All Stories

  1. CASH3D: Color-aware 3D Multimodal Hypergraph Learning for Revealing Biologically Meaningful Tissue Organization

    Article • August 2026, ACM (Association for Computing Machinery)

    Luonan Chen

  2. Diffusive topology preserving manifold distances for single-cell data analysis

    Article • Proceedings of the National Academy of Sciences, January 2025, Proceedings of the National Academy of Sciences

    Luonan Chen

  3. Alerting for possible earthquakes from real-time observations

    Article • Proceedings of the National Academy of Sciences, September 2023, Proceedings of the National Academy of Sciences

    Luonan Chen

  4. Quantifying Direct Dependencies in Biological Networks by Multiscale Association Analysis

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, March 2020, Institute of Electrical & Electronics Engineers (IEEE)

    Luonan Chen

  5. Different effects of fast and slow input fluctuations on output in gene regulation

    Article • Chaos An Interdisciplinary Journal of Nonlinear Science, February 2020, American Institute of Physics

    Luonan Chen

  6. A novel network control model for identifying personalized driver genes in cancer

    Article • PLoS Computational Biology, November 2019, PLOS

    Shaowu Zhang, Luonan Chen

  7. Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process

    Article • PLoS Computational Biology, November 2019, PLOS

    Luonan Chen

  8. A branch point on differentiation trajectory is the bifurcating event revealed by dynamical network biomarker analysis of single-cell data

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, January 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Luonan Chen

  9. The effects of graded levels of calorie restriction: IX. Global metabolomic screen reveals modulation of carnitines, sphingolipids and bile acids in the liver of C57BL/6 mice

    Article • Aging Cell, January 2017, Wiley

    Dr Cara L Green, ms Davina Derous, Professor John Speakman, Daniel Promislow, Luonan Chen

  10. Prediction and Dissection of Protein-RNA Interactions by Molecular Descriptors

    Article • Current Topics in Medicinal Chemistry, November 2015, Bentham Science Publishers

    Luonan Chen

  11. MCentridFS: a tool for identifying module biomarkers for multi-phenotypes from high-throughput data

    Article • Molecular BioSystems, July 2014, Royal Society of Chemistry

    Luonan Chen