All Stories

  1. Agentic AI-Assisted Coding Offers a Unique Opportunity to Instill Epistemic Grounding during Software Development

    Article • Journal of Proteome Research, July 2026, American Chemical Society (ACS)

    Dr Magnus Palmblad

  2. Instrument–Software Synergy in Proteomics: Systematic Evaluation across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods

    Article • Journal of Proteome Research, July 2026, American Chemical Society (ACS)

    Dr Magnus Palmblad

  3. Hierarchy of MS-Based Evidence

    Article • Journal of Proteome Research, June 2026, American Chemical Society (ACS)

    Dr Magnus Palmblad

  4. Instrument-Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods

    Article • June 2026, American Chemical Society (ACS)

    Dr Magnus Palmblad

  5. Hardware Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods

    Article • April 2026, American Chemical Society (ACS)

    Dr Magnus Palmblad

  6. Hardware Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods

    Article • February 2026, American Chemical Society (ACS)

    Dr Magnus Palmblad

  7. Bidirectional bridge: GitHub ⇄ bio.tools

    Article • February 2026, Center for Open Science

    Dr Magnus Palmblad

  8. Semantic Annotation of Glycomics and Glycoproteomics Methods

    Article • Glycobiology, October 2025, Oxford University Press (OUP)

    Dr Magnus Palmblad

  9. Brief Evaluation of Olink Reveal Proximity Extension Assay for High-Throughput Proteomics: A Case Study Using NIST SRM 1950 and Two Spike-In Protein Standards

    Article • Journal of Proteome Research, September 2025, American Chemical Society (ACS)

    Dr Magnus Palmblad

  10. Evaluation of Olink Reveal Proximity Extension Assay for High-Throughput Proteomics: A Case Study Using NIST SRM 1950 and Spike-In Protein Standards

    Article • June 2025, American Chemical Society (ACS)

    Dr Magnus Palmblad

  11. Enhancing bio.tools by Semantic Literature Mining

    Article • May 2025, Center for Open Science

    Dr Magnus Palmblad

  12. Proteomic and Metabolomic Data Transparency

    Article • Journal of Proteome Research, May 2025, American Chemical Society (ACS)

    Dr Magnus Palmblad

  13. A Special Software Issue in Celebration of Margaret Dayhoff’s 100th Birthday

    Article • Journal of Proteome Research, March 2025, American Chemical Society (ACS)

    Dr Magnus Palmblad

  14. Proteomics for food and feed authentication in the circular food chain

    Article • Trends in Food Science & Technology, November 2024, Elsevier

    Dr Magnus Palmblad

  15. Text Mining and Computational Chemistry Reveal Trends in Applications of Laser Desorption/Ionization Techniques to Small Molecules

    Article • Journal of the American Society for Mass Spectrometry, September 2024, American Chemical Society (ACS)

    Dr Magnus Palmblad

  16. Quality Control in the Mass Spectrometry Proteomics Core: A Practical Primer

    Article • September 2024, Association of Biomolecular Resource Facilities

    Dr. Yasset Perez-Riverol, Dr Magnus Palmblad

  17. Fish species authentication in commercial fish products using mass spectrometry and spectral library matching approach

    Article • Food Research International, September 2024, Elsevier

    Dr Magnus Palmblad

  18. Quality Control in the Mass Spectrometry Proteomics Core: a Practical Primer

    Article • April 2024, American Chemical Society (ACS)

    Dr. Yasset Perez-Riverol, Dr Magnus Palmblad

  19. Tackling reproducibility: lessons for the proteomics community

    Article • Expert Review of Proteomics, February 2024, Taylor & Francis

    Dr Magnus Palmblad

  20. Benchmarks for Bioinformatics Workflow Bake Offs

    Article • January 2024, Center for Open Science

    Dr Magnus Palmblad

  21. WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

    Article • Journal of Proteome Research, December 2023, American Chemical Society (ACS)

    DR Juan Antonio Vizcaino, Dr Magnus Palmblad

  22. WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows

    Article • October 2023, openRxiv

    Dr Magnus Palmblad

  23. 2019 Association of Biomolecular Resource Facilities Multi-Laboratory Data-Independent Acquisition Proteomics Study

