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  1. Adjunctive zinc supplementation with methotrexate improves therapeutic outcomes in an animal model of arthritis

    Article • Inflammopharmacology, October 2025, Springer Science + Business Media

    Dr. Shakir Ali

  2. Urolithin-A supplementation alleviates sepsis-induced acute lung injury by reducing mitochondrial dysfunction and modulating macrophage polarization

    Article • Mitochondrion, September 2025, Elsevier

    Dr. Shakir Ali

  3. Profiling HIV1-host protein–protein interaction networks in patient-derived exosome proteins: impact on pathophysiology and innate immune pathways

    Article • Virology Journal, July 2025, Springer Science + Business Media

    Dr. Shakir Ali

  4. A dynamin-like protein in Plasmodium falciparum plays an essential role in parasite growth, mitochondrial development and homeostasis during asexual blood stages

    Article • Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, June 2025, Elsevier

    Dr. Shakir Ali

  5. Combating sepsis-induced acute lung injury: PARP1 inhibition mediates oxidative stress mitigation and miR-135a-5p/SMAD5/Nanog axis drives regeneration

    Article • International Immunopharmacology, February 2025, Elsevier

    Dr. Shakir Ali

  6. Two Novel Peptides from Buthotus saulcyi Scorpion Venom: Proteomic Analysis and Approaches

    Article • Current Proteomics, January 2025, Elsevier

    Dr. Shakir Ali

  7. Phenoconversion and in vivo phenotyping of hepatic cytochrome P450: implications in predictive precision medicine and personalized therapy

    Article • Hepatology Forum, January 2025, Kare Publishing

    Dr. Shakir Ali

  8. Vitexin mitigates oxidative stress, mitochondrial damage, pyroptosis and regulates small nucleolar RNA host gene 1/DNA methyltransferase 1/microRNA-495 axis in sepsis-associated acute lung injury

    Article • Inflammopharmacology, December 2024, Springer Science + Business Media

    Dr. Shakir Ali

  9. Therapeutic Dose of Zinc Aspartate and Zinc Citrate Attenuates Disease Activity Indices in Rheumatoid Arthritis

    Article • Biological Trace Element Research, November 2024, Springer Science + Business Media

    Dr. Shakir Ali

  10. Proteomic analysis of two novel peptides from the Odontobuthus doriae scorpion venom

    Article • Journal of Asian Natural Products Research, September 2024, Taylor & Francis

    Dr. Shakir Ali

  11. Identifying quantitative sncRNAs signature using global sequencing as a potential biomarker for tuberculosis diagnosis and their role in regulating host response

    Article • International Journal of Biological Macromolecules, June 2024, Elsevier

    Dr. Shakir Ali

  12. Boron Facilitates Amelioration of Hepatic Injury by the Osmolyte Glycine and Resolves Injury by Improving the Tissue Redox Homeostasis

    Article • Journal of Dietary Supplements, March 2024, Taylor & Francis

    Dr. Shakir Ali

  13. Investigating the link between miR-34a-5p and TLR6 signaling in sepsis-induced ARDS

    Article • 3 Biotech, July 2023, Springer Science + Business Media

    Dr. Shakir Ali

  14. Role of non-coding RNAs against salinity stress in Oryza species: Strategies and challenges in analyzing miRNAs, tRFs and circRNAs

    Article • International Journal of Biological Macromolecules, July 2023, Elsevier

    Dr. Shakir Ali

  15. Correction: Gupta et al. Neutrophil Extracellular Traps Promote NLRP3 Inflammasome Activation and Glomerular Endothelial Dysfunction in Diabetic Kidney Disease. Nutrients 2022, 14, 2965

    Article • Nutrients, May 2023, MDPI AG

    Dr. Shakir Ali

  16. Pyrazoline Scaffold: Hit Identification to Lead Synthesis and Biological Evaluation As Antidiabetic Agents

    Article • Future Medicinal Chemistry, January 2023, Taylor & Francis

    Dr. Shakir Ali

  17. Genetic polymorphism of fatty acid binding protein‐2 in hyperlipidemic Asian Indians in North India

    Article • American Journal of Human Biology, November 2022, Wiley

    Dr. Shakir Ali

  18. Neutrophil Extracellular Traps Promote NLRP3 Inflammasome Activation and Glomerular Endothelial Dysfunction in Diabetic Kidney Disease

    Article • Nutrients, July 2022, MDPI AG

    Dr. Shakir Ali

  19. Latent Tuberculosis Infection Diagnosis among Household Contacts in a High Tuberculosis-Burden Area: a Comparison between Transcript Signature and Interferon Gamma Release Assay

    Article • Microbiology Spectrum, April 2022, ASM Journals

    Dr. Shakir Ali

  20. Dual role of an essential HtrA2/Omi protease in the human malaria parasite: maintenance of mitochondrial homeostasis and induction of apoptosis like cell death under cellular stress

    Article • March 2022, Cold Spring Harbor Laboratory Press

    Dr. Shakir Ali

  21. miRPreM and tiRPreM: Improved methodologies for the prediction of miRNAs and tRNA-induced small non-coding RNAs for model and non-model organisms

    Article • Briefings in Bioinformatics, November 2021, Oxford University Press (OUP)

    Dr. Shakir Ali

  22. Mitochondrial dynamics and mitophagy in lung disorders

    Article • Life Sciences, November 2021, Elsevier

    Dr. Shakir Ali

  23. Mechanism of Mitophagy and Its Role in Sepsis Induced Organ Dysfunction: A Review

    Article • Frontiers in Cell and Developmental Biology, June 2021, Frontiers

    Dr. Shakir Ali

  24. Xanthone glucoside 2-β-D-glucopyranosyl-1,3,6,7-tetrahydroxy-9H-xanthen-9-one binds to the ATP-binding pocket of glycogen synthase kinase 3β and inhibits its activity: implications in prostate cancer and associated cardiovascular disease risk

