All Stories

  1. Comparative Genomics of Myxobacterial Chemosensory Systems

    Article • Journal of Bacteriology, November 2017, ASM Journals

    Dr Srikrishna Subramanian

  2. The insertion domain 1 of class IIA dimeric glycyl-tRNA synthetase is a rubredoxin-like zinc ribbon

    Article • Journal of Structural Biology, April 2015, Elsevier

    Dr Srikrishna Subramanian

  3. Genome sequencing and annotation of Amycolatopsis azurea DSM 43854T

    Article • Genomics Data, December 2014, Elsevier

    Dr Srikrishna Subramanian

  4. Genome sequencing and annotation of Acinetobacter junii strain MTCC 11364

    Article • Genomics Data, December 2014, Elsevier

    Dr Srikrishna Subramanian

  5. Genome sequencing and annotation of Acinetobacter haemolyticus strain MTCC 9819T

    Article • Genomics Data, December 2014, Elsevier

    Dr Srikrishna Subramanian

  6. Genome sequencing and annotation of Acinetobacter guillouiae strain MSP 4-18

    Article • Genomics Data, December 2014, Elsevier

    Dr Srikrishna Subramanian

  7. Genome sequencing and annotation of Acinetobacter gerneri strain MTCC 9824T

    Article • Genomics Data, December 2014, Elsevier

    Dr Srikrishna Subramanian

  8. Genome sequencing and annotation of Acinetobacter gyllenbergii strain MTCC 11365T

    Article • Genomics Data, December 2014, Elsevier

    Dr Srikrishna Subramanian

  9. Repurposing TRASH: Emergence of the enzyme organomercurial lyase from a non-catalytic zinc finger scaffold

    Article • Journal of Structural Biology, October 2014, Elsevier

    Dr Srikrishna Subramanian

  10. Draft Genome Sequence of Kocuria palustris PEL

    Article • Genome Announcements, February 2014, ASM Journals

    Dr Srikrishna Subramanian

  11. Grimontia indica AK16T, sp. nov., Isolated from a Seawater Sample Reports the Presence of Pathogenic Genes Similar to Vibrio Genus

    Article • PLoS ONE, January 2014, PLOS

    Dr Srikrishna Subramanian

  12. Draft Genome Sequence of Plant Growth-Promoting Rhizobacterium Pantoea sp. Strain AS-PWVM4

    Article • Genome Announcements, December 2013, ASM Journals

    Dr Srikrishna Subramanian, Adesh Saini

  13. Draft Genome Sequence of Plant-Growth-Promoting Rhizobacterium Serratia fonticola Strain AU-AP2C, Isolated from the Pea Rhizosphere

    Article • Genome Announcements, December 2013, ASM Journals

    Adesh Saini, Dr Srikrishna Subramanian

  14. Draft Genome Sequence of a Plant Growth-Promoting Rhizobacterium, Serratia fonticola Strain AU-P3(3)

    Article • Genome Announcements, November 2013, ASM Journals

    Adesh Saini, Dr Srikrishna Subramanian

  15. Draft Genome Sequence of the Opportunistic Human Pathogen Morganella morganii SC01

    Article • Genome Announcements, January 2013, ASM Journals

    Dr Srikrishna Subramanian

  16. Evidence of a new metabolic capacity in an emerging diarrheal pathogen: lessons from the draft genomes of Vibrio fluvialis strains PG41 and I21563

    Article • Gut Pathogens, January 2013, Springer Science + Business Media

    Dr Srikrishna Subramanian

  17. Gleaning evolutionary insights from the genome sequence of a probiotic yeast Saccharomyces boulardii

    Article • Gut Pathogens, January 2013, Springer Science + Business Media

    Dr Srikrishna Subramanian

  18. Ethanolamine utilization in Vibrio alginolyticus

    Article • Biology Direct, January 2012, Springer Science + Business Media

    Dr Srikrishna Subramanian

  19. The bridge-region of the Ku superfamily is an atypical zinc ribbon domain

    Article • Journal of Structural Biology, December 2010, Elsevier

    Dr Srikrishna Subramanian

  20. TOPSAN: a dynamic web database for structural genomics

    Article • Nucleic Acids Research, October 2010, Oxford University Press (OUP)

