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  1. Genomic surveillance of SARS-CoV-2 in US military compounds in Afghanistan reveals multiple introductions and outbreaks of Alpha and Delta variants

    Article • BMC Genomics, July 2022, Springer Science + Business Media

    Dr Marcus C Chibucos

  2. Investigation of an outbreak of COVID-19 among U.S. military personnel and beneficiaries stationed in the Republic of Korea, June-July 2021

    Article • PLOS Global Public Health, May 2022, PLOS

    Dr Marcus C Chibucos

  3. ECO: the Evidence and Conclusion Ontology, an update for 2022

    Article • Nucleic Acids Research, November 2021, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  4. Standardization of assay representation in the Ontology for Biomedical Investigations

    Article • Database, January 2021, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  5. The Gene Ontology resource: enriching a GOld mine

    Article • Nucleic Acids Research, December 2020, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  6. Signature of adaptive evolution in olfactory receptor genes in Cory’s Shearwater supports molecular basis for smell in procellariiform seabirds

    Article • Scientific Reports, January 2020, Springer Science + Business Media

    Dr Marcus C Chibucos

  7. Phenotype annotation with the ontology of microbial phenotypes (OMP)

    Article • Journal of Biomedical Semantics, July 2019, Springer Science + Business Media

    Dr Marcus C Chibucos

  8. Annotation of gene product function from high-throughput studies using the Gene Ontology

    Article • Database, January 2019, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  9. ECO, the Evidence & Conclusion Ontology: community standard for evidence information

    Article • Nucleic Acids Research, November 2018, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  10. The Gene Ontology Resource: 20 years and still GOing strong

    Article • Nucleic Acids Research, November 2018, Oxford University Press (OUP)

    Dr Marcus C Chibucos, Dr Niko Hyka

  11. Vaginal Candida spp. genomes from women with vulvovaginal candidiasis

    Article • Pathogens and Disease, June 2017, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  12. Expansion of the Gene Ontology knowledgebase and resources

    Article • Nucleic Acids Research, November 2016, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  13. The Evidence and Conclusion Ontology (ECO): Supporting GO Annotations

    Article • November 2016, Springer Science + Business Media

    Dr Marcus C Chibucos

  14. Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions

    Article • Scientific Reports, October 2016, Nature

    Dr Marcus C Chibucos

  15. Annotated draft genome sequences of three species ofCryptosporidium:Cryptosporidium meleagridisisolate UKMEL1,C. baileyiisolate TAMU-09Q1 andC. hominisisolates TU502_2012 and UKH1

    Article • Pathogens and Disease, August 2016, Oxford University Press (OUP)

    Dr Marcus C Chibucos, Professor Jessica C Kissinger

  16. An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

    Article • Nature Communications, July 2016, Nature

    Dr Marcus C Chibucos

  17. The Ontology for Biomedical Investigations

    Article • PLOS One, April 2016, PLOS

    Dr Marcus C Chibucos, Anita E Bandrowski

  18. From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF

    Article • Database, January 2016, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  19. Implementation of a Pan-Genomic Approach to Investigate Holobiont-Infecting Microbe Interaction: A Case Report of a Leukemic Patient with Invasive Mucormycosis

    Article • PLOS One, November 2015, PLOS

    Dr Marcus C Chibucos

  20. The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

    Article • Database, May 2015, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  21. The genome sequence of four isolates from the family Lichtheimiaceae

    Article • Pathogens and Disease, April 2015, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  22. An ontology for microbial phenotypes

    Article • BMC Microbiology, November 2014, Springer Science + Business Media

    Dr Marcus C Chibucos, Dr. Peter Uetz

  23. Gene Ontology Consortium: going forward

    Article • Nucleic Acids Research, November 2014, Oxford University Press (OUP)

    Dr Marcus C Chibucos, Professor Jurg Bahler

  24. Standardized description of scientific evidence using the Evidence Ontology (ECO)

    Article • Database, July 2014, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  25. Draft Genome Sequence of Mortierella alpina Isolate CDC-B6842

