All Stories

  1. A new lymphoid-primed progenitor marked by Dach1 downregulation identified with single cell multi-omics

    Article • Nature Immunology, October 2020, Springer Science + Business Media

    Shalin Naik

  2. Dendritic cell development at a clonal level within a revised ‘continuous’ model of haematopoiesis

    Article • Molecular Immunology, August 2020, Elsevier

    Shalin Naik

  3. Membrane budding is a major mechanism of in vivo platelet biogenesis

    Article • The Journal of Experimental Medicine, July 2020, Rockefeller University Press

    Shalin Naik

  4. Unique properties of a subset of human pluripotent stem cells with high capacity for self-renewal

    Article • Nature Communications, May 2020, Springer Science + Business Media

    Shalin Naik

  5. RelB suppresses type I Interferon signaling in dendritic cells

    Article • Cellular Immunology, March 2020, Elsevier

    Shalin Naik

  6. A divergent transcriptional landscape underpins the development and functional branching of MAIT cells

    Article • Science Immunology, November 2019, American Association for the Advancement of Science

    Dr Jeffrey Mak, Shalin Naik

  7. Transcriptomic Profiling of Human Pluripotent Stem Cell-Derived Retinal Pigment Epithelium Over Time

    Article • November 2019, Cold Spring Harbor Laboratory Press

    Shalin Naik

  8. Interconversion between Tumorigenic and Differentiated States in Acute Myeloid Leukemia

    Article • Cell Stem Cell, August 2019, Elsevier

    Shalin Naik

  9. Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia

    Article • Nature Communications, June 2019, Springer Science + Business Media

    Shalin Naik

  10. Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments

    Article • Nature Methods, May 2019, Springer Science + Business Media

    Shalin Naik

  11. Barcoding reveals complex clonal behavior in patient-derived xenografts of metastatic triple negative breast cancer

    Article • Nature Communications, February 2019, Springer Science + Business Media

    Shalin Naik

  12. Transcription Factor PU.1 Promotes Conventional Dendritic Cell Identity and Function via Induction of Transcriptional Regulator DC-SCRIPT

    Article • Immunity, January 2019, Elsevier

    Shalin Naik

  13. scRNA-seq mixology: towards better benchmarking of single cell RNA-seq analysis methods

    Article • October 2018, Cold Spring Harbor Laboratory Press

    Shalin Naik

  14. scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data

    Article • PLoS Computational Biology, August 2018, PLOS

    Shalin Naik

  15. Longitudinal single cell fate of hematopoiesis in vivo using cellular barcoding and DiSNE movie visualization

    Article • March 2018, Cold Spring Harbor Laboratory Press

    Shalin Naik

  16. DiSNE Movie Visualization and Assessment of Clonal Kinetics Reveal Multiple Trajectories of Dendritic Cell Development

    Article • Cell Reports, March 2018, Elsevier

    Shalin Naik

  17. Deciphering the Innate Lymphoid Cell Transcriptional Program

    Article • Cell Reports, October 2016, Elsevier

    Shalin Naik

  18. Site-specific recombinatorics: in situ cellular barcoding with the Cre Lox system

    Article • BMC Systems Biology, June 2016, Springer Science + Business Media

    Shalin Naik

  19. Editorial: Dendritic Cell and Macrophage Nomenclature and Classification

    Article • Frontiers in Immunology, May 2016, Frontiers

    Shalin Naik

  20. Reproducibility of Illumina platform deep sequencing errors allows accurate determination of DNA barcodes in cells

    Article • BMC Bioinformatics, April 2016, Springer Science + Business Media

    Shalin Naik

  21. Dendritic Cell and Macrophage Nomenclature and Classification

    Article • January 2016, Frontiers

    Shalin Naik

  22. Identification of cDC1- and cDC2-committed DC progenitors reveals early lineage priming at the common DC progenitor stage in the bone marrow

    Article • Nature Immunology, June 2015, Nature

    Dr Paul Robson, Shalin Naik

  23. Toward defining a ‘lineage’ – The case for dendritic cells

    Article • Seminars in Cell and Developmental Biology, May 2015, Elsevier

    Shalin Naik

  24. Cellular barcoding: A technical appraisal

    Article • Experimental Hematology, August 2014, Elsevier

    Shalin Naik

  25. Segmentation of occluded hematopoietic stem cells from tracking

    Article • August 2014, Institute of Electrical & Electronics Engineers (IEEE)

    Shalin Naik

  26. RB Family Tumor Suppressor Activity May Not Relate to Active Silencing of E2F Target Genes

    Article • Cancer Research, July 2014, American Association for Cancer Research (AACR)

    Shalin Naik

  27. Dendritic cells, monocytes and macrophages: a unified nomenclature based on ontogeny

    Article • Nature Reviews Immunology, July 2014, Springer Science + Business Media

    Shalin Naik

  28. Lymphoid Tissue and Plasmacytoid Dendritic Cells and Macrophages Do Not Share a Common Macrophage-Dendritic Cell-Restricted Progenitor

