All Stories

  1. Whole-Genome Sequencing of Shiga Toxin-Producing Escherichia coli for Characterization and Outbreak Investigation

    Article • Microorganisms, May 2023, MDPI AG

    Dr Shannon Manning

  2. Nitric Oxide Induced stx2 Expression Is Inhibited by the Nitric Oxide Reductase, NorV, in a Clade 8 Escherichia coli O157:H7 Outbreak Strain

    Article • Microorganisms, January 2022, MDPI AG

    Dr Shannon Manning

  3. Characterizing the Cattle Gut Microbiome in Farms with a High and Low Prevalence of Shiga Toxin Producing Escherichia coli

    Article • Microorganisms, August 2021, MDPI AG

    Dr Shannon Manning

  4. Variability in the Occupancy of Escherichia coli O157 Integration Sites by Shiga Toxin-Encoding Prophages

    Article • Toxins, June 2021, MDPI AG

    Dr Shannon Manning

  5. Analysis of virulence phenotypes and antibiotic resistance in clinical strains of Acinetobacter baumannii isolated in Nashville, Tennessee

    Article • BMC Microbiology, January 2021, Springer Science + Business Media

    Dr Shannon Manning

  6. Vitamin D and Streptococci: The Interface of Nutrition, Host Immune Response, and Antimicrobial Activity in Response to Infection

    Article • ACS Infectious Diseases, November 2020, American Chemical Society (ACS)

    Dr Shannon Manning

  7. The impact of Lactobacillus on group B streptococcal interactions with cells of the extraplacental membranes

    Article • Microbial Pathogenesis, November 2020, Elsevier

    Dr Shannon Manning

  8. Genetic and Phenotypic Factors Associated with Persistent Shedding of Shiga Toxin-Producing Escherichia coli by Beef Cattle

    Article • Applied and Environmental Microbiology, October 2020, ASM Journals

    Dr Shannon Manning

  9. Lactobacillus strains vary in their ability to interact with human endometrial stromal cells

    Article • PLoS ONE, September 2020, PLOS

    Dr Shannon Manning

  10. Effects of a high fat diet on gut microbiome dysbiosis in a mouse model of Gulf War Illness

    Article • Scientific Reports, June 2020, Springer Science + Business Media

    Dr Shannon Manning

  11. A Solution to Antifolate Resistance in Group B Streptococcus : Untargeted Metabolomics Identifies Human Milk Oligosaccharide-Induced Perturbations That Result in Potentiation of Trimethoprim

    Article • mBio, April 2020, ASM Journals

    Dr Shannon Manning

  12. Lactoferrin: A Critical Mediator of Both Host Immune Response and Antimicrobial Activity in Response to Streptococcal Infections

    Article • ACS Infectious Diseases, April 2020, American Chemical Society (ACS)

    Dr Shannon Manning

  13. Genetic Diversity of Non-O157 Shiga Toxin-Producing Escherichia coli Recovered From Patients in Michigan and Connecticut

    Article • Frontiers in Microbiology, March 2020, Frontiers

    Dr Shannon Manning

  14. Modulation of Death and Inflammatory Signaling in Decidual Stromal Cells following Exposure to Group B Streptococcus

    Article • Infection and Immunity, December 2019, ASM Journals

    Dr Shannon Manning

  15. Increasing Frequencies of Antibiotic Resistant Non-typhoidal Salmonella Infections in Michigan and Risk Factors for Disease

    Article • Frontiers in Medicine, November 2019, Frontiers

    Dr Shannon Manning

  16. Genetically distinct Group B Streptococcus strains induce varying macrophage cytokine responses

    Article • PLoS ONE, September 2019, PLOS

    Dr Shannon Manning

  17. Population Gene Introgression and High Genome Plasticity for the Zoonotic Pathogen Streptococcus agalactiae

    Article • Molecular Biology and Evolution, July 2019, Oxford University Press (OUP)

