Dr. Sanne Abeln

  • Vrije Universiteit Amsterdam
  • Lecturer, Computer Science
  • Netherlands

My co-authors include

Rita Azevedo
Luiz Olavo Bonino da Silva Santos
Charlotte Deane

My Publications

Impact of pathogenic mutations of the GLUT1 glucose transporter on channel dynamics usi...

  • F1000Research
  • March 2019

Motif-Aware PRALINE: Improving the alignment of motif regions

  • PLoS Computational Biology
  • November 2018

The characteristics of molten globule states and folding pathways strongly depend on th...

  • Molecular Physics
  • July 2018

Training for translation between disciplines: a philosophy for life and data sciences c...

  • Bioinformatics
  • June 2018

Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colore...

  • Scientific Reports
  • May 2018

Systematically linking tranSMART, Galaxy and EGA for reusing human translational resear...

  • F1000Research
  • August 2017

GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal bre...

  • F1000Research
  • July 2017

Integration of EGA secure data access into Galaxy

  • F1000Research
  • December 2016

Multiple Sequence Alignment

  • November 2016

Integrating Candida albicans metabolism with biofilm heterogeneity by transcriptome map...

  • Scientific Reports
  • October 2016

GeneBreak: detection of recurrent DNA copy number aberration-associated chromosomal bre...

  • F1000Research
  • September 2016

ECCB 2016: The 15th European Conference on Computational Biology

  • Bioinformatics
  • September 2016

Mechanical Unfolding of an Autotransporter Passenger Protein Reveals the Secretion Star...

  • ACS Nano
  • June 2016

BioASF: a framework for automatically generating executable pathway models specified in...

  • Bioinformatics
  • June 2016

Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Dena...

  • Physical Review Letters
  • February 2016

Mapping the Protein Fold Universe Using the CamTube Force Field in Molecular Dynamics S...

  • PLoS Computational Biology
  • October 2015

High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Color...

  • PLoS ONE
  • September 2015

metaModules identifies key functional subnetworks in microbiome-related disease

  • Bioinformatics
  • September 2015

Explaining disease using big data: How valid is your pathway?

  • July 2015

The Hydrophobic Temperature Dependence of Amino Acids Directly Calculated from Protein ...

  • PLoS Computational Biology
  • May 2015

Quantifying the Displacement of Mismatches in Multiple Sequence Alignment Benchmarks

  • PLoS ONE
  • May 2015

NGS-eval: NGS Error analysis and novel sequence VAriant detection tooL

  • Nucleic Acids Research
  • April 2015

Competition between surface adsorption and folding of fibril-forming polypeptides

  • Physical Review E
  • February 2015

Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simula...

  • Bioinformatics
  • February 2014

A Simple Lattice Model That Captures Protein Folding, Aggregation and Amyloid Formation

  • PLoS ONE
  • January 2014

Coarse-grained versus atomistic simulations: realistic interaction free energies for re...

  • Bioinformatics
  • November 2013

Exploring Fold Space Preferences of New-born and Ancient Protein Superfamilies

  • PLoS Computational Biology
  • November 2013

Interplay between Folding and Assembly of Fibril-Forming Polypeptides

  • Physical Review Letters
  • July 2013

Bioinformatics and Systems Biology: bridging the gap between heterogeneous student back...

  • Briefings in Bioinformatics
  • April 2013

Comparing clustering and pre-processing in taxonomy analysis

  • Bioinformatics
  • September 2012

Correction

  • Biophysical Journal
  • August 2011

Accounting for Protein-Solvent Contacts Facilitates Design of Nonaggregating Lattice Pr...

  • Biophysical Journal
  • February 2011

Multiple alignment of transmembrane protein sequences

  • January 2010

Disordered Flanks Prevent Peptide Aggregation

  • PLoS Computational Biology
  • December 2008

Using Phylogeny to Improve Genome-Wide Distant Homology Recognition

  • PLoS Computational Biology
  • January 2007

Linking evolution of protein structures through fragments

  • BMC Systems Biology
  • January 2007

Fold usage on genomes and protein fold evolution

  • Proteins Structure Function and Bioinformatics
  • July 2005

How old is your fold?

  • Bioinformatics
  • June 2005

Using phylogeny to improve genome wide distant homology recognition

  • PLoS Computational Biology
  • January 2005