    Article • Journal of Biomolecular Techniques, June 2023, Association of Biomolecular Resource Facilities

    Dr Magnus Palmblad

  24. An evaluation of EDAM coverage in the Tools Ecosystem and prototype integration of Galaxy and WorkflowHub systems

    Article • February 2023, Center for Open Science

    Matúš Kalaš, Dr Ove J R Gustafsson, Dr Magnus Palmblad

  25. Toward an Integrated Machine Learning Model of a Proteomics Experiment

    Article • Journal of Proteome Research, February 2023, American Chemical Society (ACS)

    DR Juan Antonio Vizcaino, Dr Magnus Palmblad

  26. 2023 Special Issue on Software Tools and Resources: Accelerating Research with New and Evolving Open Source Software

    Article • Journal of Proteome Research, February 2023, American Chemical Society (ACS)

    Dr Magnus Palmblad

  27. Capillary electrophoresis - A bibliometric analysis

    Article • TrAC Trends in Analytical Chemistry, February 2023, Elsevier

    Dr Magnus Palmblad

  28. Text mining and computational chemistry reveal trends in applications and applicability of capillary electrophoresis

    Article • TrAC Trends in Analytical Chemistry, February 2023, Elsevier

    Dr Magnus Palmblad

  29. ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics

    Article • Journal of Proteome Research, January 2023, American Chemical Society (ACS)

    Dr. Yasset Perez-Riverol, DR Juan Antonio Vizcaino, Dr Magnus Palmblad

  30. Want to Publish in JPR? This Is What You Need to Know!

    Article • Journal of Proteome Research, November 2022, American Chemical Society (ACS)

    Dr Magnus Palmblad

  31. Large-Scale Interlaboratory DI-FT-ICR MS Comparability Study Employing Various Systems

    Article • Journal of the American Society for Mass Spectrometry, November 2022, American Chemical Society (ACS)

    Dr Magnus Palmblad

  32. Semantic Annotation of Experimental Methods in Analytical Chemistry

    Article • Analytical Chemistry, October 2022, American Chemical Society (ACS)

    Dr Magnus Palmblad

  33. Machine Learning in Proteomics and Metabolomics

    Article • Journal of Proteome Research, October 2022, American Chemical Society (ACS)

    Dr Magnus Palmblad

  34. compareMS2 2.0: An Improved Software for Comparing Tandem Mass Spectrometry Datasets

    Article • Journal of Proteome Research, September 2022, American Chemical Society (ACS)

    Dr Magnus Palmblad

  35. Identification of proteome markers for drug-induced liver injury in zebrafish embryos

    Article • Toxicology, July 2022, Elsevier

    Dr Magnus Palmblad

  36. Shotgun proteomics approaches for authentication, biological analyses, and allergen detection in feed and food-grade insect species

    Article • Food Control, July 2022, Elsevier

    Dr Magnus Palmblad

  37. Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics

    Article • Journal of Proteome Research, February 2022, American Chemical Society (ACS)

    Dr Magnus Palmblad

  38. Comparing novel shotgun DNA sequencing and state-of-the-art proteomics approaches for authentication of fish species in mixed samples

    Article • Food Control, January 2022, Elsevier

    Dr Magnus Palmblad

  39. Obituary

    Article • Journal of Mass Spectrometry and Advances in the Clinical Lab, November 2021, Stanford University Press

    Dr Magnus Palmblad

  40. Future feed control – Tracing banned bovine material in insect meal

    Article • Food Control, October 2021, Elsevier

    Dr Magnus Palmblad

  41. Rewinding the Molecular Clock: Looking at Pioneering Molecular Phylogenetics Experiments in the Light of Proteomics

    Article • Journal of Proteome Research, September 2021, American Chemical Society (ACS)

    Dr Magnus Palmblad

  42. Perspectives on automated composition of workflows in the life sciences

    Article • F1000Research, September 2021, Faculty of 1000, Ltd.