    Dr Shannon Manning

  18. Raman microspectroscopy differentiates perinatal pathogens on ex vivo infected human fetal membrane tissues

    Article • Journal of Biophotonics, June 2019, Wiley

    Dr Shannon Manning

  19. Protein kinase D mediates inflammatory responses of human placental macrophages to Group B Streptococcus

    Article • American Journal of Reproductive Immunology, January 2019, Wiley

    Dr Shannon Manning

  20. Investigation of the Role That NADH Peroxidase Plays in Oxidative Stress Survival in Group B Streptococcus

    Article • Frontiers in Microbiology, November 2018, Frontiers

    Dr Shannon Manning

  21. 2011. Identification of Streptococcus agalactiae on Human Fetal Membrane Tissues Using Raman Microspectroscopy

    Article • Open Forum Infectious Diseases, November 2018, Oxford University Press (OUP)

    Dr Shannon Manning

  22. Variation in Macrophage Phagocytosis of Streptococcus agalactiae Does Not Reflect Bacterial Capsular Serotype, Multilocus Sequence Type or Association with Invasive Infection

    Article • Pathogens and Immunity, May 2018, Case Western Reserve University

    Dr Shannon Manning

  23. Prevalence and characteristics of Shiga toxin-producing Escherichia coli in finishing pigs: Implications on public health

    Article • International Journal of Food Microbiology, January 2018, Elsevier

    Dr Shannon Manning

  24. A Nonhemolytic Group B Streptococcus Strain Exhibits Hypervirulence

    Article • The Journal of Infectious Diseases, December 2017, Oxford University Press (OUP)

    Dr Shannon Manning

  25. Genome Sequences of 34 Shiga Toxin-Producing Escherichia coli Isolates from Swine and Other Sources

    Article • Genome Announcements, November 2017, ASM Journals

    Pina Fratamico, Dr Shannon Manning

  26. Group B streptococcal colonization and transmission dynamics in pregnant women and their newborns in Nigeria: implications for prevention strategies

    Article • Clinical Microbiology and Infection, September 2017, Elsevier

    Dr Shannon Manning

  27. Antimicrobial Drug–Resistant Shiga Toxin–Producing Escherichia coli Infections, Michigan, USA

    Article • Emerging Infectious Diseases, September 2017, Centers for Disease Control and Prevention (CDC)

    Dr Shannon Manning

  28. Intrinsic Maturational Neonatal Immune Deficiencies and Susceptibility to Group B Streptococcus Infection

    Article • Clinical Microbiology Reviews, August 2017, ASM Journals

    Dele Davies, Michelle Korir, Dr Shannon Manning

  29. Comparing the Genetic Diversity and Antimicrobial Resistance Profiles of Campylobacter jejuni Recovered from Cattle and Humans

    Article • Frontiers in Microbiology, May 2017, Frontiers

    Dr Shannon Manning

  30. Intestinal Microbial Community Dynamics of White-Tailed Deer (Odocoileus virginianus) in an Agroecosystem

    Article • Microbial Ecology, March 2017, Springer Science + Business Media

    Dr Shannon Manning

  31. Group B Streptococcus Induces Neutrophil Recruitment to Gestational Tissues and Elaboration of Extracellular Traps and Nutritional Immunity

    Article • Frontiers in Cellular and Infection Microbiology, February 2017, Frontiers

    Dr Shannon Manning

  32. Contribution of the RgfD Quorum Sensing Peptide to rgf Regulation and Host Cell Association in Group B Streptococcus

    Article • Genes, January 2017, MDPI AG

    Dr Shannon Manning

  33. Bovine Leukemia Virus and Mycobacterium avium subsp. paratuberculosis Are Not Associated with Shiga Toxin–Producing Escherichia coli Shedding in Cattle

    Article • Journal of Food Protection, January 2017, International Association for Food Protection

    Dr Shannon Manning

  34. Genetic Variation in Shiga Toxin-producing Escherichia coli Recovered from Patients in Michigan and Connecticut

    Article • Open Forum Infectious Diseases, January 2017, Oxford University Press (OUP)

