All Stories

  1. 3D Dubins Paths for Underwater Vehicles

    Article • September 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  2. A General Framework for Remote Command and Control of Robots in Space

    Article • January 2023, American Institute of Aeronautics and Astronautics (AIAA)

    Dr Mark Moll

  3. HyperPlan: A Framework for Motion Planning Algorithm Selection and Parameter Optimization

    Article • September 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  4. HLA-Arena: A Customizable Environment for the Structural Modeling and Analysis of Peptide-HLA Complexes for Cancer Immunotherapy

    Article • JCO Clinical Cancer Informatics, November 2020, American Society of Clinical Oncology (ASCO)

    Dr Mark Moll

  5. Informing Multi-Modal Planning with Synergistic Discrete Leads

    Article • May 2020, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  6. Increasing Robot Autonomy via Motion Planning and an Augmented Reality Interface

    Article • IEEE Robotics and Automation Letters, April 2020, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  7. Improving the organization and interactivity of metabolic pathfinding with precomputed pathways

    Article • BMC Bioinformatics, January 2020, Springer Science + Business Media

    Dr Mark Moll

  8. A General Algorithm for Time-Optimal Trajectory Generation Subject to Minimum and Maximum Constraints

    Article • January 2020, Springer Science + Business Media

    Dr Mark Moll

  9. A scalable motion planner for high-dimensional kinematic systems

    Article • The International Journal of Robotics Research, December 2019, SAGE Publications

    Professor Lydia E Kavraki, Dr Mark Moll

  10. Decoupling Constraints from Sampling-Based Planners

    Article • November 2019, Springer Science + Business Media

    Dr Mark Moll

  11. Using parallelized incremental meta-docking can solve the conformational sampling issue when docking large ligands to proteins

    Article • BMC Molecular and Cell Biology, September 2019, Springer Science + Business Media

    Professor Lydia E Kavraki, Dr Mark Moll

  12. Exploring implicit spaces for constrained sampling-based planning

    Article • The International Journal of Robotics Research, August 2019, SAGE Publications

    Professor Lydia E Kavraki, Dr Mark Moll

  13. Online Multilayered Motion Planning with Dynamic Constraints for Autonomous Underwater Vehicles

    Article • May 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  14. Lazy Evaluation of Goal Specifications Guided by Motion Planning

    Article • May 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  15. Machine Learning Guided Atom Mapping of Metabolic Reactions

    Article • Journal of Chemical Information and Modeling, December 2018, American Chemical Society (ACS)

    Dr Mark Moll, Professor Lydia E Kavraki

  16. Online motion planning for unexplored underwater environments using autonomous underwater vehicles

    Article • Journal of Field Robotics, November 2018, Wiley

    Dr Mark Moll

  17. Sampling-Based Methods for Motion Planning with Constraints

    Article • Annual Review of Control Robotics and Autonomous Systems, May 2018, Annual Reviews

    Dr Mark Moll

  18. Randomized Physics-Based Motion Planning for Grasping in Cluttered and Uncertain Environments

    Article • IEEE Robotics and Automation Letters, April 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  19. General Prediction of Peptide-MHC Binding Modes Using Incremental Docking: A Proof of Concept

    Article • Scientific Reports, March 2018, Nature

    Dr Mark Moll

  20. Maintaining and Enhancing Diversity of Sampled Protein Conformations in Robotics-Inspired Methods

    Article • Journal of Computational Biology, January 2018, Mary Ann Liebert Inc

    Dr Mark Moll, Professor Lydia E Kavraki

  21. Native state of complement protein C3d analysed via hydrogen exchange and conformational sampling

    Article • International Journal of Computational Biology and Drug Design, January 2018, Inderscience Publishers

    Dr Mark Moll

  22. DINC 2.0: A New Protein–Peptide Docking Webserver Using an Incremental Approach

    Article • Cancer Research, October 2017, American Association for Cancer Research (AACR)

