, Springer Science + Business Media

    Muhammad Idrees

  73. Characterization of Hepatitis Delta Virus Among Pregnant Women of Pakistan

    Article • Viral Immunology, October 2019, Mary Ann Liebert Inc

    Muhammad Idrees

  74. Sequence Variability of HCV 3a Isolates Based On Core Gene in Patients From Lahore, Pakistan

    Article • Future Virology, October 2019, Taylor & Francis

    Muhammad Idrees

  75. Cosmopolitan A1 lineage of dengue virus serotype 2 is circulating in Pakistan: A study from 2017 dengue viral outbreak

    Article • Journal of Medical Virology, July 2019, Wiley

    Muhammad Idrees

  76. Scoping Review of Crimean-Congo Hemorrhagic Fever (CCHF) Literature and Implications of Future Research

    Article • Journal of College of Physicians And Surgeons Pakistan, June 2019, College of Physicians and Surgeons Pakistan

    Muhammad Idrees

  77. In silico structural elucidation of RNA-dependent RNA polymerase towards the identification of potential Crimean-Congo Hemorrhagic Fever Virus inhibitors

    Article • Scientific Reports, May 2019, Springer Science + Business Media

    Mr Muhammad Usman Mirza, Muhammad Idrees

  78. Advances in the role of HCV nonstructural protein 5a (NS5A) of 3a genotype in inducing insulin resistance by possible phosphorylation of AKT/PKB

    Article • Scientific Reports, April 2019, Springer Science + Business Media

    Muhammad Idrees

  79. Short article: Hepatitis C and G virus coinfection in Punjab, Pakistan: incidence and its correlation analysis with clinical data

    Article • European Journal of Gastroenterology & Hepatology, March 2019, Wolters Kluwer Health

    Muhammad Idrees

  80. The interplay between viruses and TRIM family proteins

    Article • Reviews in Medical Virology, January 2019, Wiley

    Muhammad Idrees

  81. Comparative Analysis of Immunological and Genomic Outcomes of Dengue Virus Outbreak in Pakistan

    Article • Pakistan Journal of Zoology, January 2019, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  82. HSV-1 Infection: Role of Viral Proteins and Cellular Receptors

    Article • Critical Reviews in Eukaryotic Gene Expression, January 2019, Begell House

    Muhammad Idrees

  83. Molecular Detection of Hepatitis E Virus in Layer Chickens: A Possible Public Health Risk in Pakistan

    Article • Pakistan Journal of Zoology, January 2019, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  84. Antigenic Peptide Prediction From E6 and E7 Oncoproteins of HPV Types 16 and 18 for Therapeutic Vaccine Design Using Immunoinformatics and MD Simulation Analysis

    Article • Frontiers in Immunology, December 2018, Frontiers

    Muhammad Idrees

  85. Evolution of efficacious pangenotypic hepatitis C virus therapies

    Article • Medicinal Research Reviews, December 2018, Wiley

    Muhammad Idrees

  86. Complete Genome Amplification and Sequencing of DENV-2 Pakistani Isolates: Analysis Reveals Molecular Evolution of DENV-2

    Article • Future Virology, December 2018, Taylor & Francis

    Muhammad Idrees

  87. Recent trends in molecular epidemiology of Hepatitis C virus in Mardan, KPK Pakistan

    Article • Infection Genetics and Evolution, December 2018, Elsevier

    Muhammad Idrees

  88. Perspectives towards antiviral drug discovery against Ebola virus

    Article • Journal of Medical Virology, November 2018, Wiley

    Mr Muhammad Usman Mirza, Muhammad Idrees

  89. Genetic diversity of Hepatitis C Virus in Pakistan using Next Generation Sequencing

    Article • Journal of Clinical Virology, November 2018, Elsevier

    Muhammad Idrees

  90. Prevalence of thyroid stimulating hormone dysfunction among sofosbuvir‐treated HCV‐infected patients: A real‐world clinical experience