    Matúš Kalaš, Dr Magnus Palmblad

  43. Further Theoretical Considerations for Next-Generation Proteomics

    Article • June 2021, openRxiv

    Dr Magnus Palmblad

  44. Theoretical Considerations for Next-Generation Proteomics

    Article • Journal of Proteome Research, April 2021, American Chemical Society (ACS)

    Dr Magnus Palmblad

  45. 2021 Special Issue on Software Tools and Resources: Finding the Right Tools for the Job

    Article • Journal of Proteome Research, April 2021, American Chemical Society (ACS)

    Dr Magnus Palmblad

  46. APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry

    Article • Journal of Proteome Research, March 2021, American Chemical Society (ACS)

    Dr Magnus Palmblad

  47. mzRecal: universal MS1 recalibration in mzML using identified peptides in mzIdentML as internal calibrants

    Article • Bioinformatics, February 2021, Oxford University Press (OUP)

    Dr Magnus Palmblad

  48. Semiautomated glycoproteomics data analysis workflow for maximized glycopeptide identification and reliable quantification

    Article • Beilstein Journal of Organic Chemistry, December 2020, Beilstein Institut

    Dr Magnus Palmblad

  49. 2019 Association of Biomolecular Resource Facilities Multi-Laboratory Data-Independent Acquisition Study

    Article • November 2020, openRxiv

    Dr Magnus Palmblad

  50. Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project

    Article • Journal of Proteome Research, November 2020, American Chemical Society (ACS)

    Dr Magnus Palmblad

  51. A high-stringency blueprint of the human proteome

    Article • Nature Communications, October 2020, Springer Science + Business Media

    DR Juan Antonio Vizcaino, Dr Magnus Palmblad

  52. A Review of the Scientific Rigor, Reproducibility, and Transparency Studies Conducted by the ABRF Research Groups

    Article • Journal of Biomolecular Techniques, April 2020, Association of Biomolecular Resource Facilities

    Dr Magnus Palmblad

  53. Community curation of bioinformatics software and data resources

    Article • Briefings in Bioinformatics, October 2019, Oxford University Press (OUP)

    Dr John M Hancock, Matúš Kalaš, Dr Magnus Palmblad

  54. Isotopic Distributions

    Article • September 2019, Springer Science + Business Media

    Dr Magnus Palmblad

  55. Retention Time Prediction and Protein Identification

    Article • September 2019, Springer Science + Business Media

    Dr Magnus Palmblad

  56. Using the Object-Oriented PowerShell for Simple Proteomics Data Analysis

    Article • September 2019, Springer Science + Business Media

    Dr Magnus Palmblad

  57. One Thousand and One Software for Proteomics: Tales of the Toolmakers of Science

    Article • Journal of Proteome Research, August 2019, American Chemical Society (ACS)

    Dr Magnus Palmblad

  58. Species-Specific Discrimination of Insect Meals for Aquafeeds by Direct Comparison of Tandem Mass Spectra

    Article • Animals, May 2019, MDPI AG

    Dr Magnus Palmblad

  59. Palaeoproteomics of bird bones for taxonomic classification

    Article • Zoological Journal of the Linnean Society, April 2019, Oxford University Press (OUP)

    Dr Magnus Palmblad

  60. Visual and Semantic Enrichment of Analytical Chemistry Literature Searches by Combining Text Mining and Computational Chemistry

    Article • Analytical Chemistry, March 2019, American Chemical Society (ACS)

    Dr Magnus Palmblad

  61. Special Issue on Software Tools and Resources: Acknowledging the Toolmakers of Science

    Article • Journal of Proteome Research, February 2019, American Chemical Society (ACS)

    Dr Magnus Palmblad

  62. Automated Composition of Scientific Workflows in Mass Spectrometry-Based Proteomics

    Article • October 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Magnus Palmblad

  63. Semantically Enriched Literature Search Combining Text Mining, QSPR and Ontologies in Scientific Workflows

    Article • October 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Magnus Palmblad

  64. Visualization and application of amino acid retention coefficients obtained from modeling of peptide retention

    Article • Journal of Separation Science, September 2018, Wiley

    Dr Magnus Palmblad

  65. Automated workflow composition in mass spectrometry-based proteomics

    Article • Bioinformatics, July 2018, Oxford University Press (OUP)

