All Stories

  1. Induction of human trophoblast stem-like cells from primed pluripotent stem cells

    Article • Proceedings of the National Academy of Sciences, May 2022, Proceedings of the National Academy of Sciences

    Jonghwan Kim

  2. The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer

    Article • Nature Communications, March 2021, Springer Science + Business Media

    Jonghwan Kim

  3. Conserved dual-mode gene regulation programs in higher eukaryotes

    Article • Nucleic Acids Research, February 2021, Oxford University Press (OUP)

    Jonghwan Kim

  4. Context-dependent roles of YAP/TAZ in stem cell fates and cancer

    Article • Cellular and Molecular Life Sciences, February 2021, Springer Science + Business Media

    Jonghwan Kim

  5. Mechanobiological conditioning of mesenchymal stem cells for enhanced vascular regeneration

    Article • Nature Biomedical Engineering, January 2021, Springer Science + Business Media

    Jonghwan Kim

  6. Super-enhancer-guided mapping of regulatory networks controlling mouse trophoblast stem cells

    Article • Nature Communications, October 2019, Springer Science + Business Media

    Jonghwan Kim

  7. Systematic Discovery of Endogenous Human Ribonucleoprotein Complexes

    Article • Cell Reports, October 2019, Elsevier

    Jonghwan Kim

  8. TAF5L and TAF6L Maintain Self-Renewal of Embryonic Stem Cells via the MYC Regulatory Network

    Article • Molecular Cell, June 2019, Elsevier

    Jonghwan Kim

  9. Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation

    Article • eLife, December 2018, eLife

    Jonghwan Kim

  10. miRNA-mediated TUSC3 deficiency enhances UPR and ERAD to promote metastatic potential of NSCLC

    Article • Nature Communications, November 2018, Springer Science + Business Media

    Jonghwan Kim

  11. Tumor penetrating peptides inhibiting MYC as a potent targeted therapeutic strategy for triple-negative breast cancers

    Article • Oncogene, August 2018, Springer Science + Business Media

    Jonghwan Kim

  12. Homeodomain Proteins Directly Regulate ATM Kinase Activity

    Article • Cell Reports, August 2018, Elsevier

    Jonghwan Kim

  13. Uhrf1 regulates active transcriptional marks at bivalent domains in pluripotent stem cells through Setd1a

    Article • Nature Communications, July 2018, Springer Science + Business Media

    Dr gareth John sullivan, Jonghwan Kim

  14. Implications of CpG islands on chromosomal architectures and modes of global gene regulation

    Article • Nucleic Acids Research, February 2018, Oxford University Press (OUP)

    Jonghwan Kim

  15. Fosl1 overexpression directly activates trophoblast-specific gene expression programs in embryonic stem cells

    Article • Stem Cell Research, January 2018, Elsevier

    Jonghwan Kim

  16. ZSCAN10 expression corrects the genomic instability of iPSCs from aged donors

    Article • Nature Cell Biology, August 2017, Springer Science + Business Media

    Jonghwan Kim

  17. Mechanisms of transcription factor-mediated direct reprogramming of mouse embryonic stem cells to trophoblast stem-like cells

    Article • Nucleic Acids Research, August 2017, Oxford University Press (OUP)

    Jonghwan Kim

  18. Ethylene induces combinatorial effects of histone H3 acetylation in gene expression in Arabidopsis

    Article • BMC Genomics, July 2017, Springer Science + Business Media

    Jonghwan Kim

  19. Fbxl19 recruitment to CpG islands is required for Rnf20-mediated H2B mono-ubiquitination

    Article • Nucleic Acids Research, April 2017, Oxford University Press (OUP)

    Jonghwan Kim

  20. ARID3A is required for mammalian placenta development

    Article • Developmental Biology, February 2017, Elsevier

    Jonghwan Kim

  21. BMI1–UBR5 axis regulates transcriptional repression at damaged chromatin

    Article • Proceedings of the National Academy of Sciences, September 2016, Proceedings of the National Academy of Sciences

    Jonghwan Kim

  22. Pathogen Infection and MORC Proteins Affect Chromatin Accessibility of Transposable Elements and Expression of Their Proximal Genes in Arabidopsis

