All Stories

  1. Use as directed? A comparison of software tools intended to check rigor and transparency of published work

    Article • PLOS One, February 2026, PLOS

    Anita E Bandrowski

  2. Rigor and Transparency in two neurotrauma-publishing journals: editorial policies improve transparent reporting

    Article • January 2026, openRxiv

    Anita E Bandrowski

  3. Ten simple rules for being a co-author on a many-author non-empirical paper

    Article • PLoS Computational Biology, August 2025, PLOS

    Anita E Bandrowski

  4. Do organisms need an impact factor? Citations of key biological resources including model organisms reveal usage patterns and impact

    Article • PLOS One, August 2025, PLOS

    Anita E Bandrowski

  5. Automatic detection and extraction of key resources from tables in biomedical papers

    Article • BioData Mining, March 2025, Springer Science + Business Media

    Anita E Bandrowski

  6. Ten Simple Rules for Being a Co-author on a Many-Author Non-Empirical Paper

    Article • January 2025, Center for Open Science

    Anita E Bandrowski

  7. A Standardized Nomenclature Design for Systematic Referencing and Identification of Animal Cellular Material

    Article • Animals, May 2024, MDPI AG

    Anita E Bandrowski

  8. Improving the integrity and reproducibility of research that uses antibodies: a technical, data sharing, behavioral and policy challenge

    Article • mAbs, March 2024, Taylor & Francis

    Anita E Bandrowski

  9. Scaling of an antibody validation procedure enables quantification of antibody performance in major research applications

    Article • eLife, November 2023, eLife

    Anita E Bandrowski

  10. Establishing an early indicator for data sharing and reuse

    Article • Learned Publishing, November 2023, Wiley

    Anita E Bandrowski

  11. Open Science 2.0: Towards a truly collaborative research ecosystem

    Article • PLoS Biology, October 2023, PLOS

    Anita E Bandrowski

  12. A guide to the BRAIN Initiative Cell Census Network data ecosystem

    Article • PLoS Biology, June 2023, PLOS

    Shawn Tan, Dr Joseph R Ecker, Anita E Bandrowski

  13. Assessing the Effectiveness of SciScore in Supporting the Reproducibility of Scientific Research

    Article • Science Editor, June 2023, Council of Science Editors

    Martijn Roelandse, Anita E Bandrowski

  14. Quantifying the coverage of the human proteome with renewable antibodies

    Article • June 2023, Cold Spring Harbor Laboratory Press

    Harvinder Virk, Anita E Bandrowski

  15. PreprintMatch: A tool for preprint to publication detection shows global inequities in scientific publication

    Article • PLOS One, March 2023, PLOS

    Anita E Bandrowski

  16. The Antibody Registry: ten years of registering antibodies

    Article • Nucleic Acids Research, November 2022, Oxford University Press (OUP)

    Anita E Bandrowski

  17. Establishing Institutional Scores With the Rigor and Transparency Index: Large-scale Analysis of Scientific Reporting Quality

    Article • Journal of Medical Internet Research, June 2022, JMIR Publications Inc.

    Anita E Bandrowski, Martijn Roelandse

  18. Is the future of peer review automated?

    Article • BMC Research Notes, June 2022, Springer Science + Business Media

    Anita E Bandrowski

  19. Establishing Institutional Scores With the Rigor and Transparency Index: Large-scale Analysis of Scientific Reporting Quality (Preprint)

    Article • February 2022, JMIR Publications Inc.

    Anita E Bandrowski, Martijn Roelandse

  20. A decade of GigaScience: What can be learned from half a million RRIDs in the scientific literature?

    Article • GigaScience, January 2022, Oxford University Press (OUP)

    Anita E Bandrowski

  21. Opinion: Independent third-party entities as a model for validation of commercial antibodies

    Article • New Biotechnology, November 2021, Elsevier

    Anita E Bandrowski

  22. A multimodal cell census and atlas of the mammalian primary motor cortex

    Article • Nature, October 2021, Springer Science + Business Media

    Anita E Bandrowski, Dr Joseph R Ecker

  23. The SPARC DRC: Building a Resource for the Autonomic Nervous System Community

    Article • Frontiers in Physiology, June 2021, Frontiers

    Anita E Bandrowski

  24. Integration of evidence across human and model organism studies: A meeting report

    Article • Genes Brain & Behavior, June 2021, Wiley

    Anita E Bandrowski

  25. Antibody Watch: Text mining antibody specificity from the literature

    Article • PLoS Computational Biology, May 2021, PLOS

    Anita E Bandrowski

  26. Automated screening of COVID-19 preprints: can we help authors to improve transparency and reproducibility?

    Article • Nature Medicine, January 2021, Springer Science + Business Media

    Anita E Bandrowski

  27. The Rigor and Transparency Index Quality Metric for Assessing Biological and Medical Science Methods

    Article • iScience, November 2020, Elsevier

    Anita E Bandrowski, Martijn Roelandse

  28. A multimodal cell census and atlas of the mammalian primary motor cortex

    Article • October 2020, Cold Spring Harbor Laboratory Press

    Anita E Bandrowski, Dr Joseph R Ecker

  29. Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts

    Article • Computing in Science & Engineering, March 2020, Institute of Electrical & Electronics Engineers (IEEE)