    Dr Srikrishna Subramanian

  21. The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu

    Article • Protein Science, October 2010, Wiley

    Dr Srikrishna Subramanian

  22. TOPSAN: use of a collaborative environment for annotating, analyzing and disseminating data on JCSG and PSI structures

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, September 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  23. Structure of a tryptophanyl-tRNA synthetase containing an iron–sulfur cluster

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, September 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  24. Structure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, September 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  25. Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 fromExiguobacterium sibiricum255-15

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, August 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  26. Structure ofBacteroides thetaiotaomicronBT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, August 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  27. Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved α+β core domain and an auxiliary C-terminal treble-clef zinc finger

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, August 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  28. The structure ofHaemophilus influenzaeprephenate dehydrogenase suggests unique features of bifunctional TyrA enzymes

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, July 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  29. Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiontBacteroides thetaiotaomicron

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, July 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  30. Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC fromBacillus cereusin complex withL-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, July 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  31. Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, July 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  32. A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) fromBacteroides thetaiotaomicronat 2.2 Å resolution

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, July 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  33. Crystal Structure of the First Eubacterial Mre11 Nuclease Reveals Novel Features that May Discriminate Substrates During DNA Repair

    Article • Journal of Molecular Biology, April 2010, Elsevier

    Dr Srikrishna Subramanian

  34. Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, March 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  35. Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of theBacilluschorismate mutase fold and suggest a role in amino-acid metabolism

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, March 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  36. The structure of BVU2987 fromBacteroides vulgatusreveals a superfamily of bacterial periplasmic proteins with possible inhibitory function

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, March 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  37. The structure of SSO2064, the first representative of Pfam family PF01796, reveals a novel two-domain zinc-ribbon OB-fold architecture with a potential acyl-CoA-binding role

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, March 2010, International Union of Crystallography

    Dr Srikrishna Subramanian

  38. Bacterial Pleckstrin Homology Domains: A Prokaryotic Origin for the PH Domain

    Article • Journal of Molecular Biology, February 2010, Elsevier

    Dr Srikrishna Subramanian

  39. TOPSAN: a collaborative annotation environment for structural genomics.

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Dr Srikrishna Subramanian

  40. Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, December 2009, International Union of Crystallography

    Dr Srikrishna Subramanian

  41. Structure of the first representative of Pfam family PF09410 (DUF2006) reveals a structural signature of the calycin superfamily that suggests a role in lipid metabolism

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, December 2009, International Union of Crystallography

    Dr Srikrishna Subramanian

  42. Structure of an essential bacterial protein YeaZ (TM0874) fromThermotoga maritimaat 2.5 Å resolution

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, October 2009, International Union of Crystallography

    Dr Srikrishna Subramanian

  43. The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, October 2009, International Union of Crystallography

    Dr Srikrishna Subramanian

  44. The structure of Jann_2411 (DUF1470) fromJannaschiasp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, October 2009, International Union of Crystallography

    Dr Srikrishna Subramanian

  45. Structure of LP2179, the first representative of Pfam family PF08866, suggests a new fold with a role in amino-acid metabolism

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, October 2009, International Union of Crystallography

    Dr Srikrishna Subramanian

  46. The structure of the first representative of Pfam family PF06475 reveals a new fold with possible involvement in glycolipid metabolism

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, October 2009, International Union of Crystallography

    Dr Srikrishna Subramanian

  47. The structure of KPN03535 (gi|152972051), a novel putative lipoprotein fromKlebsiella pneumoniae, reveals an OB-fold

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, October 2009, International Union of Crystallography

    Dr Srikrishna Subramanian

  48. Conformational changes associated with the binding of zinc acetate at the putative active site ofXcTcmJ, a cupin fromXanthomonas campestrispv.campestris

    Article • Acta Crystallographica Section F Structural Biology and Crystallization Communications, October 2009, International Union of Crystallography