    Article • Journal of Medical Virology, October 2018, Wiley

    Muhammad Idrees

  91. Tattooing trend: major cause of HCV transmission among youngsters

    Article • Infectious Diseases, October 2018, Taylor & Francis

    Braira Wahid, Muhammad Idrees

  92. Molecular epidemiology of hepatitis delta and hepatitis B viruses circulating in two major provinces (East and North-West) of Pakistan

    Article • Infection Genetics and Evolution, October 2018, Elsevier

    Muhammad Idrees

  93. Biomarkers for diagnosis of pre-eclampsia and endometriosis

    Article • Biomarkers in Medicine, September 2018, Future Medicine

    Braira Wahid, Muhammad Idrees

  94. An Overview of Cancer Immunotherapeutic Strategies

    Article • Immunotherapy, August 2018, Taylor & Francis

    Muhammad Idrees

  95. Poor glycemic control and abrupt onset of diabetes in HCV patients receiving direct-acting antiviral drugs: case series

    Article • Future Virology, July 2018, Future Medicine

    Braira Wahid, Muhammad Idrees

  96. Unexpected Response Profiles Seen in Hepatitis C Virus-Infected Patients Treated with Sofosbuvir Plus Ribavirin: Five Case Reports

    Article • Viral Immunology, July 2018, Mary Ann Liebert Inc

    Muhammad Idrees

  97. Study of promoter hypomethylation profiles of RAS oncogenes in hepatocellular carcinoma derived from hepatitis C virus genotype 3a in Pakistani population

    Article • Journal of Medical Virology, June 2018, Wiley

    Muhammad Idrees

  98. Poor response to direct-acting antiviral therapy in HCV-infected elderly population: a real-life cohort study based on GeneXpert® technology

    Article • Future Virology, June 2018, Future Medicine

    Braira Wahid, Muhammad Idrees

  99. Explosive Rise in Viral Infections Through Meat-Sellers

    Article • Jundishapur Journal of Microbiology, June 2018, Kowsar Medical Institute

    Muhammad Idrees

  100. Expression of SOCS1 and SOCS3 Genes in Interferon-Treated and Direct-Acting Antiviral Drugs-Treated Hepatitis C Patients

    Article • Journal of Interferon & Cytokine Research, June 2018, Mary Ann Liebert Inc

    Muhammad Idrees

  101. Role of altered immune cells in liver diseases: a review

    Article • Gastroenterología y Hepatología, June 2018, Elsevier

    Muhammad Idrees

  102. Successful treatment of HCV/TB co-infected patient with sofosbuvir and daclatasvir: a case report

    Article • Future Virology, April 2018, Future Medicine

    Braira Wahid, Muhammad Idrees

  103. Calculation of Wiener Indices of Thiazolides: The Potent Inhibitors of Hepatitis B Virus and Hepatitis C Virus Replication

    Article • Hepatitis Monthly, March 2018, Kowsar Medical Institute

    Muhammad Idrees

  104. An Increase in Expression of SOCS1 Gene with Increase in Hepatitis C Virus Viral Load

    Article • Journal of Interferon & Cytokine Research, March 2018, Mary Ann Liebert Inc

    Muhammad Idrees

  105. An updated systematic review of Zika virus-linked complications

    Article • Asian Pacific Journal of Tropical Medicine, January 2018, Medknow

    Muhammad Idrees

  106. Zika virus: Is Pakistan next?

    Article • Asian Pacific Journal of Tropical Medicine, January 2018, Medknow

    Muhammad Idrees

  107. Polymerase Chain Reaction-Based Detection Method Is Suitable for Dengue Infection During Epidemics

    Article • Viral Immunology, December 2017, Mary Ann Liebert Inc

    Muhammad Idrees

  108. Role of circulatory microRNAs in the pathogenesis of hepatitis C virus

    Article • VirusDisease, November 2017, Springer Science + Business Media

    Muhammad Idrees

  109. Selected hepatoprotective herbal medicines: Evidence from ethnomedicinal applications, animal models, and possible mechanism of actions