    Article • Molecular Plant-Microbe Interactions, September 2016, Scientific Societies

    Jonghwan Kim

  23. Yap1 is dispensable for self‐renewal but required for proper differentiation of mouse embryonic stem ( ES ) cells

    Article • EMBO Reports, February 2016, EMBO

    Jonghwan Kim

  24. Serine/Threonine Kinase MLK4 Determines Mesenchymal Identity in Glioma Stem Cells in an NF-κB-dependent Manner

    Article • Cancer Cell, February 2016, Elsevier

    Jonghwan Kim

  25. The Pluripotency Factor NANOG Binds to GLI Proteins and Represses Hedgehog-mediated Transcription

    Article • Journal of Biological Chemistry, January 2016, American Society for Biochemistry & Molecular Biology (ASBMB)

    zhicheng ji, Jonghwan Kim

  26. An Immunofluorescence-Assisted Microfluidic Single Cell Quantitative Reverse Transcription Polymerase Chain Reaction Analysis of Tumour Cells Separated from Blood

    Article • Journal of Circulating Biomarkers, November 2015, Aboutscience Srl

    Jonghwan Kim

  27. Tgif1 Counterbalances the Activity of Core Pluripotency Factors in Mouse Embryonic Stem Cells

    Article • Cell Reports, October 2015, Elsevier

    Jonghwan Kim

  28. PRC2 Is Required to Maintain Expression of the Maternal Gtl2-Rian-Mirg Locus by Preventing De Novo DNA Methylation in Mouse Embryonic Stem Cells

    Article • Cell Reports, September 2015, Elsevier

    Jonghwan Kim

  29. CpG island-mediated global gene regulatory modes in mouse embryonic stem cells

    Article • Nature Communications, November 2014, Springer Science + Business Media

    Jonghwan Kim

  30. Arid3a is essential to execution of the first cell fate decision via direct embryonic and extraembryonic transcriptional regulation

    Article • Genes & Development, October 2014, Cold Spring Harbor Laboratory Press

    Jonghwan Kim

  31. Global Transcriptional Profiling Reveals Distinct Functions of Thymic Stromal Subsets and Age-Related Changes during Thymic Involution

    Article • Cell Reports, October 2014, Elsevier

    Jonghwan Kim

  32. Multi-layered global gene regulation in mouse embryonic stem cells

    Article • Cellular and Molecular Life Sciences, September 2014, Springer Science + Business Media

    Jonghwan Kim

  33. Staufen1-mediated mRNA decay induces Requiem mRNA decay through binding of Staufen1 to the Requiem 3'UTR

    Article • Nucleic Acids Research, May 2014, Oxford University Press (OUP)

    Jonghwan Kim

  34. Distinct and Combinatorial Functions of Jmjd2b/Kdm4b and Jmjd2c/Kdm4c in Mouse Embryonic Stem Cell Identity

    Article • Molecular Cell, January 2014, Elsevier

    Jonghwan Kim

  35. Splicing factor SRSF3 represses the translation of programmed cell death 4 mRNA by associating with the 5′-UTR region

    Article • Cell Death and Differentiation, November 2013, Springer Science + Business Media

    Jonghwan Kim

  36. Developmental differences in IFN signaling affect GATA1s-induced megakaryocyte hyperproliferation

    Article • Journal of Clinical Investigation, July 2013, American Society for Clinical Investigation

    Jonghwan Kim

  37. ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients

    Article • Genes & Development, March 2013, Cold Spring Harbor Laboratory Press

    Jonghwan Kim

  38. Surfactant Protein–C Chromatin-Bound Green Fluorescence Protein Reporter Mice Reveal Heterogeneity of Surfactant Protein C–Expressing Lung Cells

    Article • American Journal of Respiratory Cell and Molecular Biology, March 2013, American Thoracic Society

    Juliana Barrios, Carla Kim, Jonghwan Kim

  39. Transcription Elongation Factor Tcea3 Regulates the Pluripotent Differentiation Potential of Mouse Embryonic Stem Cells Via the Lefty1 ‐Nodal‐Smad2 Pathway

    Article • Stem Cells, February 2013, Oxford University Press (OUP)