    Dr Srikrishna Subramanian

  49. Exploration of Uncharted Regions of the Protein Universe

    Article • PLoS Biology, September 2009, PLOS

    Dr Srikrishna Subramanian

  50. Crystal Structure of Histidine Phosphotransfer Protein ShpA, an Essential Regulator of Stalk Biogenesis in Caulobacter crescentus

    Article • Journal of Molecular Biology, July 2009, Elsevier

    Dr Srikrishna Subramanian

  51. Structural Basis of Murein Peptide Specificity of a γ-D-Glutamyl-L-Diamino Acid Endopeptidase

    Article • Structure, February 2009, Elsevier

    Dr Srikrishna Subramanian

  52. A Structural Basis for the Regulatory Inactivation of DnaA

    Article • Journal of Molecular Biology, January 2009, Elsevier

    Dr Srikrishna Subramanian

  53. Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 Å resolution

    Article • Proteins Structure Function and Bioinformatics, December 2008, Wiley

    Dr Srikrishna Subramanian

  54. Crystal structure of the Fic (Filamentation induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 Å resolution

    Article • Proteins Structure Function and Bioinformatics, December 2008, Wiley

    Dr Srikrishna Subramanian

  55. Crystal structure of a novel archaeal AAA+ ATPase SSO1545 from Sulfolobus solfataricus

    Article • Proteins Structure Function and Bioinformatics, November 2008, Wiley

    Dr Srikrishna Subramanian

  56. Crystal structures of MW1337R and lin2004: Representatives of a novel protein family that adopt a four-helical bundle fold

    Article • Proteins Structure Function and Bioinformatics, March 2008, Wiley

    Dr Srikrishna Subramanian

  57. Crystal structure of an ADP-ribosylated protein with a cytidine deaminase-like fold, but unknown function (TM1506), from Thermotoga maritima at 2.70 Å resolution

    Article • Proteins Structure Function and Bioinformatics, February 2008, Wiley

    Dr Srikrishna Subramanian

  58. Crystal structure of AICAR transformylase IMP cyclohydrolase (TM1249) fromThermotoga maritima at 1.88 Å resolution

    Article • Proteins Structure Function and Bioinformatics, January 2008, Wiley

    Dr Srikrishna Subramanian

  59. Crystal structure of NMA1982 fromNeisseria meningitidisat 1.5 Å resolution provides a structural scaffold for nonclassical, eukaryotic-like phosphatases

    Article • Proteins Structure Function and Bioinformatics, November 2007, Wiley

    Dr Srikrishna Subramanian

  60. Crystal structure of MtnX phosphatase fromBacillus subtilisat 2.0 Å resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate

    Article • Proteins Structure Function and Bioinformatics, November 2007, Wiley

    Dr Srikrishna Subramanian

  61. Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA

    Article • Proteins Structure Function and Bioinformatics, November 2007, Wiley

    Dr Srikrishna Subramanian

  62. Crystal structures of two novel dye-decolorizing peroxidases reveal a β-barrel fold with a conserved heme-binding motif

    Article • Proteins Structure Function and Bioinformatics, November 2007, Wiley

    Dr Srikrishna Subramanian

  63. Crystal structure of homoserine O-succinyltransferase from Bacillus cereus at 2.4 Å resolution

    Article • Proteins Structure Function and Bioinformatics, June 2007, Wiley

    Dr Srikrishna Subramanian

  64. Crystal structure of TM1030 from Thermotoga maritima at 2.3 Å resolution reveals molecular details of its transcription repressor function

    Article • Proteins Structure Function and Bioinformatics, April 2007, Wiley

    Dr Srikrishna Subramanian

  65. Searching for three-dimensional secondary structural patterns in proteins with ProSMoS

    Article • Bioinformatics, March 2007, Oxford University Press (OUP)

    Dr Srikrishna Subramanian

  66. Crystal structure of a transcription regulator (TM1602) from Thermotoga maritima at 2.3 Å resolution

    Article • Proteins Structure Function and Bioinformatics, January 2007, Wiley

    Dr Srikrishna Subramanian

  67. Crystal structure of 2-phosphosulfolactate phosphatase (ComB) fromClostridium acetobutylicumat 2.6 Å resolution reveals a new fold with a novel active site

