All Stories

  1. Re-Assembly and Analysis of an Ancient Variola Virus Genome

    Article • Viruses, September 2017, MDPI AG

    Dr Chris Upton

  2. Two novel poxviruses with unusual genome rearrangements: NY_014 and Murmansk

    Article • Virus Genes, July 2017, Springer Science + Business Media

    Dr Chris Upton

  3. Characterization of Eptesipoxvirus, a novel poxvirus from a microchiropteran bat

    Article • Virus Genes, July 2017, Springer Science + Business Media

    Dr Chris Upton

  4. The genomes of three North American orthopoxviruses

    Article • Virus Genes, September 2016, Springer Science + Business Media

    Dr Chris Upton

  5. Genome sequence and comparative virulence of raccoonpox virus: the first North American poxvirus sequence

    Article • Journal of General Virology, September 2015, Society for General Microbiology

    Dr Chris Upton, Dr. Rachel Roper

  6. Novel Poxvirus Infection in an Immune Suppressed Patient

    Article • Clinical Infectious Diseases, August 2015, Oxford University Press (OUP)

    Dr Chris Upton

  7. Comparative analysis of the complete genome sequences of Kenyan African swine fever virus isolates within p72 genotypes IX and X

    Article • Virus Genes, February 2015, Springer Science + Business Media

    Dr Chris Upton

  8. Related strains of African swine fever virus with different virulence: genome comparison and analysis

    Article • Journal of General Virology, November 2014, Society for General Microbiology

    Dr Chris Upton

  9. Incongruencies in Vaccinia Virus Phylogenetic Trees

    Article • Computation, October 2014, MDPI AG

    Dr Chris Upton

  10. Prediction of Steps in the Evolution of Variola Virus Host Range

    Article • PLoS ONE, March 2014, PLOS

    Dr Chris Upton

  11. Suffix tree searcher: exploration of common substrings in large DNA sequence sets

    Article • BMC Research Notes, January 2014, Springer Science + Business Media

    Dr Chris Upton

  12. Expression of a non-coding RNA in ectromelia virus is required for normal plaque formation

    Article • Virus Genes, September 2013, Springer Science + Business Media

    Dr Chris Upton

  13. African swine fever virus replication and genomics

    Article • Virus Research, April 2013, Elsevier

    Dr Chris Upton, Dr Linda K Dixon

  14. Paramecium bursaria Chlorella Virus 1 Proteome Reveals Novel Architectural and Regulatory Features of a Giant Virus

    Article • Journal of Virology, June 2012, ASM Journals

    Dr Chris Upton

  15. Bioinformatics for Analysis of Poxvirus Genomes

    Article • January 2012, Springer Science + Business Media

    Dr Chris Upton

  16. Genomic Analysis of the Vaccinia Virus Strain Variants Found in Dryvax Vaccine

    Article • Journal of Virology, October 2011, ASM Journals

    Dr Chris Upton

  17. It's a small world after all—viral genomics and the global dominance of viruses

    Article • Current Opinion in Virology, October 2011, Elsevier

    Professor Elodie Ghedin, Dr Chris Upton

  18. The Genome of Yoka Poxvirus

    Article • Journal of Virology, August 2011, ASM Journals

    Dr Chris Upton

  19. Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus

    Article • Emerging Infectious Diseases, April 2011, Centers for Disease Control and Prevention (CDC)

    Dr Alistair C Darby, Dr Chris Upton, Dr Alistair C Darby

  20. Prediction of a novel RNA binding domain in crocodilepox Zimbabwe Gene 157

    Article • Microbial Informatics and Experimentation, January 2011, Springer Science + Business Media

    Dr Chris Upton

  21. Base-By-Base version 2: single nucleotide-level analysis of whole viral genome alignments

    Article • Microbial Informatics and Experimentation, January 2011, Springer Science + Business Media

    Dr Chris Upton

  22. Characterization of indels in poxvirus genomes

    Article • Virus Genes, December 2010, Springer Science + Business Media

    Dr Chris Upton

  23. JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences

    Article • Viruses, August 2010, MDPI AG

    Dr Chris Upton

  24. Vaccinia Virus–Encoded Ribonucleotide Reductase Subunits Are Differentially Required for Replication and Pathogenesis

    Article • PLoS Pathogens, July 2010, PLOS

    Dr Chris Upton

  25. Vaccinia Virus G8R Protein: A Structural Ortholog of Proliferating Cell Nuclear Antigen (PCNA)

    Article • PLoS ONE, May 2009, PLOS

    Dr Chris Upton

  26. Sequence Searcher: A Java tool to perform regular expression and fuzzy searches of multiple DNA and protein sequences