    Jonghwan Kim

  40. The Response of the Prostate to Circulating Cholesterol: Activating Transcription Factor 3 (ATF3) as a Prominent Node in a Cholesterol-Sensing Network

    Article • PLoS ONE, July 2012, PLOS

    Jonghwan Kim

  41. Role of ZBP-89 in human globin gene regulation and erythroid differentiation

    Article • Blood, September 2011, American Society of Hematology

    Jonghwan Kim

  42. Embryonic stem cell-specific signatures in cancer: insights into genomic regulatory networks and implications for medicine

    Article • Genome Medicine, January 2011, Springer Science + Business Media

    Jonghwan Kim

  43. A Myc Network Accounts for Similarities between Embryonic Stem and Cancer Cell Transcription Programs

    Article • Cell, October 2010, Elsevier

    Jonghwan Kim

  44. Sumoylation Regulates Interaction of FOG1 with C-terminal-binding Protein (CTBP)

    Article • Journal of Biological Chemistry, September 2010, Elsevier

    Jonghwan Kim

  45. Epigenetic memory in induced pluripotent stem cells

    Article • Nature, July 2010, Springer Science + Business Media

    Jonghwan Kim

  46. TIF1γ Controls Erythroid Cell Fate by Regulating Transcription Elongation

    Article • Cell, July 2010, Elsevier

    Jonghwan Kim

  47. Systematic tracking of cell fate changes

    Article • Nature Biotechnology, February 2010, Springer Science + Business Media

    Jonghwan Kim

  48. DNA Methyltransferase 1 Is Essential for and Uniquely Regulates Hematopoietic Stem and Progenitor Cells

    Article • Cell Stem Cell, October 2009, Elsevier

    Jonghwan Kim

  49. A genome-wide RNAi screen identifies a new transcriptional module required for self-renewal

    Article • Genes & Development, April 2009, Cold Spring Harbor Laboratory Press

    Jonghwan Kim

  50. Use of in vivo biotinylation to study protein–protein and protein–DNA interactions in mouse embryonic stem cells

    Article • Nature Protocols, March 2009, Springer Science + Business Media

    Jonghwan Kim

  51. EZH1 Mediates Methylation on Histone H3 Lysine 27 and Complements EZH2 in Maintaining Stem Cell Identity and Executing Pluripotency

    Article • Molecular Cell, November 2008, Elsevier

    Jonghwan Kim

  52. Global Identification of Myc Target Genes Reveals Its Direct Role in Mitochondrial Biogenesis and Its E-Box Usage In Vivo

    Article • PLoS ONE, March 2008, PLOS

    Jonghwan Kim

  53. An Extended Transcriptional Network for Pluripotency of Embryonic Stem Cells

    Article • Cell, March 2008, Elsevier

    Jonghwan Kim

  54. The Transcriptional Network Controlling Pluripotency in ES Cells

    Article • Cold Spring Harbor Symposia on Quantitative Biology, January 2008, Cold Spring Harbor Laboratory Press

    Jonghwan Kim

  55. Epigenetic Regulation of Hematopoietic Differentiation by Gfi-1 and Gfi-1b Is Mediated by the Cofactors CoREST and LSD1

    Article • Molecular Cell, August 2007, Elsevier

    Jonghwan Kim

  56. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

    Article • Nature, June 2007, Nature

    Dr Stefan Enroth, Piero Carninci, Sean Davis, Jonghwan Kim

  57. Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE)

    Article • Genome Research, June 2007, Cold Spring Harbor Laboratory Press

    Jonghwan Kim

  58. FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

    Article • Genome Research, December 2006, Cold Spring Harbor Laboratory Press

    Jonghwan Kim

  59. Identifying Chromosomal Targets of DNA‐Binding Proteins by Sequence Tag Analysis of Genomic Enrichment (STAGE)

    Article • Current Protocols in Molecular Biology, October 2005, Wiley

    Jonghwan Kim

  60. Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment

    Article • Nature Methods, December 2004, Springer Science + Business Media

    Jonghwan Kim

  61. Global Role of TATA Box-Binding Protein Recruitment to Promoters in Mediating Gene Expression Profiles

    Article • Molecular and Cellular Biology, September 2004, ASM Journals

    Jonghwan Kim