    Dr Shannon Manning

  35. High prevalence of clade 8 Escherichia coli O157:H7 isolated from retail meat and butcher shop environment

    Article • Infection Genetics and Evolution, November 2016, Elsevier

    Dr Shannon Manning

  36. Differing mechanisms of surviving phagosomal stress among group B Streptococcus strains of varying genotypes

    Article • Virulence, October 2016, Taylor & Francis

    Michelle Korir, Dr Shannon Manning

  37. Factors associated with increasing campylobacteriosis incidence in Michigan, 2004–2013

    Article • Epidemiology and Infection, August 2016, Cambridge University Press

    Dr Shannon Manning

  38. Factors Associated with Shiga Toxin-Producing Escherichia coli Shedding by Dairy and Beef Cattle

    Article • Applied and Environmental Microbiology, June 2016, ASM Journals

    Dr Shannon Manning

  39. Association between genotypic diversity and biofilm production in group B Streptococcus

    Article • BMC Microbiology, May 2016, Springer Science + Business Media

    Dr Shannon Manning

  40. Impact of age and sex on the composition and abundance of the intestinal microbiota in individuals with and without enteric infections

    Article • Annals of Epidemiology, May 2016, Elsevier

    Dr Shannon Manning

  41. Antimicrobial Susceptibility Profiles of Human Campylobacter jejuni Isolates and Association with Phylogenetic Lineages

    Article • Frontiers in Microbiology, April 2016, Frontiers

    Dr Shannon Manning

  42. Genomic Analysis ofSalmonella entericaSerovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness under Nitrosative and Oxidative Stress

    Article • mBio, March 2016, ASM Journals

    Dr Samuel Irving Miller, Dr Shannon Manning

  43. Draft Genome Sequence of an Invasive Streptococcus agalactiae Isolate Lacking Pigmentation

    Article • Genome Announcements, February 2016, ASM Journals

    Dr Shannon Manning

  44. Increasing incidence of non-O157 Shiga toxin-producing Escherichia coli (STEC) in Michigan and association with clinical illness

    Article • Epidemiology and Infection, November 2015, Cambridge University Press

    Dr Shannon Manning

  45. Draft Genome Sequence of a DiarrheagenicMorganella morganiiIsolate

    Article • Genome Announcements, October 2015, ASM Journals

    Dr Shannon Manning

  46. Intestinal microbial communities associated with acute enteric infections and disease recovery

    Article • Microbiome, September 2015, Springer Science + Business Media

    Dr Shannon Manning

  47. Effect of feeding a direct-fed microbial on total and antimicrobial-resistant fecal coliform counts in preweaned dairy calves

    Article • American Journal of Veterinary Research, September 2015, American Veterinary Medical Association (AVMA)

    Dr Shannon Manning

  48. Within-Farm Changes in Dairy Farm-Associated Salmonella Subtypes and Comparison to Human Clinical Isolates in Michigan, 2000-2001 and 2009

    Article • Applied and Environmental Microbiology, June 2015, ASM Journals

    Dr Shannon Manning

  49. Clade 8 and Clade 6 Strains of Escherichia coli O157:H7 from Cattle in Argentina have Hypervirulent-Like Phenotypes

    Article • PLoS ONE, June 2015, PLOS

    Dr Shannon Manning

  50. Characterization of enteropathogenic and Shiga toxin-producing Escherichia coli in cattle and deer in a shared agroecosystem

    Article • Frontiers in Cellular and Infection Microbiology, April 2015, Frontiers

    Dr Shannon Manning

  51. Corrigendum to “Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems” [Int. J. Food Microbiol. 187 (2014) 57–72]

    Article • International Journal of Food Microbiology, January 2015, Elsevier

    A/Prof Scott A Beatson, Dr Shannon Manning

  52. Emergence of a hypervirulent neonatal pathogen

    Article • The Lancet Infectious Diseases, November 2014, Elsevier

    Dr Shannon Manning

  53. Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems

    Article • International Journal of Food Microbiology, September 2014, Elsevier

    Dr Shannon Manning, A/Prof Scott A Beatson

  54. Molecular Characterization of Shiga Toxin‐Producing Escherichia coli

    Article • August 2014, Wiley

    Dr Shannon Manning

  55. Association and Virulence Gene Expression Vary among Serotype III Group B Streptococcus Isolates following Exposure to Decidual and Lung Epithelial Cells

