All Stories

  1. Multi-omics approach for identifying CNV-associated lncRNA signatures with prognostic value in prostate cancer

    Article • Non-coding RNA Research, March 2024, Elsevier

    Dr. Dinesh Gupta

  2. Synthesis, Characterization, Antiglycation Evaluation, Molecular Docking, and ADMET Studies of 4-Thiazolidinone Derivatives

    Article • ACS Omega, December 2023, American Chemical Society (ACS)

    Dr. Dinesh Gupta

  3. In silico evaluation of 4-thiazolidinone-based inhibitors against the receptor for advanced glycation end products (RAGE)

    Article • Journal of Biomolecular Structure and Dynamics, December 2023, Taylor & Francis

    Dr. Dinesh Gupta

  4. VirulentPred 2.0: An improved method for prediction of virulent proteins in bacterial pathogens

    Article • Protein Science, November 2023, Wiley

    Dr. Dinesh Gupta

  5. Machine learning analysis of lung squamous cell carcinoma gene expression datasets reveals novel prognostic signatures

    Article • Computers in Biology and Medicine, October 2023, Elsevier

    Dr. Dinesh Gupta

  6. In silico studies of alkaloids and their derivatives against N-acetyltransferase EIS protein from Mycobacterium tuberculosis

    Article • Journal of Biomolecular Structure and Dynamics, September 2023, Taylor & Francis

    Dr. Dinesh Gupta

  7. Identification of Novel Tau-Tubulin Kinase 2 Inhibitors Using Computational Approaches

    Article • ACS Omega, March 2023, American Chemical Society (ACS)

    Dr. Dinesh Gupta

  8. Deciphering novel common gene signatures for rheumatoid arthritis and systemic lupus erythematosus by integrative analysis of transcriptomic profiles

    Article • PLoS ONE, March 2023, PLOS

    Dr. Dinesh Gupta

  9. Designing of new tetrahydro-β-carboline-based ABCG2 inhibitors using 3D-QSAR, molecular docking, and DFT tools

    Article • Journal of Biomolecular Structure and Dynamics, February 2023, Taylor & Francis

    Dr. Dinesh Gupta

  10. Analysis of breast cancer next-generation sequencing datasets for identifying fusion genes responsible for the cancer progression

    Article • Informatics in Medicine Unlocked, January 2023, Elsevier

    Dr. Dinesh Gupta

  11. Characterization of Plasmodium falciparum RAP domain proteins-RAP291 and RAP070, and their association with ribosomal RNAs

    Article • September 2022, Cold Spring Harbor Laboratory Press

    Dr. Dinesh Gupta

  12. Bazedoxifene, a Postmenopausal Drug, Acts as an Antimalarial and Inhibits Hemozoin Formation

    Article • Microbiology Spectrum, June 2022, ASM Journals

    Dr. Dinesh Gupta

  13. Natural selection plays a significant role in governing the codon usage bias in the novel SARS-CoV-2 variants of concern (VOC)

    Article • PeerJ, June 2022, PeerJ

    Dr. Dinesh Gupta

  14. Insights into the structure and dynamics of SARS-CoV-2 spike glycoprotein double mutant L452R-E484Q

    Article • 3 Biotech, March 2022, Springer Science + Business Media

    Dr. Dinesh Gupta

  15. DriverFuse: An R package for analysis of next-generation sequencing datasets to identify cancer driver fusion genes

    Article • PLoS ONE, February 2022, PLOS

    Dr. Dinesh Gupta

  16. Lead optimization, pharmacophore development and scaffold design of protein kinase CK2 inhibitors as potential COVID-19 therapeutics

    Article • Journal of Biomolecular Structure and Dynamics, January 2022, Taylor & Francis

    Dr. Dinesh Gupta

  17. Artemisinin Binds and Inhibits the Activity of Plasmodium falciparum Ddi1, a Retroviral Aspartyl Protease

    Article • Pathogens, November 2021, MDPI AG

    Dr. Dinesh Gupta

  18. ASCoVPred: a machine learning-based platform for quantitative prediction of anti-SARS-CoV-2 activity and human cell toxicity of molecules

    Article • October 2021, Research Square

    Dr. Dinesh Gupta

  19. Targeting cathepsins: A potential link between COVID-19 and associated neurological manifestations

    Article • Heliyon, October 2021, Elsevier

    Dr. Dinesh Gupta

  20. Integrative analysis of transcriptomic profiles reveals shared gene signatures of Rheumatoid Arthritis and Systemic Lupus Erythromatosus