    Article • Phytotherapy Research, October 2017, Wiley

    Dr. IKRAM ULLAH, Mr Muhammad Ovais , Muhammad Idrees

  110. Thirty years of HIV in Pakistan: a systematic review of prevalence and current scenario

    Article • Future Virology, October 2017, Future Medicine

    Muhammad Ali, Muhammad Idrees

  111. Current status of therapeutic and vaccine approaches against Zika virus

    Article • European Journal of Internal Medicine, October 2017, Elsevier

    Muhammad Idrees

  112. Therapeutic Strategies of Clustered Regularly Interspaced Palindromic Repeats-Cas Systems for Different Viral Infections

    Article • Viral Immunology, October 2017, Mary Ann Liebert Inc

    Muhammad Idrees

  113. Molecular detection of Isoniazid, Rifampin and Ethambutol resistance to M. tuberculosis and M. bovis in multidrug resistant tuberculosis (MDR-TB) patients in Pakistan

    Article • Microbial Pathogenesis, September 2017, Elsevier

    Muhammad Idrees

  114. Prevalence of hepatitis-C virus genotypes and potential transmission risks in Malakand Khyber Pakhtunkhwa, Pakistan

    Article • Virology Journal, August 2017, Springer Science + Business Media

    Muhammad Idrees

  115. Rising relapse rate in hepatitis C virus type 3a-infected patients against sofosbuvir and ribavirin combination therapy: a Pakistani experience

    Article • European Journal of Gastroenterology & Hepatology, August 2017, Wolters Kluwer Health

    Muhammad Idrees

  116. Evaluation of three techniques for detection of IL28B SNP: A prognostic tool for HCV treatment outcome

    Article • Journal of Digestive Diseases, July 2017, Wiley

    Muhammad Idrees

  117. Emerging Viral Infections in Pakistan: Issues, Concerns, and Future Prospects

    Article • Health Security, June 2017, Mary Ann Liebert Inc

    Mr Muhammad Ovais , Muhammad Idrees

  118. Prevalence and Molecular Detection of Dengue Virus in 2013 Outbreak in KPK and Punjab, Pakistan

    Article • Pakistan Journal of Zoology, May 2017, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  119. Forensic applications of Y chromosomal properties

    Article • Legal Medicine, May 2017, Elsevier

    Muhammad Idrees

  120. Global expansion of chikungunya virus: mapping the 64-year history

    Article • International Journal of Infectious Diseases, May 2017, Elsevier

    Muhammad Idrees

  121. Advances in research on Zika virus

    Article • Asian Pacific Journal of Tropical Medicine, April 2017, Medknow

    Muhammad Idrees

  122. Causes of deafness in the Punjab region of Pakistan and the role of consanguinity

    Article • Public Health, April 2017, Elsevier

    Muhammad Idrees

  123. HCV-induced regulatory alterations of IL-1β, IL-6, TNF-α, and IFN-ϒ operative, leading liver en-route to non-alcoholic steatohepatitis

    Article • Inflammation Research, March 2017, Springer Science + Business Media

    Muhammad Idrees

  124. Study of inhibition of interferon inducible genes by dephosphorylation of E2 envelope gene of HCV genotype 1a

    Article • January 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Muhammad Idrees

  125. Aedes aegypti is the Major Vector for Transmission of Dengue Virus in Lahore, Pakistan

    Article • Pakistan Journal of Zoology, January 2017, Smith and Franklin Academic Publishing Corporation, Ltd, UK

    Muhammad Idrees

  126. A systematic review of treatment response rates in Pakistani hepatitis C virus patients; current prospects and future challenges

    Article • Medicine, December 2016, Wolters Kluwer Health

    Mr Muhammad Ovais , Muhammad Idrees

  127. Towards peptide vaccines against Zika virus: Immunoinformatics combined with molecular dynamics simulations to predict antigenic epitopes of Zika viral proteins