    Dr Magnus Palmblad

  66. A protein standard that emulates homology for the characterization of protein inference algorithms

    Article • Journal of Proteome Research, April 2018, American Chemical Society (ACS)

    Dr Magnus Palmblad, Dr. Yasset Perez-Riverol

  67. Bibliometric Analyses Reveal Patterns of Collaboration between ASMS Members

    Article • Journal of the American Society for Mass Spectrometry, January 2018, Springer Science + Business Media

    Dr Magnus Palmblad

  68. A protein standard that emulates homology for the characterization of protein inference algorithms

    Article • December 2017, Cold Spring Harbor Laboratory Press

    Dr Magnus Palmblad, Dr. Yasset Perez-Riverol

  69. COMICS: Cartoon Visualization of Omics Data in Spatial Context Using Anatomical Ontologies

    Article • Journal of Proteome Research, November 2017, American Chemical Society (ACS)

    Dr Magnus Palmblad

  70. Spatiotemporal analysis of tropical disease research combining Europe PMC and affiliation mapping web services

    Article • Tropical Medicine and Health, October 2017, Springer Science + Business Media

    Dr Magnus Palmblad

  71. Multiplexed targeted proteomic assay to assess coagulation factor concentrations and thrombosis-associated cancer

    Article • Blood Advances, June 2017, American Society of Hematology

    Dr Magnus Palmblad

  72. A community proposal to integrate proteomics activities in ELIXIR

    Article • F1000Research, June 2017, Faculty of 1000, Ltd.

    Dr Magnus Palmblad, Mr Rafael C Jimenez, DR Juan Antonio Vizcaino, Peter Horvatovich, Lennart Martens, Albert Heck

  73. ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC–MS/MS Experiments

    Article • Journal of Proteome Research, January 2017, American Chemical Society (ACS)

    Dr Magnus Palmblad

  74. Human Dendritic Cells with Th2-Polarizing Capacity: Analysis Using Label-Free Quantitative Proteomics

    Article • International Archives of Allergy and Immunology, January 2017, Karger Publishers

    Dr Magnus Palmblad

  75. Visualizing and comparing results of different peptide identification methods

    Article • Briefings in Bioinformatics, December 2016, Oxford University Press (OUP)

    Dr Magnus Palmblad

  76. Autopiquer - a Robust and Reliable Peak Detection Algorithm for Mass Spectrometry

    Article • Journal of the American Society for Mass Spectrometry, December 2016, Springer Science + Business Media

    Dr Magnus Palmblad, Dr Robert Ernst

  77. A full-body transcriptome and proteome resource for the European common carp

    Article • BMC Genomics, September 2016, Springer Science + Business Media

    Dr Magnus Palmblad

  78. Species and tissues specific differentiation of processed animal proteins in aquafeeds using proteomics tools

    Article • Journal of Proteomics, September 2016, Elsevier

    Dr Magnus Palmblad

  79. Automating bibliometric analyses using Taverna scientific workflows: A tutorial on integrating Web Services

    Article • Journal of Informetrics, August 2016, Elsevier

    Dr Magnus Palmblad

  80. Identification of meat products by shotgun spectral matching

    Article • Food Chemistry, July 2016, Elsevier

    Dr Magnus Palmblad

  81. A Pipeline for Differential Proteomics in Unsequenced Species

    Article • Journal of Proteome Research, June 2016, American Chemical Society (ACS)

    Dr Magnus Palmblad

  82. Authentication of Closely Related Fish and Derived Fish Products Using Tandem Mass Spectrometry and Spectral Library Matching

    Article • Journal of Agricultural and Food Chemistry, May 2016, American Chemical Society (ACS)

    Dr Magnus Palmblad

  83. Scientific workflows for bibliometrics

    Article • Scientometrics, February 2016, Springer Science + Business Media

    Dr Magnus Palmblad

  84. Differentiating samples and experimental protocols by direct comparison of tandem mass spectra

    Article • Rapid Communications in Mass Spectrometry, February 2016, Wiley

    Dr Magnus Palmblad

  85. MassyTools: A High-Throughput Targeted Data Processing Tool for Relative Quantitation and Quality Control Developed for Glycomic and Glycoproteomic MALDI-MS