    Article • Journal of Biomolecular Structure and Dynamics, March 2021, Taylor & Francis

    Dr. Shakir Ali

  25. Personalized Care: Prevention of Lifestyle Diseases

    Article • October 2020, IntechOpen

    Dr. Shakir Ali

  26. Inhibition of miRNA-34a Promotes M2 Macrophage Polarization and Improves LPS-Induced Lung Injury by Targeting Klf4

    Article • Genes, August 2020, MDPI AG

    Ravins Dohare, Dr. Shakir Ali

  27. In silico strategies for probing novel DPP-IV inhibitors as anti-diabetic agents

    Article • Journal of Biomolecular Structure and Dynamics, April 2020, Taylor & Francis

    Dr. Shakir Ali

  28. Metabolic effects of exposure to pesticides during gestation in female Wistar rats and their offspring: a risk factor for diabetes?

    Article • Toxicological Research, February 2020, Springer Science + Business Media

    Dr. Shakir Ali

  29. In-silico profiling and structural insights into the impact of nSNPs in the P. falciparum acetyl-CoA transporter gene to understand the mechanism of drug resistance in malaria

    Article • Journal of Biomolecular Structure and Dynamics, January 2020, Taylor & Francis

    Mr Dhananjay Dasiram Jade, Dr. Shakir Ali

  30. Synthesis, characterization and anti-inflammatory activity evaluation of 1,2,4-triazole and its derivatives as a potential scaffold for the synthesis of drugs against prostaglandin-endoperoxide synthase

    Article • Journal of Biomolecular Structure and Dynamics, January 2020, Taylor & Francis

    Dr. Shakir Ali

  31. Mining of potential dipeptidyl peptidase-IV inhibitors as anti-diabetic agents using integrated in silico approaches

    Article • Journal of Biomolecular Structure and Dynamics, December 2019, Taylor & Francis

    Dr. Shakir Ali

  32. Identification of key regulators in prostate cancer from gene expression datasets of patients

    Article • Scientific Reports, November 2019, Springer Science + Business Media

    Dr. Shakir Ali

  33. Late Breaking Abstract - Vitamin D suppresses LPS-induced ER stress and inflammation via modulation of mir-34a/Sirt1 axis in acute lung injury

    Article • September 2019, European Respiratory Society (ERS)

    Shaniya Ahmad, Dr. Shakir Ali

  34. TLRs in pulmonary diseases

    Article • Life Sciences, September 2019, Elsevier

    Dr. Shakir Ali

  35. C2-β-D-glucopyranosyl-1,3,6,7-tetrahydroxyxanthone activates pancreatic and hepatic hexokinase

    Article • Journal of Biomolecular Structure and Dynamics, August 2019, Taylor & Francis

    Dr. Dinesh Gupta, Dr. Shakir Ali

  36. Gestational Exposure to Pesticides Induces Oxidative Stress and Lipid Peroxidation in Offspring that Persist at Adult Age in an Animal Model

    Article • Toxicological Research, July 2019, The Korean Society of Toxicology

    Dr. Shakir Ali

  37. Identification of novel small molecule non-peptidomimetic inhibitor for prolyl oligopeptidase through in silico and in vitro approaches

    Article • Journal of Biomolecular Structure and Dynamics, April 2019, Taylor & Francis

    Apeksha Shrivastava, Shubham Srivastava, Dr. Shakir Ali

  38. Expansion of a novel lead targeting M. tuberculosis DHFR as antitubercular agents

    Article • Bioorganic & Medicinal Chemistry, April 2019, Elsevier

    Dr. Shakir Ali

  39. In vivo phenotyping of cytochrome 450 isoforms involved in the metabolism of anti-HIV and anti-tubercular drugs in human using cocktail approach: An LC–MS/MS analysis

    Article • Journal of Pharmaceutical and Biomedical Analysis, February 2019, Elsevier

    Dr. Shakir Ali

  40. Soy Isoflavones in Integrative Oncology: Increased Efficacy and Decreased Toxicity of Cancer Therapy

    Article • Integrative Cancer Therapies, January 2019, SAGE Publications

    Dr. Shakir Ali

  41. ApicoTFdb: the comprehensive web repository of apicomplexan transcription factors and transcription-associated co-factors

    Article • Database, January 2019, Oxford University Press (OUP)

    Dr. Shakir Ali, Dr. Dinesh Gupta

  42. Boron inhibits apoptosis in hyperapoptosis condition: Acts by stabilizing the mitochondrial membrane and inhibiting matrix remodeling

    Article • Biochimica et Biophysica Acta (BBA) - General Subjects, January 2019, Elsevier

    Dr. Shakir Ali

  43. Structural comparison of Mtb-DHFR and h-DHFR for design, synthesis and evaluation of selective non-pteridine analogues as antitubercular agents

    Article • Bioorganic Chemistry, October 2018, Elsevier

    Dr. Shakir Ali

  44. Aedes aegypti microRNA miR-2b regulates ubiquitin-related modifier to control chikungunya virus replication

    Article • Scientific Reports, December 2017, Springer Science + Business Media

    Dr. Shakir Ali

  45. In silico approach for bioremediation of arsenic by structure prediction and docking studies of arsenite oxidase from Pseudomonas stutzeri TS44

    Article • International Biodeterioration & Biodegradation, August 2017, Elsevier

    Dr. Shakir Ali