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All Stories

  1. BioChef: A Client-Side WebAssembly-Based Workflow Builder for Genomic Data Analysis

    Article • October 2025, Springer Science + Business Media

    Dr. Jorge Miguel Silva

  2. How Can We Train AI Models Together Without Sharing Patient Data

    Article • June 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jorge Miguel Silva

  3. PhenoQC: fast quality checks for clinical phenotype tables in genomic research

    Article • Informatics in Medicine Unlocked, January 2025, Elsevier

    Dr. Jorge Miguel Silva

  4. Using Data Compression to Classify DNA: A Faster, Smarter Way to Identify Organisms

    Article • Artificial Intelligence in Medicine, October 2024, Elsevier

    Dr. Jorge Miguel Silva

  5. A comprehensive study of databases to assess the reliability of metagenomic tools

    Article • August 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jorge Miguel Silva

  6. HealthDBFinder: a question-answering task for health database discovery

    Article • June 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jorge Miguel Silva

  7. AltaiR: A Powerful Tool for Analyzing Large-Scale Genome Data Without Alignments

    Article • GigaScience, January 2024, Oxford University Press (OUP)

    Dr. Jorge Miguel Silva

  8. A FAIR Approach to Real-World Health Data Management and Analysis

    Article • June 2023, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jorge Miguel Silva

  9. SecureFASTA: Ensuring privacy and trust when sharing genomic data

    Article • June 2023, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jorge Miguel Silva

  10. A Reliable and Secure Method for Sharing Genomic Data

    Article • May 2023, IOS Press

    Dr. Jorge Miguel Silva

  11. AlcoR: A User-Friendly Tool to Identify and Visualize Low-Complexity Regions in Genomic Sequences

    Article • April 2023, Cold Spring Harbor Laboratory Press

    Dr. Jorge Miguel Silva

  12. Classifying and discovering genomic sequences in metagenomic repositories

    Article • Procedia Computer Science, January 2023, Elsevier

    Dr. Jorge Miguel Silva

  13. Exploring Kolmogorov Complexity Approximations for Data Analysis: Insights and Applications

    Article • January 2023, Springer Science + Business Media

    Dr. Jorge Miguel Silva

  14. Optimizing Variant Calling for Human Genome Analysis: A Comprehensive Pipeline Approach

    Article • January 2023, Springer Science + Business Media

    Dr. Jorge Miguel Silva

  15. AlcoR: A User-Friendly Tool to Identify and Visualize Low-Complexity Regions in Genomic Sequences

    Article • GigaScience, December 2022, Oxford University Press (OUP)

    Dr. Jorge Miguel Silva

  16. A New Approach to Organizing Genetic Material in Environmental Samples

    Article • August 2022, IOS Press

    Dr. Jorge Miguel Silva, João Rafael Almeida

  17. Using compression to improve taxonomic identification of unknown organisms

    Article • July 2022, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jorge Miguel Silva, João Rafael Almeida

  18. Studying the Complexity Landscape of Viruses

    Article • GigaScience, January 2022, Oxford University Press (OUP)

    Dr. Jorge Miguel Silva, Dr. Diogo Pratas

  19. Identifying Archaea using Compression and Genomic Sequences

    Article • January 2022, Springer Science + Business Media

    Dr. Jorge Miguel Silva, Dr. Diogo Pratas

  20. Automating Artistic Painting Analysis with Information-Based Measures

    Article • Pattern Recognition, June 2021, Elsevier

    Dr. Jorge Miguel Silva, Rui Antunes, Dr. Diogo Pratas

  21. A new method that shows the presence of short persistent DNA/RNA sequences in SARS-CoV-2

    Article • Bioinformatics, July 2020, Oxford University Press (OUP)

    Dr. Jorge Miguel Silva, Dr. Diogo Pratas

  22. Improving Medical Education and Research with the Dicoogle Framework

    Article • July 2020, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jorge Miguel Silva

  23. Uncovering patterns in Turing machine tapes

    Article • Entropy, January 2020, MDPI AG

    Dr. Jorge Miguel Silva, Dr. Diogo Pratas

  24. Enhancing DNA Sequence Compression with a Novel Weighted Model Method

    Article • Entropy, November 2019, MDPI AG

    Dr. Jorge Miguel Silva, Dr. Diogo Pratas

  25. Web-based DICOM Validation Service for Improved Medical Imaging Interoperability

    Article • Computer Standards & Interfaces, January 2019, Elsevier

    Dr. Jorge Miguel Silva

  26. Revolutionizing Diabetic Retinopathy Detection with a Collaborative Platform

    Article • International Journal of Medical Informatics, December 2018, Elsevier

    Dr. Jorge Miguel Silva

  27. Automating Heart Function Classification using AI in TTE Exams

    Article • June 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jorge Miguel Silva

  28. Ensuring Patient Privacy in Neuroimaging Studies: A Facial De-Identification Service

    Article • June 2018, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Jorge Miguel Silva

  29. Secure and Searchable Medical Imaging for Sharing and Research

    Article • Journal of Biomedical Informatics, January 2018, Elsevier

    Dr. Jorge Miguel Silva

  30. Opinionated Framework for Building Reactive Services for Web Development

    Article • January 2018, Scitepress

    Dr. Jorge Miguel Silva

  31. SCREEN-DR

    Article • January 2018, IOS Press

    Dr. Jorge Miguel Silva

  32. Web Validation Service for Ensuring Adherence to the DICOM Standard

    Article • January 2017, IOS Press

    Dr. Jorge Miguel Silva