    Article • Journal of Proteome Research, December 2015, American Chemical Society (ACS)

    Dr Magnus Palmblad

  86. Developments in FTICR-MS and Its Potential for Body Fluid Signatures

    Article • International Journal of Molecular Sciences, November 2015, MDPI AG

    Dr Magnus Palmblad

  87. Scientific workflow optimization for improved peptide and protein identification

    Article • BMC Bioinformatics, September 2015, Springer Science + Business Media

    Dr Magnus Palmblad

  88. Bibliometric Mapping: Eight Decades of Analytical Chemistry, With Special Focus on the Use of Mass Spectrometry

    Article • Analytical Chemistry, May 2015, American Chemical Society (ACS)

    Dr Magnus Palmblad

  89. Assessing the translational landscape of myogenic differentiation by ribosome profiling

    Article • Nucleic Acids Research, April 2015, Oxford University Press (OUP)

    Dr Magnus Palmblad

  90. Top-Down MALDI-In-Source Decay-FTICR Mass Spectrometry of Isotopically Resolved Proteins

    Article • Analytical Chemistry, March 2015, American Chemical Society (ACS)

    Dr Magnus Palmblad

  91. ARA290 Improves Insulin Release and Glucose Tolerance in Type 2 Diabetic Goto-Kakizaki Rats

    Article • Extremophiles, January 2015, The Feinstein Institute for Medical Research (North Shore LIJ Research Institute)

    Dr Magnus Palmblad

  92. SPE-MALDI Profiling of Serum Peptides and Proteins by Ultrahigh Resolution FTICR-MS

    Article • Chromatographia, December 2014, Springer Science + Business Media

    Dr Magnus Palmblad

  93. A new optimization phase for scientific workflow management systems

    Article • Future Generation Computer Systems, July 2014, Elsevier

    Dr Magnus Palmblad

  94. Structural Analysis of an Intact Monoclonal Antibody by Online Electrochemical Reduction of Disulfide Bonds and Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

    Article • Analytical Chemistry, June 2014, American Chemical Society (ACS)

    Dr Magnus Palmblad

  95. PeptidePicker: A scientific workflow with web interface for selecting appropriate peptides for targeted proteomics experiments

    Article • Journal of Proteomics, June 2014, Elsevier

    Dr Magnus Palmblad

  96. Fibronectin is a serum biomarker for Duchenne muscular dystrophy

    Article • PROTEOMICS - CLINICAL APPLICATIONS, March 2014, Wiley

    Dr Magnus Palmblad

  97. Identifying Proteins in Zebrafish Embryos Using Spectral Libraries Generated from Dissected Adult Organs and Tissues

    Article • Journal of Proteome Research, March 2014, American Chemical Society (ACS)

    Dr Magnus Palmblad

  98. Authentication of Fish Products by Large-Scale Comparison of Tandem Mass Spectra

    Article • Journal of Proteome Research, November 2013, American Chemical Society (ACS)

    Dr Magnus Palmblad

  99. Enhanced Resource Management Enabling Standard Parameter Sweep Jobs for Scientific Applications

    Article • October 2013, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Magnus Palmblad

  100. Detection and Structural Elucidation of Esterified Oxylipids in Human Synovial Fluid by Electrospray Ionization-Fourier Transform Ion-Cyclotron Mass Spectrometry and Liquid Chromatography-Ion Trap-MS3: Detection of Esterified Hydroxylated Docosapentaen...