    Anita E Bandrowski

  30. Rigor and Transparency Index, a new metric of quality for assessing biological and medical science methods

    Article • January 2020, Cold Spring Harbor Laboratory Press

    Anita E Bandrowski, Martijn Roelandse

  31. The Antibody Society’s antibody validation webinar series

    Article • mAbs, January 2020, Taylor & Francis

    Anita E Bandrowski

  32. Incidences of problematic cell lines are lower in papers that use RRIDs to identify cell lines

    Article • eLife, January 2019, eLife

    Anita E Bandrowski

  33. Assessing value of biomedical digital repositories

    Article • November 2017, PeerJ

    Anita E Bandrowski

  34. Assessing value of biomedical digital repositories

    Article • November 2017, PeerJ

    Anita E Bandrowski

  35. Assessing value of biomedical digital repositories

    Article • May 2017, PeerJ

    Anita E Bandrowski

  36. Assessing value of biomedical digital repositories

    Article • January 2017, PeerJ

    Anita E Bandrowski

  37. A proposal for validation of antibodies

    Article • Nature Chemical Biology, September 2016, Nature

    Anita E Bandrowski

  38. RRIDs: A Simple Step toward Improving Reproducibility through Rigor and Transparency of Experimental Methods

    Article • Neuron, May 2016, Elsevier

    Anita E Bandrowski

  39. The Ontology for Biomedical Investigations

    Article • PLOS One, April 2016, PLOS

    Dr Marcus C Chibucos, Anita E Bandrowski

  40. Reproducibility and conflicts in immune epitope data

    Article • Immunology, February 2016, Wiley

    Dr. Melissa Haendel, Anita E Bandrowski

  41. Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature

    Article • PLOS One, January 2016, PLOS

    Anita E Bandrowski

  42. SciCrunch: A Cooperative And Collaborative Data, Information, And Resource Discovery Portal For Scientific Communities

    Article • Frontiers in Neuroinformatics, January 2016, Frontiers

    Anita E Bandrowski

  43. The Resource Identification Initiative: a cultural shift in publishing

    Article • Brain and Behavior, December 2015, Wiley

    Anita E Bandrowski

  44. The Resource Identification Initiative: A Cultural Shift in Publishing

    Article • Neuroinformatics, November 2015, Springer Science + Business Media

    Anita E Bandrowski

  45. The Resource Identification Initiative: A cultural shift in publishing

    Article • The Journal of Comparative Neurology, November 2015, Wiley

    Professor Patrick R. Hof, Anita E Bandrowski

  46. The Resource Identification Initiative: A cultural shift in publishing

    Article • F1000Research, November 2015, Faculty of 1000, Ltd.

    Anita E Bandrowski

  47. The Resource Identification Initiative: A cultural shift in publishing

    Article • F1000Research, May 2015, Faculty of 1000, Ltd.

    Professor Patrick R. Hof, Anita E Bandrowski, Dr. Melissa Haendel, David Kennedy, Sean Hill, Martijn Roelandse

  48. Neuroscience Information Framework (NIF)

    Article • January 2015, Springer Science + Business Media

    Anita E Bandrowski

  49. Replication Attempt: “Effect of BMAP-28 Antimicrobial Peptides on Leishmania Major Promastigote and Amastigote Growth: Role of Leishmanolysin in Parasite Survival”

    Article • PLOS One, December 2014, PLOS

    Dr Heather Piwowar, Anita E Bandrowski

  50. Big data from small data: data-sharing in the 'long tail' of neuroscience

    Article • Nature Neuroscience, October 2014, Nature

    Anita E Bandrowski

  51. OMICtools: an informative directory for multi-omic data analysis

    Article • Database, July 2014, Oxford University Press (OUP)

    Anita E Bandrowski

  52. Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies

    Article • Frontiers in Neuroinformatics, June 2014, Frontiers

    Anita E Bandrowski

  53. Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources

    Article • Frontiers in Neuroinformatics, May 2014, Frontiers

    Anita E Bandrowski

  54. Early experiences in developing and managing the neuroscience gateway

    Article • Concurrency and Computation Practice and Experience, May 2014, Wiley

    Anita E Bandrowski

  55. Promoting research resource identification at JCN

    Article • The Journal of Comparative Neurology, April 2014, Wiley

    Professor Patrick R. Hof, Anita E Bandrowski

  56. Describing neurophysiology data and metadata with OEN, the Ontology for Experimental Neurophysiology

    Article • Frontiers in Neuroinformatics, January 2014, Frontiers

    Anita E Bandrowski

  57. The Neuroscience Information Framework (NIF): A Unified Semantic Framework and Associated Tools for Discovery, Integration, and Utilization of Biomedical Data and Resources on the Web

