All Stories

  1. The complexities and versatility of the RAS-to-ERK signalling system in normal and cancer cells
  2. Rac1 and RhoA: Networks, loops and bistability
  3. Three-factor models versus time series models: quantifying time-dependencies of interactions between stimuli in cell biology and psychobiology for short longitudinal data
  4. Feedback regulation in cell signalling: Lessons for cancer therapeutics
  5. Bistability in the Rac1, PAK, and RhoA Signaling Network Drives Actin Cytoskeleton Dynamics and Cell Motility Switches
  6. Phosphorylation of RAF Kinase Dimers Drives Conformational Changes that Facilitate Transactivation
  7. Phosphorylation of RAF Kinase Dimers Drives Conformational Changes that Facilitate Transactivation
  8. Abstract CN05-03: Personalized cancer diagnostics and therapeutics based on the computational modeling of signal transduction networks
  9. MST2-RASSF protein–protein interactions through SARAH domains
  10. Drug Resistance Resulting from Kinase Dimerization Is Rationalized by Thermodynamic Factors Describing Allosteric Inhibitor Effects
  11. The dynamic control of signal transduction networks in cancer cells
  12. DYVIPAC: an integrated analysis and visualisation framework to probe multi-dimensional biological networks
  13. G Protein–Coupled Receptor Signaling Networks from a Systems Perspective
  14. Mitogen-Inducible Gene-6 Mediates Feedback Inhibition from Mutated BRAF towards the Epidermal Growth Factor Receptor and Thereby Limits Malignant Transformation
  15. Silence on the relevant literature and errors in implementation
  16. Signalling mechanisms regulating phenotypic changes in breast cancer cells
  17. Network-based identification of feedback modules that control RhoA activity and cell migration
  18. Advances in dynamic modeling of colorectal cancer signaling-network regions, a path toward targeted therapies
  19. Species differential regulation of COX2 can be described by an NFκB-dependent logic AND gate
  20. Competing to coordinate cell fate decisions: the MST2-Raf-1 signaling device
  21. A dynamic model of the hypoxia-inducible factor 1a (HIF-1a) network
  22. Feedforward regulation of mRNA stability by prolonged extracellular signal-regulated kinase activity
  23. Protein–protein interactions generate hidden feedback and feed-forward loops to trigger bistable switches, oscillations and biphasic dose–responses
  24. Ubiquitin chain specific auto-ubiquitination triggers sustained oscillation, bistable switches and excitable firing
  25. HER2-HER3 dimer quantification by FLIM-FRET predicts breast cancer metastatic relapse independently of HER2 IHC status
  26. The ErbB4 CYT2 variant protects EGFR from ligand-induced degradation to enhance cancer cell motility
  27. Nonlinear signalling networks and cell-to-cell variability transform external signals into broadly distributed or bimodal responses
  28. Protein interaction switches coordinate Raf-1 and MST2/Hippo signalling
  29. The APC Network Regulates the Removal of Mutated Cells from Colonic Crypts
  30. Navigating the Multilayered Organization of Eukaryotic Signaling: A New Trend in Data Integration
  31. Evaluating Strategies to Normalise Biological Replicates of Western Blot Data
  32. Polyubiquitin chain assembly and organization determine the dynamics of protein activation and degradation
  33. Systems biology-embedded target validation: improving efficacy in drug discovery
  34. Systems medicine: opportunities and challenges for systems biology approaches
  35. Pseudophosphatase STYX modulates cell-fate decisions and cell migration by spatiotemporal regulation of ERK1/2
  36. A dynamic model of the hypoxia-inducible factor 1  (HIF-1 ) network
  37. Control of the G-protein cascade dynamics by GDP dissociation inhibitors
  38. It takes two to tango – signalling by dimeric Raf kinases
  39. When ubiquitination meets phosphorylation: a systems biology perspective of EGFR/MAPK signalling
  40. Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology
  41. Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise
  42. Catching transcriptional regulation by thermostatistical modeling
  43. Computational Approaches for Analyzing Information Flow in Biological Networks