    Dr Mark Moll, Professor Lydia E Kavraki

  23. A review of parameters and heuristics for guiding metabolic pathfinding

    Article • Journal of Cheminformatics, September 2017, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  24. Coarse-Grained Conformational Sampling of Protein Structure Improves the Fit to Experimental Hydrogen-Exchange Data

    Article • Frontiers in Molecular Biosciences, March 2017, Frontiers

    Dr Mark Moll, Professor Lydia E Kavraki

  25. Robonaut 2 and you: Specifying and executing complex operations

    Article • March 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  26. Defining Low-Dimensional Projections to Guide Protein Conformational Sampling

    Article • Journal of Computational Biology, January 2017, Mary Ann Liebert Inc

    Dr Mark Moll, Professor Lydia E Kavraki

  27. Planning feasible and safe paths online for autonomous underwater vehicles in unknown environments

    Article • October 2016, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  28. Structure-guided selection of specificity determining positions in the human Kinome

    Article • BMC Genomics, August 2016, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  29. Special Issue on the 2014 Robotics Science & Systems Conference

    Article • The International Journal of Robotics Research, January 2016, SAGE Publications

    Dr Mark Moll, Professor Lydia E Kavraki

  30. Improving protein conformational sampling by using guiding projections

    Article • November 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  31. Structure-guided selection of Specificity Determining Positions in the human kinome

    Article • November 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Lydia E Kavraki, Dr Mark Moll

  32. Benchmarking Motion Planning Algorithms: An Extensible Infrastructure for Analysis and Visualization

    Article • IEEE Robotics & Automation Magazine, September 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  33. Extending the Applicability of POMDP Solutions to Robotic Tasks

    Article • IEEE Transactions on Robotics, August 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  34. A heuristic approach to finding diverse short paths

    Article • May 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  35. Experience-based planning with sparse roadmap spanners

    Article • May 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  36. Asymptotically Optimal Stochastic Motion Planning with Temporal Goals

    Article • January 2015, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  37. Active Planning, Sensing, and Recognition Using a Resource-Constrained Discriminant POMDP

    Article • June 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  38. Fast stochastic motion planning with optimality guarantees using local policy reconfiguration

    Article • May 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  39. SMT-based synthesis of integrated task and motion plans from plan outlines

    Article • May 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  40. Software for project-based learning of robot motion planning

    Article • Computer Science Education, December 2013, Taylor & Francis

    Dr Mark Moll, Professor Lydia E Kavraki

  41. SIMS: A Hybrid Method for Rapid Conformational Analysis

    Article • PLOS One, July 2013, PLOS

    Dr Mark Moll, Professor Lydia E Kavraki

  42. Combinatorial Clustering of Residue Position Subsets Predicts Inhibitor Affinity across the Human Kinome

    Article • PLoS Computational Biology, June 2013, PLOS

    Dr Mark Moll, Professor Lydia E Kavraki

  43. Anytime solution optimization for sampling-based motion planning

    Article • May 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  44. Automated model approximation for robotic navigation with POMDPs

    Article • May 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  45. Resolution Independent Density Estimation for motion planning in high-dimensional spaces

    Article • May 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  46. The Open Motion Planning Library

    Article • IEEE Robotics & Automation Magazine, December 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  47. Multi-objective sensor-based replanning for a car-like robot

    Article • November 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  48. Multi-robot target verification with reachability constraints

    Article • November 2012, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  49. On the conformational flexibility of C3b: A molecular insight into activation and transformation of a major complement effector

    Article • Immunobiology, November 2012, Elsevier

    Dr Mark Moll

  50. Safe distributed motion coordination for second-order systems with different planning cycles

    Article • The International Journal of Robotics Research, February 2012, SAGE Publications

    Dr Mark Moll, Professor Lydia E Kavraki

  51. Teaching motion planning concepts to undergraduate students

    Article • October 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  52. The LabelHash Server and Tools for substructure-based functional annotation

    Article • Bioinformatics, June 2011, Oxford University Press (OUP)