    Article • Scientific Reports, December 2016, Nature

    Mr Muhammad Usman Mirza, Muhammad Idrees

  128. Immunotherapeutic strategies for sexually transmitted viral infections: HIV, HSV and HPV

    Article • Cellular Immunology, December 2016, Elsevier

    Muhammad Idrees

  129. Influence of Hepatitis B Virus Genetic Heterogeneity on Treatment Response Against Lamivudine and Interferon in Pakistani Isolates

    Article • Anti-Infective Agents, September 2016, Bentham Science Publishers

    Professor Muhammad Idrees, Muhammad Idrees

  130. Circulating serotypes of dengue virus and their incursion into non-endemic areas of Pakistan; a serious threat

    Article • Virology Journal, August 2016, Springer Science + Business Media

    Habib Ahmad, Muhammad Idrees

  131. Detection of Anti-Hepatitis B Virus Drug Resistance Mutations Based on Multicolor Melting Curve Analysis

    Article • Journal of Clinical Microbiology, August 2016, ASM Journals

    qingge li, Muhammad Idrees

  132. Zika: As an emergent epidemic

    Article • Asian Pacific Journal of Tropical Medicine, August 2016, Medknow

    Muhammad Idrees

  133. Construction of Mammalian Expression Vector of Core Gene of HCV of Pakistani Isolate Genotype 1a

    Article • Journal of Human Virology & Retrovirology, April 2016, MedCrave Group LLC

    Muhammad Idrees

  134. Genetic distribution of 15 autosomal STR markers in the Punjabi population of Pakistan

    Article • International Journal of Legal Medicine, March 2016, Springer Science + Business Media

    Muhammad Idrees

  135. Parallel expression profiling of hepatic and serum microRNA-122 associated with clinical features and treatment responses in chronic hepatitis C patients

    Article • Scientific Reports, February 2016, Springer Science + Business Media

    Muhammad Idrees

  136. Complete genome sequencing and comparative analysis of three dengue virus type 2 Pakistani isolates

    Article • VirusDisease, January 2016, Springer Science + Business Media

    Muhammad Idrees

  137. Introduction and evolution of dengue virus type 2 in Pakistan: a phylogeographic analysis

    Article • Virology Journal, September 2015, Springer Science + Business Media

    Muhammad Idrees

  138. Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution

    Article • BMC Evolutionary Biology, August 2015, Springer Science + Business Media

    Muhammad Idrees

  139. Deep sequencing shows microRNA expression in hepatitis C patients is associated with the end treatment response

    Article • Journal of Clinical Virology, August 2015, Elsevier

    Muhammad Idrees

  140. Phylogenetic and 2D/3D Analysis of HCV 1a NS4A Gene/Protein in Pakistani Isolates

    Article • Hepatitis Monthly, June 2015, Kowsar Medical Institute

    Muhammad Idrees

  141. The genotype CC ofIL-28B SNP rs12979860 is significantly associated with a sustained virological response in chronic HCV-infected Pakistani patients

    Article • Journal of Digestive Diseases, May 2015, Wiley

    Professor Muhammad Idrees, Muhammad Idrees

  142. Expression of Hepatitis C Virus Core and E2 antigenic recombinant proteins and their use for development of diagnostic assays

    Article • International Journal of Infectious Diseases, May 2015, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  143. P0701 : Next generation sequencing reveals differential expression profiles of hepatic micrornas in chronic hepatitis C patients

    Article • Journal of Hepatology, April 2015, Elsevier

    Muhammad Idrees

  144. Computational Prediction and Analysis of Envelop Glycoprotein Epitopes of DENV-2 and DENV-3 Pakistani Isolates: A First Step towards Dengue Vaccine Development

    Article • PLOS One, March 2015, PLOS

    Professor Muhammad Idrees, Muhammad Idrees

  145. Evidence-based consensus on the diagnosis, prevention and management of hepatitis C virus disease

    Article • World Journal of Hepatology, January 2015, Baishideng Publishing Group Co., Limited (formerly WJG Press)