  44. Versatility of Cooperative Transcriptional Activation: A Thermodynamical Modeling Analysis for Greater-Than-Additive and Less-Than-Additive Effects
  45. Signalling by protein phosphatases and drug development: a systems-centred view
  46. Cross-talk between mitogenic Ras/MAPK and survival PI3K/Akt pathways: a fine balance
  47. Mammalian protein expression noise: scaling principles and the implications for knockdown experiments
  48. Bimodal Protein Distributions in Heterogeneous Oscillating Systems
  49. The topology design principles that determine the spatiotemporal dynamics of G-protein cascades
  50. Crosstalk and Signaling Switches in Mitogen-Activated Protein Kinase Cascades
  51. Understanding Cell Fate Decisions by Identifying Crucial System Dynamics
  52. Switches, Excitable Responses and Oscillations in the Ring1B/Bmi1 Ubiquitination System
  53. An Integrated Bayesian Framework for Identifying Phosphorylation Networks in Stimulated Cells
  54. Prolactin-stimulated activation of ERK1/2 mitogen-activated protein kinases is controlled by PI3-kinase/Rac/PAK signaling pathway in breast cancer cells
  55. Signalling over a distance: gradient patterns and phosphorylation waves within single cells
  56. PI3K/Akt-sensitive MEK-independent compensatory circuit of ERK activation in ER-positive PI3K-mutant T47D breast cancer cells
  57. Formation of Intracellular Concentration Landscapes by Multisite Protein Modification
  58. Signalling ballet in space and time
  59. Ligand-Specific c-Fos Expression Emerges from the Spatiotemporal Control of ErbB Network Dynamics
  60. Spatially distributed cell signalling
  61. Toggle switches, pulses and oscillations are intrinsic properties of the Src activation/deactivation cycle
  62. Endocytosis and signalling: A meeting with mathematics
  63. Four‐dimensional dynamics of MAPK information‐processing systems
  64. Systems-level interactions between insulin–EGF networks amplify mitogenic signaling
  65. Positional Information Generated by Spatially Distributed Signaling Cascades
  66. Molecular Dynamics Simulations Reveal that Tyr-317 Phosphorylation Reduces Shc Binding Affinity for Phosphotyrosyl Residues of Epidermal Growth Factor Receptor
  67. Domain-oriented reduction of rule-based network models
  68. Giving Space to Cell Signaling
  69. Signaling cascades as cellular devices for spatial computations
  70. Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses
  71. Multistrip Western blotting to increase quantitative data output
  72. Untangling the signalling wires
  73. Oscillatory dynamics arising from competitive inhibition and multisite phosphorylation
  74. Long-range signaling by phosphoprotein waves arising from bistability in protein kinase cascades
  75. Bistability from double phosphorylation in signal transduction
  76. Effects of sequestration on signal transduction cascades
  77. Cell-signalling dynamics in time and space
  78. Trading the micro-world of combinatorial complexity for the macro-world of protein interaction domains
  79. Theoretical model of the full-length human p52 Shc adaptor protein obtained by homology modeling and 2 ns Molecular Dynamics simulations
  80. Signaling through Receptors and Scaffolds: Independent Interactions Reduce Combinatorial Complexity
  81. Inference of signaling and gene regulatory networks by steady-state perturbation experiments: structure and accuracy
  82. Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades
  83. Control of spatially heterogeneous and time-varying cellular reaction networks: a new summation law
  84. Four-dimensional organization of protein kinase signaling cascades: the roles of diffusion, endocytosis and molecular motors
  85. Modular Response Analysis of Cellular Regulatory Networks
  86. MAP kinase cascade signaling and endocytic trafficking: a marriage of convenience?
  87. Control Analysis for Autonomously Oscillating Biochemical Networks
  88. Temperature Dependence of the Epidermal Growth Factor Receptor Signaling Network Can Be Accounted for by a Kinetic Model †
  89. Occurrence of paradoxical or sustained control by an enzyme when overexpressed: necessary conditions and experimental evidence with regard to hepatic glucokinase