    Article • September 2021, Research Square

    Dr. Dinesh Gupta

  21. The structural, functional, and dynamic effect of Tau tubulin kinase1 upon a mutation: A neuro‐degenerative hotspot

    Article • Journal of Cellular Biochemistry, July 2021, Wiley

    Dr. Dinesh Gupta

  22. Plasmodium falciparum DDX17 is an RNA helicase crucial for parasite development

    Article • Biochemistry and Biophysics Reports, July 2021, Elsevier

    Dr. Dinesh Gupta

  23. Atomic Resolution Homology Models and Molecular Dynamics Simulations of Plasmodium falciparum Tubulins

    Article • ACS Omega, June 2021, American Chemical Society (ACS)

    Dr. Dinesh Gupta

  24. Computational Design of Novel Allosteric Inhibitors for Plasmodium falciparum DegP

    Article • Molecules, May 2021, MDPI AG

    Dr. Dinesh Gupta

  25. Unsupervised subtyping and methylation landscape of pancreatic ductal adenocarcinoma

    Article • Heliyon, January 2021, Elsevier

    Dr. Dinesh Gupta

  26. A molecular journey to check the conformational dynamics of tau tubulin kinase 2 mutations associated with Alzheimer's disease

    Article • RSC Advances, January 2021, Royal Society of Chemistry

    Dr. Dinesh Gupta

  27. Plasmodium DEH is ER-localized and crucial for oocyst mitotic division during malaria transmission

    Article • Life Science Alliance, October 2020, Life Science Alliance, LLC

    Dr. Dinesh Gupta

  28. Artificial Intelligence-Based Classification of Chest X-Ray Images into COVID-19 and Other Infectious Diseases

    Article • International Journal of Biomedical Imaging, October 2020, Hindawi Publishing Corporation

    Dr. Dinesh Gupta

  29. Dataset of mutational analysis, miRNAs targeting SARS-CoV-2 genes and host gene expression in SARS-CoV and SARS-CoV-2 infections

    Article • Data in Brief, October 2020, Elsevier

    Dr. Dinesh Gupta

  30. Integrative analyses of SARS-CoV-2 genomes from different geographical locations reveal unique features potentially consequential to host-virus interaction, pathogenesis and clues for novel therapies

    Article • Heliyon, September 2020, Elsevier

    Dr. Dinesh Gupta

  31. Changes in strand 6B and helix B during neuroserpin inhibition: Implication in severity of clinical phenotype

    Article • Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, April 2020, Elsevier

    Dr. Dinesh Gupta

  32. Comparative analyses of SAR-CoV2 genomes from different geographical locations and other coronavirus family genomes reveals unique features potentially consequential to host-virus interaction and pathogenesis

    Article • March 2020, Cold Spring Harbor Laboratory Press

    Dr. Dinesh Gupta

  33. Classifying juvenile onset primary open angle glaucoma using cluster analysis

    Article • British Journal of Ophthalmology, September 2019, BMJ

    Dr. Dinesh Gupta

  34. C2-β-D-glucopyranosyl-1,3,6,7-tetrahydroxyxanthone activates pancreatic and hepatic hexokinase

    Article • Journal of Biomolecular Structure and Dynamics, August 2019, Taylor & Francis

    Dr. Dinesh Gupta, Dr. Shakir Ali

  35. Classification models for Invasive Ductal Carcinoma Progression, based on gene expression data-trained supervised machine learning

    Article • June 2019, Cold Spring Harbor Laboratory Press

    Dr. Dinesh Gupta

  36. ApicoTFdb: The comprehensive web repository of apicomplexan transcription factors and regulators

    Article • January 2019, Cold Spring Harbor Laboratory Press

    Dr. Dinesh Gupta

  37. ApicoTFdb: the comprehensive web repository of apicomplexan transcription factors and transcription-associated co-factors

    Article • Database, January 2019, Oxford University Press (OUP)

    Dr. Shakir Ali, Dr. Dinesh Gupta

  38. A novel identification approach for discovery of 5-HydroxyTriptamine 2A antagonists: combination of 2D/3D similarity screening, molecular docking and molecular dynamics

    Article • Journal of Biomolecular Structure and Dynamics, March 2018, Taylor & Francis

    Dr. Dinesh Gupta, Mr Dhananjay Dasiram Jade

  39. PRmePRed: A protein arginine methylation prediction tool

    Article • PLoS ONE, August 2017, PLOS

    Dr. Dinesh Gupta

  40. KiPho: malaria parasite kinome and phosphatome portal

    Article • Database, January 2017, Oxford University Press (OUP)

    Dr. Dinesh Gupta

  41. Develop CYP1B1 specific candidate inhibitors

    Article • Chemical Biology & Drug Design, July 2016, Wiley

    Dr. Dinesh Gupta

  42. miRMOD: a tool for identification and analysis of 5′ and 3′ miRNA modifications in Next Generation Sequencing small RNA data

    Article • PeerJ, October 2015, PeerJ

    Dr. Dinesh Gupta