    Muhammad Idrees

  146. Genetic history of hepatitis C virus in Pakistan

    Article • Infection Genetics and Evolution, October 2014, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  147. Studies on the role of NS3 and NS5A non-structural genes of hepatitis C virus genotype 3a local isolates in apoptosis

    Article • International Journal of Infectious Diseases, August 2014, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  148. Prevalence and Molecular Determination of Hepatitis C Infection in Khyber Pakhtunkhwa, Pakistan

    Article • Archives of Clinical Infectious Diseases, July 2014, Kowsar Medical Institute

    Professor Muhammad Idrees, Muhammad Idrees

  149. Correlation of biochemical markers and HCV RNA titers with fibrosis stages and grades in chronic HCV-3a patients

    Article • European Journal of Gastroenterology & Hepatology, July 2014, Wolters Kluwer Health

    Professor Muhammad Idrees, Muhammad Idrees

  150. Hepatitis delta virus genotype-1 alone cocirculates with hepatitis B virus genotypes A and D in Pakistan

    Article • European Journal of Gastroenterology & Hepatology, March 2014, Wolters Kluwer Health

    Professor Muhammad Idrees, Muhammad Idrees

  151. Studies on the role of neutralizing antibodies against envelope genes in resolving HCV pseudo-particles infection

    Article • Molecular Biology Reports, February 2014, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  152. Generation of infectious HCV pseudo typed particles and its utilization for studying the role of CD81 & SRBI receptors in HCV infection

    Article • Molecular Biology Reports, February 2014, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  153. Emergence of genetically variant Hepatitis C virus population in response to increased antiviral drug pressure, Pakistan

    Article • Virus Genes, February 2014, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  154. Determination of hepatitis C virus genotypes circulating in different districts of Punjab (Pakistan)

    Article • European Journal of Gastroenterology & Hepatology, January 2014, Wolters Kluwer Health

    Professor Muhammad Idrees, Muhammad Idrees

  155. Inhibitory effect of kaolin minerals compound against hepatitis C virus in Huh-7 cell lines

    Article • BMC Research Notes, January 2014, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  156. De Novo modeling of Envelope 2 protein of HCV isolated from Pakistani patient and epitopes prediction for vaccine development

    Article • Journal of Translational Medicine, January 2014, Springer Science + Business Media

    Mr Mazhar Hussain, Mazhar Hussain, Muhammad Idrees

  157. Change in demographic pattern of dengue virus infection: evidence from 2011 dengue outbreak in Punjab, Pakistan

    Article • Public Health, September 2013, Elsevier

    Muhammad Idrees

  158. Tourism–growth nexus in Pakistan: Evidence from ARDL bounds tests

    Article • Economic Modelling, September 2013, Elsevier

    Muhammad Idrees

  159. Seroepidemiology of dengue fever in Khyber Pakhtunkhawa, Pakistan

    Article • International Journal of Infectious Diseases, July 2013, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  160. The first complete genome sequence of HCV-1a from Pakistan and a phylogenetic analysis with complete genomes from the rest of the world

    Article • Virology Journal, June 2013, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  161. Mutations in the NS5A gene are associated with response to interferon+ribavirin combination therapy in patients with chronic hepatitis C virus 3a infection

    Article • European Journal of Gastroenterology & Hepatology, April 2013, Wolters Kluwer Health

    Professor Muhammad Idrees, Muhammad Idrees

  162. Prevalence of HBV infection in suspected population of conflict-affected area of war against terrorism in North Waziristan FATA Pakistan

    Article • Infection Genetics and Evolution, December 2012, Elsevier

    Professor Muhammad Idrees, Habib Ahmad, Muhammad Idrees

  163. Computational identification of interplay between phosphorylation and O-β-glycosylation of human occludin as potential mechanism to impair hepatitis C virus entry

    Article • Infection Genetics and Evolution, August 2012, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  164. Hepatitis E virus-associated aplastic anaemia: The first case of its kind

    Article • Journal of Clinical Virology, May 2012, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  165. Computational Identification and Modeling of Crosstalk between Phosphorylation, O-β-glycosylation and Methylation of FoxO3 and Implications for Cancer Therapeutics