    Article • BMC Research Notes, January 2009, Springer Science + Business Media

    Dr Chris Upton

  27. KISSa: a strategy to build multiple sequence alignments from pairwise comparisons of very closely related sequences

    Article • BMC Research Notes, January 2009, Springer Science + Business Media

    Dr Chris Upton

  28. Evidence for a novel gene associated with human influenza A viruses

    Article • Virology Journal, January 2009, Springer Science + Business Media

    Dr Chris Upton

  29. Comparison of the genome sequences of non-pathogenic and pathogenic African swine fever virus isolates

    Article • Journal of General Virology, February 2008, Society for General Microbiology

    Dr Chris Upton, Dr Linda K Dixon

  30. Genomic differences of Vaccinia virus clones from Dryvax smallpox vaccine: The Dryvax-like ACAM2000 and the mouse neurovirulent Clone-3

    Article • Vaccine, December 2007, Elsevier

    Dr Chris Upton, Dr. Rachel Roper

  31. Role of phages in the pathogenesis of Burkholderia, or ‘Where are the toxin genes in Burkholderia phages?’

    Article • Current Opinion in Microbiology, August 2007, Elsevier

    Dr Chris Upton

  32. Article • BMC Bioinformatics, January 2007, Springer Science + Business Media

    Dr Chris Upton

  33. Article • Virology Journal, January 2007, Springer Science + Business Media

    Dr Chris Upton

  34. An ectromelia virus profilin homolog interacts with cellular tropomyosin and viral A-type inclusion protein

    Article • Virology Journal, January 2007, Springer Science + Business Media

    Dr Chris Upton

  35. Predicted function of the vaccinia virus G5R protein

    Article • Bioinformatics, October 2006, Oxford University Press (OUP)

    Dr Chris Upton

  36. Poxviruses: past, present and future

    Article • Virus Research, April 2006, Elsevier

    Dr Chris Upton

  37. Article • BMC Bioinformatics, January 2006, Springer Science + Business Media

    Dr Chris Upton

  38. Article • Virology Journal, January 2006, Springer Science + Business Media

    Dr Chris Upton

  39. Article • BMC Genomics, January 2006, Springer Science + Business Media

    Dr Chris Upton

  40. Complete coding sequences of the rabbitpox virus genome

    Article • Journal of General Virology, November 2005, Society for General Microbiology

    Dr Chris Upton, Dr. Rachel Roper

  41. Virulence differences between monkeypox virus isolates from West Africa and the Congo basin

    Article • Virology, September 2005, Elsevier

    Dr Chris Upton, Dr. Rachel Roper

  42. New bioinformatics tools for viral genome analyses at Viral Bioinformatics – Canada

    Article • Pharmacogenomics, April 2005, Future Medicine

    Dr Chris Upton

  43. Genome segment RNA-1 of a flat apple isolate of Cherry rasp leaf virus: nucleotide sequence analysis and RT-PCR detection

    Article • Archives of Virology, March 2005, Springer Science + Business Media

    Dr Chris Upton

  44. Article • BMC Genomics, January 2005, Springer Science + Business Media

    Dr Chris Upton

  45. Article • Virology Journal, January 2005, Springer Science + Business Media

    Dr Chris Upton

  46. Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource

    Article • Nucleic Acids Research, December 2004, Oxford University Press (OUP)

    Dr Chris Upton

  47. Poxvirus Bioinformatics

    Article • January 2004, Springer Science + Business Media

    Dr Chris Upton

  48. Article • BMC Bioinformatics, January 2004, Springer Science + Business Media

    Dr Chris Upton, Dr. Rachel Roper

  49. The Genome Sequence of the SARS-Associated Coronavirus

    Article • Science, May 2003, American Association for the Advancement of Science

    Dr Chris Upton, Dr. Rachel Roper

  50. Shope Fibroma Virus RING Finger Protein N1R Binds DNA and Inhibits Apoptosis

    Article • Virology, September 1998, Elsevier

    Dr Chris Upton

  51. Subversion of Cytokine Networks by Viruses

    Article • International Reviews of Immunology, January 1998, Taylor & Francis

    Dr Chris Upton

  52. A new family of lipolytic plant enzymes with members in rice, arabidopsis and maize

    Article • FEBS Letters, December 1995, Wiley

    Dr Chris Upton

  53. Species Specificity of Ectromelia Virus and Vaccinia Virus Interferon-γ Binding Proteins

    Article • Virology, April 1995, Elsevier

    Dr Chris Upton

  54. Organization of two genes encoding cytotoxic T lymphocyte-specific serine proteases CCPI and CCPII

    Article • Biochemistry, September 1988, American Chemical Society (ACS)

    Dr Chris Upton