All Stories

  1. Artificial intelligence and human microbiome: A brief narrative review

    Article • Clinical Nutrition Open Science, February 2025, Elsevier

    Gabriel Fernandes

  2. Unraveling the Complexity of Chikungunya Virus Infection Immunological and Genetic Insights in Acute and Chronic Patients

    Article • Genes, October 2024, MDPI AG

    Gabriel Fernandes

  3. Gut microbiota and type 2 diabetes associaction: A meta-analysis of 16S studies and their methodological challenges

    Article • October 2024, Cold Spring Harbor Laboratory Press

    Gabriel Fernandes

  4. GUT MICROBIOTA ACROSS NORMAL GESTATION AND GESTATIONAL DIABETES MELLITUS: A COHORT ANALYSIS

    Article • January 2024, Wiley

    Gabriel Fernandes

  5. Evaluation of gut microbiota predictive potential associated with phenotypic characteristics to identify multifactorial diseases

    Article • Gut Microbes, January 2024, Taylor & Francis

    Gabriel Fernandes

  6. Methotrexate and Non-Surgical Periodontal Treatment Change the Oral–Gut Microbiota in Rheumatoid Arthritis: A Prospective Cohort Study

    Article • Microorganisms, December 2023, MDPI AG

    Gabriel Fernandes

  7. Methotrexate and Non-surgical Periodontal Treatment Change the Oral-Gut Microbiota in Rheumatoid Arthritis: A Longitudinal Study

    Article • December 2023, MDPI AG

    Gabriel Fernandes

  8. Comparative metatranscriptome analysis of Brazilian milk and water kefir beverages

    Article • International Microbiology, September 2023, Springer Science + Business Media

    Professor Alvaro Cantini Nunes, Dr Analia G Abraham, Alvaro Cantini Nunes, Gabriel Fernandes

  9. Red Meat Intake, Indole-3-Acetate, and Dorea longicatena Together Affect Insulin Resistance after Gastric Bypass

    Article • Nutrients, February 2023, MDPI AG

    Gabriel Fernandes

  10. Global Molecular Response of Paracoccidioides brasiliensis to Zinc Deprivation: Analyses at Transcript, Protein and MicroRNA Levels

    Article • Journal of Fungi, February 2023, MDPI AG

    Gabriel Fernandes

  11. Molecular characterization of a new SARS-CoV-2 recombinant cluster XAG identified in Brazil

    Article • Frontiers in Medicine, September 2022, Frontiers

    Gabriel Fernandes, PhD Gabriel L Wallau

  12. Gut Microbiota across Normal Gestation and Gestational Diabetes Mellitus: A Cohort Analysis

    Article • Metabolites, August 2022, MDPI AG

    Gabriel Fernandes

  13. Gestational weight gain and visceral adiposity in adult offspring: Is there a link with the fecal abundance of Acidaminococcus genus?

    Article • European Journal of Clinical Nutrition, July 2022, Springer Science + Business Media

    Gabriel Fernandes

  14. Transcriptomic modulation in response to an intoxication with deltamethrin in a population of Triatoma infestans with low resistance to pyrethroids

    Article • PLoS Neglected Tropical Diseases, June 2022, PLOS

    Gabriel Fernandes

  15. Booster dose of BNT162b2 after two doses of CoronaVac improves neutralization of SARS-CoV-2 Omicron variant

    Article • Communications Medicine, June 2022, Springer Science + Business Media

    Gabriel Fernandes

  16. Evaluating hierarchical machine learning approaches to classify biological databases

    Article • Briefings in Bioinformatics, June 2022, Oxford University Press (OUP)

    Gabriel Fernandes

  17. Methotrexate promotes recovery of arthritis-induced alveolar bone loss and modifies the composition of the oral-gut microbiota

    Article • Anaerobe, June 2022, Elsevier

    Gabriel Fernandes

  18. Associations of Blautia Genus With Early-Life Events and Later Phenotype in the NutriHS

    Article • Frontiers in Cellular and Infection Microbiology, May 2022, Frontiers

    Gabriel Fernandes

  19. Long COVID-19 syndrome: a 14-months longitudinal study during the two first epidemic peaks in Southeast Brazil

    Article • Transactions of the Royal Society of Tropical Medicine and Hygiene, May 2022, Oxford University Press (OUP)