    Article • Genome Announcements, January 2014, ASM Journals

    Dr Marcus C Chibucos

  26. Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys

    Article • BMC Genomics, January 2014, Springer Science + Business Media

    Dr Marcus C Chibucos

  27. Single molecule sequencing and genome assembly of a clinical specimen of Loa loa, the causative agent of loiasis

    Article • BMC Genomics, January 2014, Springer Science + Business Media

    Dr Marcus C Chibucos

  28. Draft Genome Sequences of Human Pathogenic Fungus Geomyces pannorum Sensu Lato and Bat White Nose Syndrome Pathogen Geomyces (Pseudogymnoascus) destructans

    Article • Genome Announcements, December 2013, ASM Journals

    Dr Marcus C Chibucos

  29. Simultaneous Transcriptional Profiling of Bacteria and Their Host Cells

    Article • PLOS One, December 2013, PLOS

    Dr Marcus C Chibucos

  30. Gene Ontology Annotations and Resources

    Article • Nucleic Acids Research, November 2012, Oxford University Press (OUP)

    Dr Marcus C Chibucos, Professor Jurg Bahler

  31. Kinetic and phylogenetic analysis of plant polyamine uptake transporters

    Article • Planta, June 2012, Springer Science + Business Media

    Dr Marcus C Chibucos

  32. Draft Genome Sequences of the Diarrheagenic Escherichia coli Collection

    Article • Journal of Bacteriology, May 2012, ASM Journals

    Dr Marcus C Chibucos, Dr Shannon Manning

  33. The Gene Ontology: enhancements for 2011

    Article • Nucleic Acids Research, November 2011, Oxford University Press (OUP)

    Dr Marcus C Chibucos, Professor Jurg Bahler, Chris Mungall

  34. The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

    Article • Nucleic Acids Research, November 2011, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  35. Signatures of Adaptation to Obligate Biotrophy in the Hyaloperonospora arabidopsidis Genome

    Article • Science, December 2010, American Association for the Advancement of Science

    Dr Marcus C Chibucos, Dr David J Studholme

  36. Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology

    Article • Microbiology and Molecular Biology Reviews, December 2010, ASM Journals

    Dr Marcus C Chibucos

  37. The Gene Ontology in 2010: extensions and refinements

    Article • Nucleic Acids Research, November 2009, Oxford University Press (OUP)

    Dr Marcus C Chibucos, Chris Mungall

  38. The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

    Article • Nucleic Acids Research, September 2009, Oxford University Press (OUP)

    Dr Marcus C Chibucos

  39. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

    Article • Nature, September 2009, Springer Science + Business Media

    Dr Marcus C Chibucos, Benjamin Schwessinger, Dr David J Studholme, Dr Sebastian Schornack, Niklaus J Grunwald, Lucio Conti

  40. Development of an Ontology of Microbial Phenotypes (OMP)

    Article • Nature Photonics, August 2009, Springer Science + Business Media

    Dr Marcus C Chibucos

  41. Development of an Ontology of Microbial Phenotypes (OMP)

    Article • Nature Reports Climate Change, August 2009, Springer Science + Business Media

    Dr Marcus C Chibucos

  42. Describing commonalities in microbial effector delivery using the Gene Ontology

    Article • Trends in Microbiology, July 2009, Elsevier

    Dr Marcus C Chibucos

  43. Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms

    Article • BMC Microbiology, February 2009, Springer Science + Business Media

    Dr Marcus C Chibucos

  44. Programmed cell death in host-symbiont associations, viewed through the Gene Ontology

    Article • BMC Microbiology, February 2009, Springer Science + Business Media

    Dr Marcus C Chibucos

  45. Common themes in nutrient acquisition by plant symbiotic microbes, described by the Gene Ontology

    Article • BMC Microbiology, January 2009, Springer Science + Business Media

    Dr Marcus C Chibucos

  46. Expressed Sequence Tags from Phytophthora sojae Reveal Genes Specific to Development and Infection

    Article • Molecular Plant-Microbe Interactions, July 2007, Scientific Societies

    Dr Marcus C Chibucos

  47. Levels of Polyamines and Kinetic Characterization of Their Uptake in the Soybean Pathogen Phytophthora sojae

    Article • Applied and Environmental Microbiology, May 2006, ASM Journals

    Dr Marcus C Chibucos