    Article • Infection and Immunity, August 2014, ASM Journals

    Dr Shannon Manning, Michelle Korir

  56. Diverse Virulence Gene Content of Shiga Toxin-Producing Escherichia coli from Finishing Swine

    Article • Applied and Environmental Microbiology, August 2014, ASM Journals

    Dr Shannon Manning

  57. Pilus distribution among lineages of group b streptococcus: an evolutionary and clinical perspective

    Article • BMC Microbiology, June 2014, Springer Science + Business Media

    Dr Shannon Manning

  58. Molecular Evolution of Enterohemorrhagic Escherichia coli and Application to Epidemiology

    Article • April 2014, ASM Journals

    Dr Shannon Manning, Dr Teresa M Bergholz

  59. Sepsis From the Gut: The Enteric Habitat of Bacteria That Cause Late-Onset Neonatal Bloodstream Infections

    Article • Clinical Infectious Diseases, March 2014, Oxford University Press (OUP)

    Dr Shannon Manning

  60. Whole Genome Sequencing of Mycobacterium tuberculosis Reveals Slow Growth and Low Mutation Rates during Latent Infections in Humans

    Article • PLoS ONE, March 2014, PLOS

    Dr Shannon Manning

  61. Shiga toxin-producingEscherichia coliin swine: the public health perspective

    Article • Animal Health Research Reviews, January 2014, Cambridge University Press

    Dr Shannon Manning

  62. Phylogenetic Clades 6 and 8 of Enterohemorrhagic Escherichia coli O157:H7 With Particular stx Subtypes are More Frequently Found in Isolates From Hemolytic Uremic Syndrome Patients Than From Asymptomatic Carriers

    Article • Open Forum Infectious Diseases, January 2014, Oxford University Press (OUP)

    Dr Shannon Manning

  63. Acquisition and persistence of antimicrobial-resistant bacteria isolated from dogs and cats admitted to a veterinary teaching hospital

    Article • Journal of the American Veterinary Medical Association, October 2013, American Veterinary Medical Association (AVMA)

    Dr Shannon Manning

  64. Whole-Genome Shotgun Sequencing of a Colonizing Multilocus Sequence Type 17 Streptococcus agalactiae Strain

    Article • Journal of Bacteriology, October 2012, ASM Journals

    Dr Shannon Manning

  65. Correlation between In Vivo Biofilm Formation and Virulence Gene Expression in Escherichia coli O104:H4

    Article • PLoS ONE, July 2012, PLOS

    Dr Shannon Manning

  66. Draft Genome Sequences of the Diarrheagenic Escherichia coli Collection

    Article • Journal of Bacteriology, May 2012, ASM Journals

    Dr Marcus C Chibucos, Dr Shannon Manning

  67. Shiga toxin 2 overexpression in Escherichia coli O157:H7 strains associated with severe human disease

    Article • Microbial Pathogenesis, December 2011, Elsevier

    Dr Shannon Manning

  68. The Evolution of Foodborne Pathogens

    Article • December 2010, Springer Science + Business Media

    Dr Shannon Manning

  69. Increased Adherence and Expression of Virulence Genes in a Lineage of Escherichia coli O157:H7 Commonly Associated with Human Infections

    Article • PLoS ONE, April 2010, PLOS

    Dr Shannon Manning

  70. Association of Group B Streptococcus Colonization and Bovine Exposure: A Prospective Cross-Sectional Cohort Study

    Article • PLoS ONE, January 2010, PLOS

    Dr Shannon Manning

  71. Differences in adherence and virulence gene expression between two outbreak strains of enterohaemorrhagic Escherichia coli O157 : H7

