All Stories

  1. The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth

    Article • PLoS Computational Biology, May 2020, PLOS

    Dr. Sanne Abeln

  2. Impact of pathogenic mutations of the GLUT1 glucose transporter on channel dynamics using ConsDYN enhanced sampling

    Article • F1000Research, March 2019, Faculty of 1000, Ltd.

    Dr. Sanne Abeln

  3. Motif-Aware PRALINE: Improving the alignment of motif regions

    Article • PLoS Computational Biology, November 2018, PLOS

    Dr. Sanne Abeln

  4. The characteristics of molten globule states and folding pathways strongly depend on the sequence of a protein

    Article • Molecular Physics, July 2018, Taylor & Francis

    Wan Fokkink, Dr. Sanne Abeln

  5. Training for translation between disciplines: a philosophy for life and data sciences curricula

    Article • Bioinformatics, June 2018, Oxford University Press (OUP)

    Dr. Sanne Abeln

  6. Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer

    Article • Scientific Reports, May 2018, Springer Science + Business Media

    Dr. Sanne Abeln

  7. Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data

    Article • F1000Research, August 2017, Faculty of 1000, Ltd.

    Mr Chao Zhang, Dr. Sanne Abeln, Stefan Payralbe, Ward Weistra, Rita Azevedo, Luiz Olavo Bonino da Silva Santos

  8. GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes

    Article • F1000Research, July 2017, Faculty of 1000, Ltd.

    Dr. Sanne Abeln

  9. Integration of EGA secure data access into Galaxy

    Article • F1000Research, December 2016, Faculty of 1000, Ltd.

    Dr. Sanne Abeln, Mr Chao Zhang

  10. Multiple Sequence Alignment

    Article • November 2016, Springer Science + Business Media

    Dr. Sanne Abeln

  11. Integrating Candida albicans metabolism with biofilm heterogeneity by transcriptome mapping

    Article • Scientific Reports, October 2016, Nature

    Dr. Sanne Abeln

  12. GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes

    Article • F1000Research, September 2016, Faculty of 1000, Ltd.

    Dr. Sanne Abeln

  13. ECCB 2016: The 15th European Conference on Computational Biology

    Article • Bioinformatics, September 2016, Oxford University Press (OUP)

    Dr. Sanne Abeln

  14. Mechanical Unfolding of an Autotransporter Passenger Protein Reveals the Secretion Starting Point and Processive Transport Intermediates

    Article • ACS Nano, June 2016, American Chemical Society (ACS)

    Dr. Sanne Abeln

  15. BioASF: a framework for automatically generating executable pathway models specified in BioPAX

    Article • Bioinformatics, June 2016, Oxford University Press (OUP)

    Dr. Sanne Abeln

  16. Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Denaturation

    Article • Physical Review Letters, February 2016, American Physical Society (APS)

    Dr. Sanne Abeln

  17. Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics Simulations

    Article • PLoS Computational Biology, October 2015, PLOS

    Dr. Sanne Abeln, Professor Michele Vendruscolo

  18. High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer

    Article • PLoS ONE, September 2015, PLOS

    Dr. Sanne Abeln

  19. metaModules identifies key functional subnetworks in microbiome-related disease

    Article • Bioinformatics, September 2015, Oxford University Press (OUP)

    Dr. Sanne Abeln

  20. Explaining disease using big data: How valid is your pathway?

    Article • July 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Sanne Abeln

  21. The Hydrophobic Temperature Dependence of Amino Acids Directly Calculated from Protein Structures

    Article • PLoS Computational Biology, May 2015, PLOS

    Dr. Sanne Abeln

  22. Quantifying the Displacement of Mismatches in Multiple Sequence Alignment Benchmarks

    Article • PLoS ONE, May 2015, PLOS

    Dr. Sanne Abeln

  23. NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL

    Article • Nucleic Acids Research, April 2015, Oxford University Press (OUP)

    Dr. Sanne Abeln

  24. Competition between surface adsorption and folding of fibril-forming polypeptides

    Article • Physical Review E, February 2015, American Physical Society (APS)

    Dr. Sanne Abeln

  25. Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations

    Article • Bioinformatics, February 2014, Oxford University Press (OUP)

    Dr. Sanne Abeln

  26. A Simple Lattice Model That Captures Protein Folding, Aggregation and Amyloid Formation

    Article • PLoS ONE, January 2014, PLOS

    Professor Michele Vendruscolo, Dr. Sanne Abeln

  27. Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins

    Article • Bioinformatics, November 2013, Oxford University Press (OUP)

    Dr. Sanne Abeln

  28. Exploring Fold Space Preferences of New-born and Ancient Protein Superfamilies

    Article • PLoS Computational Biology, November 2013, PLOS

    Dr. Sanne Abeln

  29. Interplay between Folding and Assembly of Fibril-Forming Polypeptides

    Article • Physical Review Letters, July 2013, American Physical Society (APS)

    Dr. Sanne Abeln

  30. Bioinformatics and Systems Biology: bridging the gap between heterogeneous student backgrounds

    Article • Briefings in Bioinformatics, April 2013, Oxford University Press (OUP)

    Dr. Sanne Abeln

  31. Comparing clustering and pre-processing in taxonomy analysis

    Article • Bioinformatics, September 2012, Oxford University Press (OUP)

    Dr. Sanne Abeln

  32. Correction

    Article • Biophysical Journal, August 2011, Elsevier

    Dr. Sanne Abeln

  33. Accounting for Protein-Solvent Contacts Facilitates Design of Nonaggregating Lattice Proteins

    Article • Biophysical Journal, February 2011, Elsevier

    Dr. Sanne Abeln

  34. Multiple alignment of transmembrane protein sequences

    Article • January 2010, Springer Science + Business Media

    Dr. Sanne Abeln

  35. Disordered Flanks Prevent Peptide Aggregation

    Article • PLoS Computational Biology, December 2008, PLOS

    Dr. Sanne Abeln

  36. Using Phylogeny to Improve Genome-Wide Distant Homology Recognition

    Article • PLoS Computational Biology, January 2007, PLOS

    Dr. Sanne Abeln

  37. Linking evolution of protein structures through fragments

    Article • BMC Systems Biology, January 2007, Springer Science + Business Media

    Dr. Sanne Abeln

  38. Fold usage on genomes and protein fold evolution

    Article • Proteins Structure Function and Bioinformatics, July 2005, Wiley

    Dr. Sanne Abeln, Charlotte Deane

  39. How old is your fold?

    Article • Bioinformatics, June 2005, Oxford University Press (OUP)

    Dr. Sanne Abeln

  40. Using phylogeny to improve genome wide distant homology recognition

    Article • PLoS Computational Biology, January 2005, PLOS

    Dr. Sanne Abeln