    Article • International Journal of Molecular Sciences, March 2012, MDPI AG

    Professor Muhammad Idrees, Muhammad Idrees

  166. Association of Hepatitis C Virus With Insulin Resistance: Evidences From Animal Studies and Clinical Studies

    Article • Hepatitis Monthly, January 2012, Kowsar Medical Institute

    Professor Muhammad Idrees, Muhammad Idrees

  167. Mycoplasma genitalium: A comparative genomics study of metabolic pathways for the identification of drug and vaccine targets

    Article • Infection Genetics and Evolution, January 2012, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  168. PCR could be a method of choice for identification of both pulmonary and extra-pulmonary tuberculosis

    Article • BMC Research Notes, September 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  169. High baseline interleukine-8 level is an Independent risk factor for the achievement of sustained virological response in chronic HCV patients

    Article • Infection Genetics and Evolution, August 2011, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  170. Mixed Genotype Infections with Hepatitis C Virus, Pakistan

    Article • Emerging Infectious Diseases, August 2011, Centers for Disease Control and Prevention (CDC)

    Muhammad Idrees

  171. An overview of Triple infection with Hepatitis B, C and D viruses

    Article • Virology Journal, July 2011, Springer Science + Business Media

    Muhammad Idrees

  172. Expression of core antigen of HCV genotype 3a and its evaluation as screening agent for HCV infection in Pakistan

    Article • Virology Journal, July 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  173. The prevalence of HBV infection in the cohort of IDPs of war against terrorism in Malakand Division of Northern Pakistan

    Article • BMC Infectious Diseases, June 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  174. Evaluation of three different hepatitis C virus typing methods for detection of mixed-genotype infections

    Article • Journal of Digestive Diseases, May 2011, Wiley

    Professor Muhammad Idrees, Muhammad Idrees

  175. Occult hepatitis C virus infection and associated predictive factors: The Pakistan experience

    Article • Infection Genetics and Evolution, March 2011, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  176. Envelope 2 protein phosphorylation sites S75 & 277 of hepatitis C virus genotype 1a and interferon resistance: A sequence alignment approach

    Article • Virology Journal, February 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  177. Promiscuous prediction and conservancy analysis of CTL binding epitopes of HCV 3a viral proteome from Punjab Pakistan: an In Silico Approach

    Article • Virology Journal, February 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  178. An overview of treatment response rates to various anti-viral drugs in Pakistani Hepatitis B Virus infected patients

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  179. Change in hepatitis C virus clades: A cross-sectional study of chronic HCV patients in Pakistan from 2000–2010

    Article • European Journal of Clinical Microbiology & Infectious Diseases, January 2011, Springer Science + Business Media

    Muhammad Idrees

  180. Isolation and characterization of two new hepatitis E virus genotype 1 strains from two mini-outbreaks in Lahore, Pakistan

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  181. Hepatitis G Virus associated aplastic anemia: A recent case from Pakistan

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  182. Oncogenic potential of Human Papillomavirus (HPV) and its relation with cervical cancer

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  183. True prevalence of twin HDV-HBV infection in Pakistan: a molecular approach

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  184. Positional effect of phosphorylation sites 266 and 267 in the cytoplasmic domain of the E2 protein of hepatitis C virus 3a genotype: Interferon Resistance analysis via Sequence Alignment

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  185. Hepatitis C virus genotypes circulating in district Swat of Khyber Pakhtoonkhaw, Pakistan

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Habib Ahmad, Muhammad Idrees

  186. Determination of HCV genotypes and viral loads in chronic HCV infected patients of Hazara Pakistan

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Habib Ahmad, Muhammad Idrees

  187. Hepatitis C virus genotype 3a with phylogenetically distinct origin is circulating in Pakistan

    Article • Genetic Vaccines and Therapy, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  188. Characterization of Hepatitis C Virus genotype 3a Hypervariable region 1 in patients achieved rapid virological response to alpha interferon and Ribavirin Combination therapy