    Gabriel Fernandes

  20. Egg-laying by female Aedes aegypti shapes the bacterial communities of breeding sites

    Article • February 2022, Cold Spring Harbor Laboratory Press

    Gabriel Fernandes

  21. Effects of activated sludge and UV disinfection processes on the bacterial community and antibiotic resistance profile in a municipal wastewater treatment plant

    Article • Environmental Science and Pollution Research, January 2022, Springer Science + Business Media

    Gabriel Fernandes

  22. Are studies of human gut microbiome the new fad following the SNP mainstream?

    Article • Archives of Endocrinology and Metabolism, January 2022, Archives of Endocrinology and Metabolism

    Gabriel Fernandes

  23. Changes in antennal gene expression underlying sensory system maturation in Rhodnius prolixus

    Article • Insect Biochemistry and Molecular Biology, January 2022, Elsevier

    Gabriel Fernandes

  24. Fatores associados ao adoecimento por hanseníase em contatos: revisão sistemática e metanálise

    Article • Revista Brasileira de Epidemiologia, January 2021, FapUNIFESP (SciELO)

    Gabriel Fernandes

  25. Beneficial effects resulting from oral administration of Escherichia coli Nissle 1917 on a chronic colitis model

    Article • Beneficial Microbes, December 2020, Wageningen Academic Publishers

    Gabriel Fernandes

  26. Prophylactic Faecalibacterium prausnitzii treatment prevents the acute breakdown of colonic epithelial barrier in a preclinical model of pelvic radiation disease

    Article • Gut Microbes, September 2020, Taylor & Francis

    Gabriel Fernandes

  27. Unraveling the xylanolytic potential of Acidobacteria bacterium AB60 from Cerrado soils

    Article • FEMS Microbiology Letters, September 2020, Oxford University Press (OUP)

    Dr Cristine C Barreto, Gabriel Fernandes

  28. Maternal dietary omega-3 deficiency worsens the deleterious effects of prenatal inflammation on the gut-brain axis in the offspring across lifetime

    Article • Neuropsychopharmacology, August 2020, Springer Science + Business Media

    Gabriel Fernandes

  29. Soil Acidobacteria Strain AB23 Resistance to Oxidative Stress Through Production of Carotenoids

    Article • Microbial Ecology, July 2020, Springer Science + Business Media

    Dr Cristine C Barreto, Gabriel Fernandes

  30. Exploring the resistome, virulome and microbiome of drinking water in environmental and clinical settings

    Article • Water Research, May 2020, Elsevier

    Gabriel Fernandes

  31. Oral delivery of pancreatitis‐associated protein by Lactococcus lactis displays protective effects in dinitro‐benzenesulfonic‐acid‐induced colitis model and is able to modulate the composition of the microbiota

    Article • Environmental Microbiology, September 2019, Wiley

    Dr Luis G BERMUDEZ-HUMARAN, Gabriel Fernandes, Dr Vasco Azevedo

  32. Genomic signatures and co‐occurrence patterns of the ultra‐small Saccharimonadia (phylum CPR/Patescibacteria) suggest a symbiotic lifestyle

    Article • Molecular Ecology, September 2019, Wiley

    Gabriel Fernandes

  33. Staphylococcus epidermidis role in the skin microenvironment

    Article • Journal of Cellular and Molecular Medicine, July 2019, Wiley

    Gabriel Fernandes, Dr Vasco Azevedo

  34. Oral microbial dysbiosis linked to worsened periodontal condition in rheumatoid arthritis patients

    Article • Scientific Reports, June 2019, Springer Science + Business Media

    Gabriel Fernandes

  35. Immune and metabolic shifts during neonatal development reprogram liver identity and function

    Article • Journal of Hepatology, December 2018, Elsevier

    Gabriel Fernandes

  36. Comparative transcriptome analyses of magainin I-susceptible and -resistant Escherichia coli strains

    Article • Microbiology, November 2018, Society for General Microbiology

    Gabriel Fernandes

  37. Gut microbiome modulation during treatment of mucositis with the dairy bacterium Lactococcus lactis and recombinant strain secreting human antimicrobial PAP