    Article • Immunity, July 2014, Elsevier

    Shalin Naik

  29. Determining Lineage Pathways from Cellular Barcoding Experiments

    Article • Cell Reports, February 2014, Elsevier

    Professor Rob J de Boer, Shalin Naik

  30. Diverse and heritable lineage imprinting of early hematopoietic progenitors

    Article • Experimental Hematology, August 2013, Elsevier

    Professor Rob J de Boer, Shalin Naik

  31. Diverse and heritable lineage imprinting of early haematopoietic progenitors

    Article • Nature, April 2013, Nature

    Professor Rob J de Boer, Shalin Naik

  32. Heterogeneous Differentiation Patterns of Individual CD8+ T Cells

    Article • Science, March 2013, American Association for the Advancement of Science

    Shalin Naik

  33. Plasmacytoid Dendritic Cell Development

    Article • January 2013, Elsevier

    Shalin Naik

  34. The invariant chain transports TNF family member CD70 to MHC class II compartments in dendritic cells

    Article • Journal of Cell Science, October 2010, The Company of Biologists

    Shalin Naik

  35. Deficient CD40-TRAF6 signaling in leukocytes prevents atherosclerosis by skewing the immune response toward an antiinflammatory profile

    Article • The Journal of Experimental Medicine, January 2010, Rockefeller University Press

    Shalin Naik

  36. Dendritic Cell Protocols

    Article • January 2010, Springer Science + Business Media

    Shalin Naik

  37. Homeostasis of dendritic cells in lymphoid organs is controlled by regulation of their precursors via a feedback loop

    Article • Blood, November 2009, American Society of Hematology

    Shalin Naik

  38. Generation of Large Numbers of Pro-DCs and Pre-DCs In Vitro

    Article • November 2009, Springer Science + Business Media

    Shalin Naik

  39. CD8+, CD8−, and Plasmacytoid Dendritic Cell Generation In Vitro Using flt3 Ligand

    Article • November 2009, Springer Science + Business Media

    Shalin Naik

  40. Costimulatory ligand CD70 allows induction of CD8+ T-cell immunity by immature dendritic cells in a vaccination setting

    Article • Blood, May 2009, American Society of Hematology

    Shalin Naik

  41. Correction for Proietto et al., Dendritic cells in the thymus contribute to T-regulatory cell induction

    Article • Proceedings of the National Academy of Sciences, February 2009, Proceedings of the National Academy of Sciences

    Shalin Naik

  42. Dendritic cells in the thymus contribute to T-regulatory cell induction

    Article • Proceedings of the National Academy of Sciences, December 2008, Proceedings of the National Academy of Sciences

    Shalin Naik

  43. Demystifying the development of dendritic cell subtypes, a little

    Article • Immunology and Cell Biology, April 2008, Wiley

    Shalin Naik

  44. Normal proportion and expression of maturation markers in migratory dendritic cells in the absence of germs or Toll‐like receptor signaling

    Article • Immunology and Cell Biology, November 2007, Wiley

    Shalin Naik

  45. Differential Development of Murine Dendritic Cells by GM-CSF versus Flt3 Ligand Has Implications for Inflammation and Trafficking

    Article • The Journal of Immunology, November 2007, The American Association of Immunologists

    Shalin Naik

  46. Development of plasmacytoid and conventional dendritic cell subtypes from single precursor cells derived in vitro and in vivo

    Article • Nature Immunology, October 2007, Springer Science + Business Media

    Shalin Naik

  47. Steady-state and inflammatory dendritic-cell development

    Article • Nature Reviews Immunology, December 2006, Springer Science + Business Media

    Shalin Naik

  48. Intrasplenic steady-state dendritic cell precursors that are distinct from monocytes

    Article • Nature Immunology, May 2006, Springer Science + Business Media

    Shalin Naik

  49. Development of murine plasmacytoid dendritic cell subsets

    Article • Immunology and Cell Biology, October 2005, Wiley

    Shalin Naik

  50. Cutting Edge: Generation of Splenic CD8+and CD8−Dendritic Cell Equivalents in Fms-Like Tyrosine Kinase 3 Ligand Bone Marrow Cultures

    Article • The Journal of Immunology, May 2005, The American Association of Immunologists

    Shalin Naik

  51. CD8α+ mouse spleen dendritic cells do not originate from the CD8α- dendritic cell subset

    Article • Blood, July 2003, American Society of Hematology

    Shalin Naik

  52. The Molecular Basis for the Lack of Immunostimulatory Activity of Vertebrate DNA

    Article • The Journal of Immunology, April 2003, The American Association of Immunologists

    Shalin Naik

  53. Phosphorothioate Backbone Modification Modulates Macrophage Activation by CpG DNA

    Article • The Journal of Immunology, October 2000, The American Association of Immunologists

    Shalin Naik

  54. Phosphorothioate Backbone Modification to Changes the Pattern of Responses CpG Motifs

    Article • Springer Science + Business Media

    Shalin Naik