    Article • Analytical Chemistry, June 2013, American Chemical Society (ACS)

    Dr Magnus Palmblad

  101. Identification of genetic variants influencing the human plasma proteome

    Article • Proceedings of the National Academy of Sciences, March 2013, Proceedings of the National Academy of Sciences

    Dr Stefan Enroth, Dr Magnus Palmblad

  102. Comparison of peptide and protein fractionation methods in proteomics

    Article • EuPA Open Proteomics, January 2013, Elsevier

    Dr Magnus Palmblad

  103. Parallel deep transcriptome and proteome analysis of zebrafish larvae

    Article • BMC Research Notes, January 2013, Springer Science + Business Media

    Dr Magnus Palmblad

  104. Tandem mass spectrometry for species recognition and phenotyping in fish

    Article • January 2013, Wageningen Academic Publishers

    Dr Magnus Palmblad

  105. Use of expressed sequence tags as an alternative approach for the identification of Taenia solium metacestode excretion/secretion proteins

    Article • BMC Research Notes, January 2013, Springer Science + Business Media

    Dr Magnus Palmblad

  106. Isotopic Distributions

    Article • January 2013, Springer Science + Business Media

    Dr Magnus Palmblad

  107. Simple Proteomics Data Analysis in the Object-Oriented PowerShell

    Article • January 2013, Springer Science + Business Media

    Dr Magnus Palmblad

  108. Retention Time Prediction and Protein Identification

    Article • January 2013, Springer Science + Business Media

    Dr Magnus Palmblad

  109. Cloud Parallel Processing of Tandem Mass Spectrometry Based Proteomics Data

    Article • Journal of Proteome Research, October 2012, American Chemical Society (ACS)

    Dr Magnus Palmblad

  110. Proteomic analysis ofTaenia soliummetacestode excretion-secretion proteins

    Article • PROTEOMICS, June 2012, Wiley

    Dr Magnus Palmblad

  111. Scientific Workflow Management in Proteomics

    Article • Molecular & Cellular Proteomics, March 2012, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Magnus Palmblad

  112. Partially Sequenced Organisms, Decoy Searches and False Discovery Rates

    Article • Journal of Proteome Research, March 2012, American Chemical Society (ACS)

    Dr Magnus Palmblad

  113. Molecular phylogenetics by direct comparison of tandem mass spectra

    Article • Rapid Communications in Mass Spectrometry, February 2012, Wiley

    Dr Magnus Palmblad

  114. Fc specific IgG glycosylation profiling by robust nano-reverse phase HPLC-MS using a sheath-flow ESI sprayer interface

    Article • Journal of Proteomics, February 2012, Elsevier

    Dr Magnus Palmblad

  115. Protein Fractionation for Quantitative Plasma Proteomics by Semi-Selective Precipitation

    Article • Journal of Proteomics & Bioinformatics, January 2012, OMICS Publishing Group

    Dr Magnus Palmblad

  116. Data Decomposition in Biomedical e-Science Applications

    Article • December 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Magnus Palmblad

  117. Precision profiling and identification of human serum peptides using Fourier transform ion cyclotron resonance mass spectrometry

    Article • Rapid Communications in Mass Spectrometry, November 2011, Wiley

    Dr Magnus Palmblad

  118. P1.49 Mass spectrometry based clinical proteomics for biomarker discovery in Duchenne muscular dystrophy

    Article • Neuromuscular Disorders, October 2011, Elsevier

    Dr Magnus Palmblad

  119. Protein expression dynamics during Escherichia Coli glucose-lactose diauxie

    Article • BMC Microbiology, January 2011, Springer Science + Business Media

    Dr Magnus Palmblad

  120. Quality control based on isotopic distributions for high-throughput MALDI-TOF and MALDI-FTICR serum peptide profiling

    Article • Journal of the American Society for Mass Spectrometry, September 2010, Springer Science + Business Media

    Dr Magnus Palmblad

  121. Targeted proteomics approach to species-level identification of Bacillus thuringiensis spores by AP-MALDI-MS

    Article • Journal of the American Society for Mass Spectrometry, June 2010, Springer Science + Business Media

    Dr Magnus Palmblad

  122. A novel mass spectrometry cluster for high-throughput quantitative proteomics

    Article • Journal of the American Society for Mass Spectrometry, June 2010, Springer Science + Business Media

    Dr Magnus Palmblad

  123. Quantitative metabolism using AMS: Choosing a labeled precursor

    Article • Nuclear Instruments and Methods in Physics Research Section B Beam Interactions with Materials and Atoms, April 2010, Elsevier