    Article • Microbiology, November 2009, Society for General Microbiology

    Dr Shannon Manning

  72. Heat Waves, Impervious Surfaces, and Hospital Admissions among the Elderly in U.S. Cities

    Article • Epidemiology, November 2009, Wolters Kluwer Health

    Dr Shannon Manning

  73. Differential Expression of Virulence and Stress Fitness Genes between Escherichia coli O157:H7 Strains with Clinical or Bovine-Biased Genotypes

    Article • Applied and Environmental Microbiology, October 2009, ASM Journals

    Dr Shannon Manning

  74. Selection, Recombination, and Virulence Gene Diversity among Group B Streptococcal Genotypes

    Article • Journal of Bacteriology, July 2009, ASM Journals

    Dr Shannon Manning

  75. Prevalence of the Operon Encoding Subtilase Cytotoxin in Non-O157 Shiga Toxin-Producing Escherichia coli Isolated from Humans in the United States

    Article • Journal of Clinical Microbiology, July 2009, ASM Journals

    Dr Shannon Manning

  76. Multilocus Sequence Types Associated with Neonatal Group B Streptococcal Sepsis and Meningitis in Canada

    Article • Journal of Clinical Microbiology, January 2009, ASM Journals

    Dr Shannon Manning

  77. Genetic Diversity and Antimicrobial Resistance in Group B Streptococcus Colonizing Young, Nonpregnant Women

    Article • Clinical Infectious Diseases, August 2008, Oxford University Press (OUP)

    Dr Shannon Manning

  78. Genotypic Diversity and Serotype Distribution of Group B Streptococcus Isolated from Women Before and After Delivery

    Article • Clinical Infectious Diseases, June 2008, Oxford University Press (OUP)

    Dr Shannon Manning

  79. Genetic Differentiation of Escherichia coli O157:H7 Clades Associated with Human Disease by Real-Time PCR

    Article • Journal of Clinical Microbiology, April 2008, ASM Journals

    Dr Shannon Manning

  80. Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks

    Article • Proceedings of the National Academy of Sciences, March 2008, Proceedings of the National Academy of Sciences

    Dr Shannon Manning

  81. Risk Factors for Group B Streptococcal Colonization: Potential for Different Transmission Systems by Capsular Type

    Article • Annals of Epidemiology, November 2007, Elsevier

    Dr Shannon Manning

  82. Surveillance for Shiga Toxin–producing Escherichia coli, Michigan, 2001–2005

    Article • Emerging Infectious Diseases, February 2007, Centers for Disease Control and Prevention (CDC)

    Dr Shannon Manning

  83. Naturally occurring antibodies for the group B streptococcal surface immunogenic protein (Sip) in pregnant women and newborn babies

    Article • Vaccine, November 2006, Elsevier

    Dr Shannon Manning

  84. Incidence and Duration of Group B Streptococcus by Serotype Among Male and Female College Students Living in a Single Dormitory

    Article • Obstetrical & Gynecological Survey, August 2006, Wolters Kluwer Health

    Dr Shannon Manning

  85. The frequency of genes encoding three putative group B streptococcal virulence factors among invasive and colonizing isolates

    Article • BMC Infectious Diseases, July 2006, Springer Science + Business Media

    Dr Shannon Manning

  86. Vaccination for Group B Streptococcus during pregnancy: Attitudes and concerns of women and health care providers

    Article • Social Science & Medicine, July 2006, Elsevier

    Dr Shannon Manning

  87. Frequency of antimicrobial resistance among invasive and colonizing Group B Streptococcal isolates

    Article • BMC Infectious Diseases, March 2006, Springer Science + Business Media

    Dr Shannon Manning

  88. Incidence and Duration of Group B Streptococcus by Serotype among Male and Female College Students Living in a Single Dormitory

    Article • American Journal of Epidemiology, January 2006, Oxford University Press (OUP)

    Dr Shannon Manning

  89. DNA Polymorphism and Molecular Subtyping of the Capsular Gene Cluster of Group B Streptococcus

    Article • Journal of Clinical Microbiology, December 2005, ASM Journals

    Dr Shannon Manning

  90. Choosing an appropriate bacterial typing technique for epidemiologic studies

    Article • Epidemiologic Perspectives & Innovations, November 2005, Springer Science + Business Media