  90. Diffusion control of protein phosphorylation in signal transduction pathways
  91. Diffusion control of protein phosphorylation in signal transduction pathways
  92. Kinetics and control of oxidative phosphorylation in rat liver mitochondria after chronic ethanol feeding
  93. Kinetics and control of oxidative phosphorylation in rat liver mitochondria after chronic ethanol feeding
  94. Why cytoplasmic signalling proteins should be recruited to cell membranes
  95. Negative feedback and ultrasensitivity can bring about oscillations in the mitogen-activated protein kinase cascades
  96. Cellular information transfer regarded from a stoichiometry and control analysis perspective
  97. Engineering a Living Cell to Desired Metabolite Concentrations and Fluxes: Pathways with Multifunctional Enzymes
  98. Metabolic Control From The Back Benches: Biochemistry Towards Biocomplexity
  99. Control Analysis of Stationary Forced Oscillations
  100. Spatial gradients of cellular phospho-proteins
  101. Live Control of the Living Cell
  102. The Intracellular Signaling Network as a Target for Ethanol
  103. Metabolic design: How to engineer a living cell to desired metabolite concentrations and fluxes
  104. Control analysis of metabolic systems involving quasi-equilibrium reactions
  105. Thermodynamics of complexity. The live cell
  106. Subtleties in control by metabolic channelling and enzyme organization
  107. A model of O·2 -generation in the complex III of the electron transport chain
  108. Why do protein kinase cascades have more than one level?
  109. Control Analysis of Periodic Phenomena in Biological Systems
  110. Ca 2+ stimulates both the respiratory and phosphorylation subsystems in rat heart mitochondria
  111. Control analysis of glycolytic oscillations
  112. Molecular Control Analysis: Control within Proteins and Molecular Processes
  113. Strong control on the transit time in metabolic channelling
  114. Paradoxical control properties of enzymes within pathways: can activation cause an enzyme to have increased control?
  115. Effect of channelling on the concentration of bulk-phase intermediates as cytosolic proteins become more concentrated
  116. Steady-State Characterization of Systems with Moiety-Conservations Made Easy: Matrix Equations of Metabolic Control Analysis and Biochemical System Theory
  117. Direct Transfer of Control and Multidrug Resistance
  118. Calcium Indirectly Increases the Control Exerted by the Adenine Nucleotide Translocator over 2-Oxoglutarate Oxidation in Rat Heart Mitochondria
  119. Defining control coefficients in non-ideal metabolic pathways
  120. Elusive control
  121. Composite control of cell function: metabolic pathways behaving as single control units
  122. Control theory of group transfer pathways
  123. How to reveal various aspects of regulation in group-transfer pathways
  124. CONTROL THEORY OF CELL METABOLISM: TOWARDS MORE REALISTIC “NON-IDEAL” SYSTEMS
  125. DYNAMIC ASPECTS OF CASCADE-TYPE METABOLIC REGULATION
  126. Control theory of metabolic channelling
  127. Control theory of one enzyme
  128. Control by Enzymes, Coenzymes and Conserved Moieties. A Generalisation of the Connectivity Theorem of Metabolic Control Analysis
  129. Rate limitation within a single enzyme is directly related to enzyme intermediate levels
  130. Getting to the inside of cells using metabolic control analysis
  131. Control theory of metabolic channelling
  132. Control theory of metabolic channelling
  133. Dramatic changes in control properties that accompany channelling and metabolite sequestration
  134. Kinetic models of coupling between H+ and Na+-translocation and ATP synthesis/hydrolysis by F0F1-ATPases: Can a cell utilize both $$\Delta \bar \mu _{H^ + } $$ and $$\Delta \bar \mu _{Na^ + } $$ for ATP synthesis underin vivo conditions using the same ...
  135. The function of ATP/ADP translocator in the regulation of mitochondrial respiration during development of heart ischemic injury
  136. Metabolic channelling and control of the flux
  137. ‘Channelled’ pathways can be more sensitive to specific regulatory signals
  138. The sum of the control coefficients of all enzymes on the flux through a group-transfer pathway can be as high as two
  139. Sum of the Flux Control Coefficients: What is it Equal to in Different Systems?
  140. Multiplicity of Control
  141. Control of the metabolic flux in a system with high enzyme concentrations and moiety-conserved cycles. The sum of the flux control coefficients can drop significantly below unity
  142. Control of mitochondrial oxidative phosphorylation
  143. The Regulation of Glycolysis in Human Erythrocytes. The Dependence of the Glycolytic Flux on the ATP Concentration
  144. Employing Systems Biology to Quantify Receptor Tyrosine Kinase Signaling in Time and Space
  145. Mechanisms Generating Ultrasensitivity, Bistability, and Oscillations in Signal Transduction
  146. Nonlinear control and self-organization
  147. Mechanistic and modular approaches to modeling and inference of cellular regulatory networks