    Dr Magnus Palmblad

  124. “Lossless” compression of high resolution mass spectra of small molecules

    Article • Metabolomics, March 2010, Springer Science + Business Media

    Dr Magnus Palmblad

  125. Immunoglobulin G Glycopeptide Profiling by Matrix-Assisted Laser Desorption Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

    Article • Analytical Chemistry, February 2010, American Chemical Society (ACS)

    Dr Magnus Palmblad

  126. High Resolution Mass Spectrometry for Rapid Characterization of Combinatorial Peptide Libraries

    Article • Journal of Combinatorial Chemistry, January 2010, American Chemical Society (ACS)

    Dr Magnus Palmblad

  127. Alignment of capillary electrophoresis–mass spectrometry datasets using accurate mass information

    Article • Analytical and Bioanalytical Chemistry, October 2009, Springer Science + Business Media

    Dr Magnus Palmblad

  128. Improving mass measurement accuracy in mass spectrometry based proteomics by combining open source tools for chromatographic alignment and internal calibration

    Article • Journal of Proteomics, May 2009, Elsevier

    Dr Magnus Palmblad

  129. Electron capture dissociation of peptide hormone changes upon opening of the tocin ring and complexation with transition metal cations

    Article • Rapid Communications in Mass Spectrometry, January 2009, Wiley

    Dr Magnus Palmblad

  130. Mass spectrometry in clinical proteomics - from the present to the future

    Article • PROTEOMICS - CLINICAL APPLICATIONS, January 2009, Wiley

    Dr Magnus Palmblad, Ali Tiss

  131. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study

    Article • Phytochemistry, July 2008, Elsevier

    Dr Magnus Palmblad

  132. Heat-Shock Response inArabidopsis thalianaExplored by Multiplexed Quantitative Proteomics Using Differential Metabolic Labeling

    Article • Journal of Proteome Research, February 2008, American Chemical Society (ACS)

    Dr Magnus Palmblad

  133. Chromatographic alignment of LC-MS and LC-MS/MS datasets by genetic algorithm feature extraction

    Article • Journal of the American Society for Mass Spectrometry, October 2007, Springer Science + Business Media

    Dr Magnus Palmblad

  134. Quantitative proteomics using uniform15N-labeling, MASCOT, and the trans-proteomic pipeline

    Article • PROTEOMICS, October 2007, Wiley

    Dr Magnus Palmblad

  135. Biochemical paths in humans and cells: Frontiers of AMS bioanalysis

    Article • Nuclear Instruments and Methods in Physics Research Section B Beam Interactions with Materials and Atoms, June 2007, Elsevier

    Dr Magnus Palmblad

  136. Liquid matrix deposition on conductive hydrophobic surfaces for tuning and quantitation in UV-MALDI mass spectrometry

    Article • Journal of the American Society for Mass Spectrometry, April 2007, Springer Science + Business Media

    Dr Magnus Palmblad

  137. Quantitative proteomics of Arabidopsis plants submitted to oxidative stress

    Article • Comparative Biochemistry and Physiology Part A Molecular & Integrative Physiology, April 2007, Elsevier

    Dr Magnus Palmblad

  138. Automatic internal calibration in liquid chromatography/Fourier transform ion cyclotron resonance mass spectrometry of protein digests

    Article • Rapid Communications in Mass Spectrometry, January 2006, Wiley

    Dr Magnus Palmblad

  139. Mass by Energy Loss Quantitation as a Practical Submicrogram Balance

    Article • Analytical Chemistry, February 2005, American Chemical Society (ACS)

    Dr Magnus Palmblad

  140. Quantitation of binding, recovery and desalting efficiency of peptides and proteins in solid phase extraction micropipette tips

    Article • Journal of Chromatography B, January 2005, Elsevier

    Dr Magnus Palmblad

  141. Neuroscience and accelerator mass spectrometry

    Article • Journal of Mass Spectrometry, January 2005, Wiley

    Dr Magnus Palmblad

  142. Explorative Study of the Protein Composition of Amniotic Fluid by Liquid Chromatography Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

    Article • Journal of Proteome Research, August 2004, American Chemical Society (ACS)