    Article • Frontiers in Neuroinformatics, January 2014, Frontiers

    Anita E Bandrowski

  58. The neuroscience gateway portal: high performance computing made easy

    Article • BMC Neuroscience, January 2014, Springer Science + Business Media

    Anita E Bandrowski

  59. SciCrunch: A cooperative and collaborative data and resource discovery platform for scientific communities

    Article • Frontiers in Neuroinformatics, January 2014, Frontiers

    Anita E Bandrowski

  60. Orchestration of web services in the NIF project: using the Kepler workflow engine for data fusion

    Article • Frontiers in Neuroinformatics, January 2014, Frontiers

    Anita E Bandrowski

  61. Identifying research resources in biomedical literature should be easy

    Article • Frontiers in Neuroinformatics, January 2014, Frontiers

    Anita E Bandrowski

  62. Exploring Mammalian Brain Connectivity using NeuroLex

    Article • Frontiers in Neuroinformatics, January 2014, Frontiers

    Anita E Bandrowski

  63. Semantic query reformulation

    Article • July 2013, ACM (Association for Computing Machinery)

    Anita E Bandrowski, Amarnath Gupta

  64. The Ontology for Experimental Neurophysiology: a first step toward semantic annotations of neurophysiology data and metadata.

    Article • Frontiers in Neuroinformatics, January 2013, Frontiers

    Anita E Bandrowski

  65. Using the NIFSTD Ontology to Improve PubMed Search Results

    Article • Frontiers in Neuroinformatics, January 2013, Frontiers

    Anita E Bandrowski

  66. Neuroscience Information Framework (NIF)

    Article • January 2013, Springer Science + Business Media

    Anita E Bandrowski

  67. A Unified Research Resource Layer; Experiences from the Neuroscience Information Framework

    Article • Frontiers in Neuroinformatics, January 2013, Frontiers

    Anita E Bandrowski

  68. A neuroscience gateway

    Article • January 2013, ACM (Association for Computing Machinery)

    Anita E Bandrowski

  69. The Neuroscience Information Framework (NIF): A Unified Semantic Framework and Associated Tools for Discovery, Integration, and Utilization of Biomedical Data and Resources on the Web

    Article • Frontiers in Neuroinformatics, January 2013, Frontiers

    Anita E Bandrowski

  70. A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework

    Article • Database, March 2012, Oxford University Press (OUP)

    Anita E Bandrowski

  71. The UCLA multimodal connectivity database: a web-based platform for brain connectivity matrix sharing and analysis

    Article • Frontiers in Neuroinformatics, January 2012, Frontiers

    Anita E Bandrowski

  72. Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics

    Article • Procedia Computer Science, January 2012, Elsevier

    Anita E Bandrowski

  73. Development and use of Ontologies Inside the Neuroscience Information Framework: A Practical Approach

    Article • Frontiers in Genetics, January 2012, Frontiers

    Anita E Bandrowski

  74. A Survey of the Neuroscience Resource Landscape

    Article • January 2012, Elsevier

    Anita E Bandrowski

  75. Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience

    Article • January 2012, IOS Press

    Anita E Bandrowski

  76. Modulation of epileptiform activity by glutamine and system A transport in a model of post-traumatic epilepsy

    Article • Neurobiology of Disease, February 2007, Elsevier

    Anita E Bandrowski, John Huguenard

  77. Cortical Injury Affects Short-Term Plasticity of Evoked Excitatory Synaptic Currents

    Article • Journal of Neurophysiology, August 2004, American Physiological Society

    Anita E Bandrowski

  78. Baseline Glutamate Levels Affect Group I and II mGluRs in Layer V Pyramidal Neurons of Rat Sensorimotor Cortex

    Article • Journal of Neurophysiology, November 2002, American Physiological Society

    Anita E Bandrowski, John Huguenard

  79. Activation of metabotropic glutamate receptors by repetitive stimulation in auditory cortex

    Article • Synapse, April 2002, Wiley

    Anita E Bandrowski

  80. Tetanic stimulation and metabotropic glutamate receptor agonists modify synaptic responses and protein kinase activity in rat auditory cortex

    Article • Brain Research, March 2001, Elsevier

    Anita E Bandrowski

  81. Cholinergic synaptic potentials in the supragranular layers of auditory cortex

    Article • Synapse, January 2001, Wiley

    Anita E Bandrowski

  82. Quantitative ultrastructure of slowly adapting lingual afferent terminals in the principal and oral nuclei in the cat

    Article • Synapse, January 2001, Wiley

    Anita E Bandrowski

  83. Metabotropic glutamate receptors modify ionotropic glutamate responses in neocortical pyramidal cells and interneurons

    Article • Experimental Brain Research, January 2001, Springer Science + Business Media

    Anita E Bandrowski

  84. Muscarinic reduction of GABAergic synaptic potentials results in disinhibition of the AMPA/kainate-mediated EPSP in auditory cortex

    Article • Brain Research, May 1997, Elsevier

    Anita E Bandrowski

  85. Activation of muscarinic receptors modulates NMDA receptor-mediated responses in auditory cortex

    Article • Experimental Brain Research, March 1997, Springer Science + Business Media

    Anita E Bandrowski