    Dr Shannon Manning

  91. Prevalence of Group B Streptococcus Colonization and Potential for Transmission by Casual Contact in Healthy Young Men and Women

    Article • Clinical Infectious Diseases, August 2004, Oxford University Press (OUP)

    Dr Shannon Manning

  92. Comparison of DNA Dot Blot Hybridization and Lancefield Capillary Precipitin Methods for Group B Streptococcal Capsular Typing

    Article • Journal of Clinical Microbiology, January 2004, ASM Journals

    Dr Shannon Manning

  93. Group B Streptococcus acquisition among college students living in a single dormitory

    Article • Annals of Epidemiology, September 2003, Elsevier

    Dr Shannon Manning

  94. Molecular serotyping of Group B Streptococci (GBS) by PCR and DNA dot blot hybridization

    Article • Annals of Epidemiology, September 2003, Elsevier

    Dr Shannon Manning

  95. RE: "UROPATHOGENIC ESCHERICHIA COLI ARE MORE LIKELY THAN COMMENSAL E. COLI TO BE SHARED BETWEEN HETEROSEXUAL SEX PARTNERS"

    Article • American Journal of Epidemiology, August 2003, Oxford University Press (OUP)

    Dr Shannon Manning

  96. Molecular epidemiology of Streptococcus Agalactiae Group B Streptococcus

    Article • Frontiers in Bioscience, January 2003, Frontiers in Bioscience

    Dr Shannon Manning

  97. Correlates of Antibiotic-Resistant Group B Streptococcus Isolated From Pregnant Women

    Article • Obstetrics and Gynecology, January 2003, Wolters Kluwer Health

    Dr Shannon Manning

  98. Correlates of antibiotic-resistant group B streptococcus isolated from pregnant women

    Article • Obstetrics and Gynecology, January 2003, Wolters Kluwer Health

    Dr Shannon Manning

  99. Uropathogenic Escherichia coli Are More Likely than Commensal E. coli to Be Shared between Heterosexual Sex Partners

    Article • American Journal of Epidemiology, December 2002, Oxford University Press (OUP)

    Dr Shannon Manning

  100. #89-S predictors of group b Streptococcus Colonization in healthy, young men and women

    Article • Annals of Epidemiology, October 2002, Elsevier

    Dr Shannon Manning

  101. Determinants of Co-Colonization with Group B Streptococcus Among Heterosexual College Couples

    Article • Epidemiology, September 2002, Wolters Kluwer Health

    Dr Shannon Manning

  102. Variations in 10 putative uropathogen virulence genes among urinary, faecal and peri-urethral Escherichia coli

    Article • Journal of Medical Microbiology, February 2002, Society for General Microbiology

    Dr Shannon Manning

  103. Group B Streptococcus Colonization in Male and Nonpregnant Female University Students: A Cross‐Sectional Prevalence Study

    Article • Clinical Infectious Diseases, January 2002, Oxford University Press (OUP)

    Dr Shannon Manning

  104. Frequency of Antibiotic Resistance among Group B Streptococcus Isolated from Healthy College Students

    Article • Clinical Infectious Diseases, December 2001, Oxford University Press (OUP)

    Dr Shannon Manning

  105. Prevalence of Known P-Fimbrial G Alleles inEscherichia coli and Identification of a New Adhesin Class

    Article • Clinical and Diagnostic Laboratory Immunology, May 2001, ASM Journals

    Dr Shannon Manning

  106. Prevalence and co-colonization with group b streptococcus (Gbs) Among heterosexual college couples

    Article • Annals of Epidemiology, October 2000, Elsevier

    Dr Shannon Manning

  107. Molecular Epidemiologic Approaches to Urinary Tract Infection Gene Discovery in Uropathogenic Escherichia coli

    Article • Infection and Immunity, April 2000, ASM Journals

    Dr Shannon Manning

  108. Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli

    Article • Molecular Biology and Evolution, July 1998, Oxford University Press (OUP)

    Dr Shannon Manning