    Article • Scientific Reports, October 2018, Springer Science + Business Media

    Dr Luis G BERMUDEZ-HUMARAN, Gabriel Fernandes, Dr Vasco Azevedo

  38. The TLR1 gene is associated with higher protection from leprosy in women

    Article • PLOS One, October 2018, PLOS

    Gabriel Fernandes

  39. TAG.ME: Taxonomic Assignment of Genetic Markers for Ecology

    Article • February 2018, Cold Spring Harbor Laboratory Press

    Gabriel Fernandes

  40. Insights into the Genome Sequence of Chromobacterium amazonense Isolated from a Tropical Freshwater Lake

    Article • International Journal of Genomics, January 2018, Hindawi Publishing Corporation

    Gabriel Fernandes

  41. MicrobiomeDB: a systems biology platform for integrating, mining and analyzing microbiome experiments

    Article • Nucleic Acids Research, November 2017, Oxford University Press (OUP)

    Professor Jessica C Kissinger, Gabriel Fernandes

  42. Genomic Comparison among Lethal Invasive Strains of Streptococcus pyogenes Serotype M1

    Article • Frontiers in Microbiology, October 2017, Frontiers

    Gabriel Fernandes

  43. Single-cell sequencing unveils the lifestyle and CRISPR-based population history of Hydrotalea sp. in acid mine drainage

    Article • Molecular Ecology, September 2017, Wiley

    Gabriel Fernandes

  44. Worse inflammatory profile in omnivores than in vegetarians associates with the gut microbiota composition

    Article • Diabetology & Metabolic Syndrome, August 2017, Springer Science + Business Media

    Gabriel Fernandes

  45. Paracoccidioides brasiliensis presents metabolic reprogramming and secretes a serine proteinase during murine infection

    Article • Virulence, August 2017, Taylor & Francis

    Gabriel Fernandes

  46. Genome-wide signatures of complex introgression and adaptive evolution in the big cats

    Article • Science Advances, July 2017, American Association for the Advancement of Science

    Gabriel Fernandes

  47. Comparative transcriptomic analysis indicates genes associated with local and systemic resistance to Colletotrichum graminicola in maize

    Article • Scientific Reports, May 2017, Springer Science + Business Media

    Gabriel Fernandes

  48. Inositol 1, 4, 5-trisphosphate-dependent nuclear calcium signals regulate angiogenesis and cell motility in triple negative breast cancer

    Article • PLOS One, April 2017, PLOS

    Luciola Barcelos, Gabriel Fernandes

  49. Gut microbiota interactions with the immunomodulatory role of vitamin D in normal individuals

    Article • Metabolism, April 2017, Elsevier

    Gabriel Fernandes

  50. Subgingival microbiota dysbiosis in systemic lupus erythematosus: association with periodontal status

    Article • Microbiome, March 2017, Springer Science + Business Media

    Gabriel Fernandes

  51. Enterotype May Drive the Dietary-Associated Cardiometabolic Risk Factors

    Article • Frontiers in Cellular and Infection Microbiology, February 2017, Frontiers

    Gabriel Fernandes

  52. Combination of Mass Cytometry and Imaging Analysis Reveals Origin, Location, and Functional Repopulation of Liver Myeloid Cells in Mice

    Article • Gastroenterology, December 2016, Elsevier

    Gabriel Fernandes

  53. Akkermansia muciniphila mediates negative effects of IFNγ on glucose metabolism

    Article • Nature Communications, November 2016, Springer Science + Business Media

    Gabriel Fernandes

  54. An Integrative Approach Uncovers Biomarkers that Associate with Clinically Relevant Disease Outcomes in Vulvar Carcinoma

    Article • Molecular Cancer Research, August 2016, American Association for Cancer Research (AACR)