    Article • Proteins Structure Function and Bioinformatics, November 2006, Wiley

    Dr Srikrishna Subramanian

  68. Crystal structure of an ORFan protein (TM1622) fromThermotoga maritimaat 1.75 Å resolution reveals a fold similar to the Ran-binding protein Mog1p

    Article • Proteins Structure Function and Bioinformatics, November 2006, Wiley

    Dr Srikrishna Subramanian

  69. Comparative structural analysis of a novel glutathioneS-transferase (ATU5508) fromAgrobacterium tumefaciensat 2.0 Å resolution

    Article • Proteins Structure Function and Bioinformatics, November 2006, Wiley

    Dr Srikrishna Subramanian

  70. Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 Å resolution reveals a new fold

    Article • Proteins Structure Function and Bioinformatics, July 2006, Wiley

    Dr Srikrishna Subramanian

  71. Crystal structure of phosphoribosylformyl-glycinamidine synthase II, PurS subunit (TM1244) from Thermotoga maritima at 1.90 Å resolution

    Article • Proteins Structure Function and Bioinformatics, July 2006, Wiley

    Dr Srikrishna Subramanian

  72. Crystal structure of acireductone dioxygenase (ARD) from Mus musculus at 2.06 Å resolution

    Article • Proteins Structure Function and Bioinformatics, June 2006, Wiley

    Dr Srikrishna Subramanian

  73. Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 Å resolution

    Article • Proteins Structure Function and Bioinformatics, June 2006, Wiley

    Dr Srikrishna Subramanian

  74. Structural Classification of Small, Disulfide-rich Protein Domains

    Article • Journal of Molecular Biology, May 2006, Elsevier

    Dr Srikrishna Subramanian

  75. Crystal structure of TM1367 from Thermotoga maritima at 1.90 Å resolution reveals an atypical member of the cyclophilin (peptidylprolyl isomerase) fold

    Article • Proteins Structure Function and Bioinformatics, March 2006, Wiley

    Dr Srikrishna Subramanian

  76. Crystal structure of phosphoribosylformylglycinamidine synthase II (smPurL) from Thermotoga maritima at 2.15 Å resolution

    Article • Proteins Structure Function and Bioinformatics, March 2006, Wiley

    Dr Srikrishna Subramanian

  77. Crystal structure of a single-stranded DNA-binding protein (TM0604) from Thermotoga maritima at 2.60 Å resolution

    Article • Proteins Structure Function and Bioinformatics, January 2006, Wiley

    Dr Srikrishna Subramanian

  78. Structural drift: a possible path to protein fold change

    Article • Bioinformatics, December 2004, Oxford University Press (OUP)

    Dr Srikrishna Subramanian

  79. The Finger Domain of the Human Deubiquitinating Enzyme HAUSP is a Zinc Ribbon

    Article • Cell Cycle, August 2004, Taylor & Francis

    Dr Srikrishna Subramanian

  80. Structurally Analogous Proteins Do Exist!

    Article • Structure, July 2004, Elsevier

    Dr Srikrishna Subramanian

  81. Structural classification of zinc fingers: SURVEY AND SUMMARY

    Article • Nucleic Acids Research, January 2003, Oxford University Press (OUP)

    Dr Srikrishna Subramanian

  82. CASP5 assessment of fold recognition target predictions

    Article • Proteins Structure Function and Bioinformatics, January 2003, Wiley

    Dr Srikrishna Subramanian

  83. Structural Basis for the Catalysis and Substrate Specificity of Homoserine Kinase †

    Article • Biochemistry, September 2001, American Chemical Society (ACS)

    Dr Srikrishna Subramanian

  84. Structural studies on the empty capsids of physalis mottle virus 1 1Edited by R. Huber

    Article • Journal of Molecular Biology, April 2001, Elsevier

    Dr Srikrishna Subramanian

  85. From open data sharing to insights via community participation: A Structural Genomics case study

    Article • SciVee, Inc

    Dr Srikrishna Subramanian