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  189. Hepatitis B virus in Pakistan: A systematic review of prevalence, risk factors, awareness status and genotypes

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  190. Establishment of stable Huh-7 cell lines expressing various hepatitis C virus genotype 3a protein: an in-vitro testing system for novel anti-HCV drugs

    Article • Genetic Vaccines and Therapy, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  191. Effects of Host and virus related factors on Interferon-α+ribavirin and Pegylated-interferon+ribavirin treatment outcomes in Chronic Hepatitis C patients

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  192. Hepatitis Associated Aplastic Anemia: A review

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  193. Serotype and genotype analysis of dengue virus by sequencing followed by phylogenetic analysis using samples from three mini outbreaks-2007-2009 in Pakistan

    Article • BMC Microbiology, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  194. Response to combination therapy of HCV 3a infected Pakistani patients and the role of NS5A protein

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  195. Identification of ionotrophic purinergic receptors in Huh-7 cells and their response towards structural proteins of HCV genotype 3a

    Article • Virology Journal, January 2011, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  196. Pattern and molecular epidemiology of Hepatitis B virus genotypes circulating in Pakistan

    Article • Infection Genetics and Evolution, December 2010, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  197. The changing epidemiology pattern and frequency distribution of hepatitis C virus in Pakistan

    Article • Infection Genetics and Evolution, July 2010, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  198. Simultaneous Amplification of Two Bacterial Genes: More Reliable Method of Helicobacter pylori Detection in Microbial Rich Dental Plaque Samples

    Article • Current Microbiology, May 2010, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  199. Prevalence of active hepatitis c virus infection in district mansehra pakistan

    Article • Virology Journal, January 2010, Springer Science + Business Media

    Professor Muhammad Idrees, Habib Ahmad, Muhammad Idrees

  200. Molecular epidemiology of Hepatitis C virus genotypes in Khyber Pakhtoonkhaw of Pakistan

    Article • Virology Journal, January 2010, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  201. Prevalence of hepatitis delta virus infection among hepatitis b virus surface antigen positive patients circulating in the largest province of pakistan

    Article • Virology Journal, January 2010, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  202. Mutations in the E2-PePHD region of hepatitis C virus genotype-3a and correlation with response to interferon and ribavirin combination therapy in Pakistani patients

    Article • Virology Journal, January 2010, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  203. Hepatitis C Treatment: current and future perspectives

    Article • Virology Journal, January 2010, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  204. Avian influenza A (H9N2): computational molecular analysis and phylogenetic characterization of viral surface proteins isolated between 1997 and 2009 from the human population

    Article • Virology Journal, January 2010, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  205. Nucleotide identity and variability among different Pakistani hepatitis C virus isolates

    Article • Virology Journal, August 2009, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  206. A study of best positive predictors for sustained virologic response to interferon alpha plus ribavirin therapy in naive chronic hepatitis C patients

    Article • BMC Gastroenterology, January 2009, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  207. Hepatitis C virus genotype 3a infection and hepatocellular carcinoma: Pakistan experience

    Article • World Journal of Gastroenterology, January 2009, Baishideng Publishing Group Co., Limited (formerly WJG Press)

    Professor Muhammad Idrees, Muhammad Idrees

  208. Development of an improved genotyping assay for the detection of hepatitis C virus genotypes and subtypes in Pakistan

    Article • Journal of Virological Methods, June 2008, Elsevier

    Professor Muhammad Idrees, Muhammad Idrees

  209. Frequency distribution of hepatitis C virus genotypes in different geographical regions of Pakistan and their possible routes of transmission

    Article • BMC Infectious Diseases, May 2008, Springer Science + Business Media

    Professor Muhammad Idrees, Muhammad Idrees

  210. High prevalence of hepatitis C virus infection in the largest province of Pakistan

    Article • Journal of Digestive Diseases, May 2008, Wiley

    Professor Muhammad Idrees, Muhammad Idrees