    Dr Mark Moll, Professor Lydia E Kavraki

  53. Analysis of substructural variation in families of enzymatic proteins with applications to protein function prediction

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  54. The LabelHash algorithm for substructure matching

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  55. Tracing conformational changes in proteins

    Article • BMC Structural Biology, January 2010, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  56. Tracing conformational changes in proteins

    Article • November 2009, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  57. A statistical model to correct systematic bias introduced by algorithmic thresholds in protein structural comparison algorithms

    Article • November 2008, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  58. LabelHash: A Flexible and Extensible Method for Matching Structural Motifs

    Article • Nature Reports Climate Change, August 2008, Nature

    Dr Mark Moll

  59. LabelHash: A Flexible and Extensible Method for Matching Structural Motifs

    Article • Nature Reports Climate Change, August 2008, Nature

    Dr Mark Moll

  60. MATCHING OF STRUCTURAL MOTIFS USING HASHING ON RESIDUE LABELS AND GEOMETRIC FILTERING FOR PROTEIN FUNCTION PREDICTION

    Article • August 2008, World Scientific Pub Co Pte Lt

    Dr Mark Moll

  61. Editorial

    Article • The International Journal of Robotics Research, March 2008, SAGE Publications

    Dr Mark Moll

  62. Roadmap Methods for Protein Folding

    Article • January 2008, Springer Science + Business Media

    Dr Mark Moll, Professor Lydia E Kavraki

  63. Multifunctional behaviors of reconfigurable superbot robots

    Article • October 2007, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  64. Modular Self-Reconfigurable Robot Systems [Grand Challenges of Robotics]

    Article • IEEE Robotics & Automation Magazine, March 2007, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  65. Improving the Prediction of Kinase Binding Affinity Using Homology Models

    Article • January 2007, ACM (Association for Computing Machinery)

    Dr Mark Moll, Professor Lydia E Kavraki

  66. Distributed Control of the Center of Mass of a Modular Robot

    Article • October 2006, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  67. SUPERBOT: A Deployable, Multi-Functional, and Modular Self-Reconfigurable Robotic System

    Article • October 2006, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  68. Modular, Multifunctional and Reconfigurable SuperBot for Space Applications

    Article • September 2006, American Institute of Aeronautics and Astronautics (AIAA)

    Dr Mark Moll

  69. Path planning for deformable linear objects

    Article • IEEE Transactions on Robotics, August 2006, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  70. Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction

    Article • Proceedings of the National Academy of Sciences, June 2006, Proceedings of the National Academy of Sciences

    Dr Mark Moll, Professor Lydia E Kavraki

  71. Path Planning for Variable Resolution Minimal-Energy Curves of Constant Length

    Article • January 2005, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll, Professor Lydia E Kavraki

  72. Path planning for minimal energy curves of constant length

    Article • January 2004, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  73. Reconstructing the Shape and Motion of Unknown Objects with Active Tactile Sensors

    Article • January 2004, Springer Science + Business Media

    Dr Mark Moll

  74. Algorithmic Foundations of Robotics V

    Article • January 2004, Springer Science + Business Media

    Dr Mark Moll

  75. Aligning parts for micro assemblies

    Article • Assembly Automation, March 2002, Emerald

    Dr Mark Moll

  76. Manipulation of Pose Distributions

    Article • The International Journal of Robotics Research, March 2002, SAGE Publications

    Dr Mark Moll

  77. Dynamic shape reconstruction using tactile sensors

    Article • January 2002, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  78. Orienting micro-scale parts with squeeze and roll primitives

    Article • January 2002, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  79. Reconstructing shape from motion using tactile sensors

    Article • January 2001, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  80. Uncertainty reduction using dynamics

    Article • January 2000, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  81. Convergence-Zone Episodic Memory: Analysis and Simulations

    Article • Neural Networks, August 1997, Elsevier

    Dr Mark Moll

  82. The capacity of convergence-zone episodic memory

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Dr Mark Moll

  83. Roadmap Methods for Protein Folding

    Article • Springer Science + Business Media

    Dr Mark Moll