    Gabriel Fernandes

  55. Draft Genome Sequence of Hydrotalea flava Strain CCUG 51397 T

    Article • Genome Announcements, June 2016, ASM Journals

    Gabriel Fernandes

  56. ZIKV – CDB: A Collaborative Database to Guide Research Linking SncRNAs and ZIKA Virus Disease Symptoms

    Article • PLoS Neglected Tropical Diseases, June 2016, PLOS

    Gabriel Fernandes

  57. Draft Genome Sequence of “ Acidibacillus ferrooxidans ” ITV01, a Novel Acidophilic Firmicute Isolated from a Chalcopyrite Mine Drainage Site in Brazil

    Article • Genome Announcements, April 2016, ASM Journals

    Gabriel Fernandes

  58. Venom gland transcriptome analyses of two freshwater stingrays (Myliobatiformes: Potamotrygonidae) from Brazil

    Article • Scientific Reports, February 2016, Springer Science + Business Media

    Gabriel Fernandes

  59. Effects of Argentilactone on the Transcriptional Profile, Cell Wall and Oxidative Stress of Paracoccidioides spp.

    Article • PLoS Neglected Tropical Diseases, January 2016, PLOS

    Gabriel Fernandes

  60. HD5 and HBD1 variants’ solvation potential energy correlates with their antibacterial activity against Escherichia coli

    Article • Biopolymers, January 2016, Wiley

    Octavio Franco, Gabriel Fernandes

  61. Isolation and whole genome sequence of clinical leptospira spp. from leptospirosis outbreaks

    Article • Genome Announcements, December 2015, ASM Journals

    Ms Maria Raquel Cosate, Gabriel Fernandes

  62. Paracoccidioides spp. ferrous and ferric iron assimilation pathways

    Article • Frontiers in Microbiology, August 2015, Frontiers

    Gabriel Fernandes

  63. Insights into novel antimicrobial compounds and antibiotic resistance genes from soil metagenomes

    Article • Frontiers in Microbiology, September 2014, Frontiers

    Gabriel Fernandes

  64. Transcriptional and Proteomic Responses to Carbon Starvation in Paracoccidioides

    Article • PLoS Neglected Tropical Diseases, May 2014, PLOS

    Gabriel Fernandes

  65. Shedding Some Light over the Floral Metabolism by Arum Lily (Zantedeschia aethiopica) Spathe De Novo Transcriptome Assembly

    Article • PLOS One, March 2014, PLOS

    Octavio Franco, Gabriel Fernandes

  66. Exercise induction of gut microbiota modifications in obese, non-obese and hypertensive rats

    Article • BMC Genomics, January 2014, Springer Science + Business Media

    Bernardo Petriz, Gabriel Fernandes

  67. Identification of a novel subtype of feline immunodeficiency virus in a population of naturally infected felines in the Brazilian Federal District

    Article • Virus Genes, January 2013, Springer Science + Business Media

    Gabriel Fernandes

  68. Amino acids biosynthesis and nitrogen assimilation pathways: a great genomic deletion during eukaryotes evolution

    Article • BMC Genomics, December 2011, Springer Science + Business Media

    Gabriel Fernandes

  69. Preimplantation development regulatory pathway construction through a text-mining approach

    Article • BMC Genomics, December 2011, Springer Science + Business Media

    Gabriel Fernandes

  70. Erratum: Enterotypes of the human gut microbiome

    Article • Nature, June 2011, Springer Science + Business Media

    Gabriel Fernandes

  71. Enterotypes of the human gut microbiome

    Article • Nature, April 2011, Springer Science + Business Media

    Professor Julian Parkhill, Jan Knol, Gabriel Fernandes

  72. A procedure to recruit members to enlarge protein family databases - the building of UECOG (UniRef-Enriched COG Database) as a model

    Article • Genetics and Molecular Research, January 2008, Genetics and Molecular Research

    Gabriel Fernandes

  73. Testing the performance of automated annotation of ESTs with the Kegg Orthology (KO) database demonstrates lack of completeness of clusters

    Article • Genetics and Molecular Research, January 2008, Genetics and Molecular Research

    Gabriel Fernandes