    Dr Magnus Palmblad

  143. Protein identification by liquid chromatography–mass spectrometry using retention time prediction

    Article • Journal of Chromatography B, April 2004, Elsevier

    Dr Magnus Palmblad

  144. Accelerator Mass Spectrometry in Protein Analysis

    Article • January 2004, Springer Science + Business Media

    Dr Magnus Palmblad

  145. Counting Statistics and Ion Interval Density in AMS

    Article • Radiocarbon, January 2004, Cambridge University Press

    Dr Magnus Palmblad

  146. α-Particle Energy Loss Measurement of Microgram Depositions of Biomolecules

    Article • Analytical Chemistry, September 2003, American Chemical Society (ACS)

    Dr Magnus Palmblad

  147. Electron Donor−Acceptor Dyads Based on Ruthenium(II) Bipyridine and Terpyridine Complexes Bound to Naphthalenediimide

    Article • Inorganic Chemistry, May 2003, American Chemical Society (ACS)

    Dr Magnus Palmblad

  148. Protein identification in cerebrospinal fluid using packed capillary liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry

    Article • PROTEOMICS, February 2003, Wiley

    Dr Magnus Palmblad

  149. Investigation of Lignin Oligomers Using Electrospray Ionisation Mass Spectrometry

    Article • Holzforschung, January 2003, De Gruyter

    Dr Magnus Palmblad

  150. Identification and Characterization of Peptides and Proteins Using Fourier Transform Ion Cyclotron Resonance Mass Spectrometry

    Article • January 2003, Elsevier

    Dr Magnus Palmblad

  151. Prediction of Chromatographic Retention and Protein Identification in Liquid Chromatography/Mass Spectrometry

    Article • Analytical Chemistry, November 2002, American Chemical Society (ACS)

    Dr Magnus Palmblad

  152. Rapid Analysis of Tryptically Digested Cerebrospinal Fluid Using Capillary Electrophoresis−Electrospray Ionization−Fourier Transform Ion Cyclotron Resonance−Mass Spectrometry

    Article • Journal of Proteome Research, August 2002, American Chemical Society (ACS)

    Dr Magnus Palmblad

  153. Liquid chromatography and electron-capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry

    Article • Rapid Communications in Mass Spectrometry, April 2002, Wiley

    Dr Magnus Palmblad

  154. Oxidation of Methionine 35 Attenuates Formation of Amyloid beta -Peptide 1-40 Oligomers

    Article • Journal of Biological Chemistry, March 2002, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Magnus Palmblad

  155. Peptide mapping of proteins in human body fluids using electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry

    Article • Mass Spectrometry Reviews, January 2002, Wiley

    Dr Magnus Palmblad

  156. Automatic analysis of hydrogen/deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions

    Article • Journal of the American Society for Mass Spectrometry, November 2001, Springer Science + Business Media

    Dr Magnus Palmblad

  157. Mechanistic studies of multipole storage assisted dissociation

    Article • Journal of the American Society for Mass Spectrometry, March 2000, Springer Science + Business Media

    Dr Magnus Palmblad

  158. A 9.4 T Fourier transform ion cyclotron resonance mass spectrometer: description and performance

    Article • European Journal of Mass Spectrometry, January 2000, IM Publications

    Dr Magnus Palmblad

  159. Analysis of enzymatically digested proteins and protein mixtures using a 9.4 Tesla Fourier transform ion cyclotron mass spectrometer

    Article • Rapid Communications in Mass Spectrometry, January 2000, Wiley

    Dr Magnus Palmblad

  160. A method to significantly lessen the sample contamination of the vacuum interface of an on-axis electrospray ion source by adding a mechanical shutter

    Article • Rapid Communications in Mass Spectrometry, July 1999, Wiley

    Dr Magnus Palmblad

  161. Electron capture dissociation of substance P using a commercially available Fourier transform ion cyclotron resonance mass spectrometer

    Article • Rapid Communications in Mass Spectrometry, March 1999, Wiley

    Dr Magnus Palmblad

  162. Retention Time Prediction and Protein Identification

    Article • Springer Science + Business Media

    Dr Magnus Palmblad

  163. Integrating publications into bioinformatics analysis

    Article • EMBL-EBI

    Dr Magnus Palmblad