Philip Machanick
Rhodes University
Faculty Member, Computer Science
South Africa
My co-authors include
Mr Caleb Kibet
My Publications
The need to consider new strategies for containing the spread of COVID-19 where case co...
F1000Research
May 2020
Transcription factor motif quality assessment requires systematic comparative analysis
F1000Research
March 2016
Transcription factor binding models are best tested for quality by using multiple diffe...
F1000Research
December 2015
How General-Purpose can a GPU be?
South African Computer Journal
December 2015
How to establish a bioinformatics postgraduate degree programme--a case study from Sout...
Briefings in Bioinformatics
May 2014
Motif enrichment compared with that on another DNA sequence set, both derived from ChIP...
BMC Genomics
January 2014
Inferring direct DNA binding from ChIP-seq
Nucleic Acids Research
May 2012
Identification of molecular compartments and genetic circuitry in the developing mammal...
Development
April 2012
MEME-ChIP: motif analysis of large DNA datasets
Bioinformatics
April 2011
Computer-based devices are not just about software but about sensing what is around them.
January 2011
The value of position-specific priors in motif discovery using MEME
BMC Bioinformatics
January 2010
Analysis of Kernel Effects on Optimisation Mismatch in Cache Reconfiguration
August 2007
Dynamic Cache Switching in Reconfigurable Embedded Systems
August 2007
Teaching Java backwards
Computers & Education
April 2007
How to understand computer science education as more than cognitive skills
Computer Science Education
March 2007
Design principles for a virtual multiprocessor
January 2007
SMP-SoC is the answer if you ask the right questions
January 2006
SecureTorrent: A Security Framework for File Swarming
January 2006
The Value of a Small Microkernel for Dreamy Memory and the RAMpage Memory Hierarchy
Journal of Computer Science and Technology
September 2005
A distributed systems approach to secure Internet mail
Computers & Security
September 2005
Initial Experiences with Dreamy Memory and the RAMpage Memory Hierarchy
January 2004
Principles versus artifacts in computer science curriculum design
Computers & Education
September 2003
L1 Cache and TLB Enhancements to the RAMpage Memory Hierarchy
January 2003
Latency Improvement in Virtual Multicasting
January 2003
Programming early considered harmful
ACM SIGCSE Bulletin
March 2001
Programming early considered harmful
January 2001
Curriculum 2020
January 2000
Correction to RAMpage ASPOLOS paper
ACM SIGARCH Computer Architecture News
September 1999
Streaming vs.latency in information mass-transit
ACM SIGARCH Computer Architecture News
December 1998
Hardware-software trade-offs in a direct Rambus implementation of the RAMpage memory hi...
ACM SIGOPS Operating Systems Review
December 1998
Hardware-software trade-offs in a direct Rambus implementation of the RAMpage memory hi...
ACM SIGPLAN Notices
November 1998
The abstraction-first approach to data abstraction and algorithms
Computers & Education
September 1998
Hardware-software trade-offs in a direct Rambus implementation of the RAMpage memory hi...
January 1998
The case for SRAM main memory
ACM SIGARCH Computer Architecture News
December 1996
Restructuring a parallel simulation to improve cache behavior in a shared-memory multip...
ACM SIGSIM Simulation Digest
July 1993
Restructuring a parallel simulation to improve cache behavior in a shared-memory multip...
January 1993
Introductory readings in expert systems
Artificial Intelligence
December 1986
Are LR parsers too powerful?
ACM SIGPLAN Notices
June 1986
The case for simplified languages
ACM SIGPLAN Notices
March 1985
A note on C. S. Wetherell's "Problems with the Ada reference grammar"
ACM SIGPLAN Notices
May 1983
The effect of first-level cache improvements on the RAMpage memory hierarchy
