All Stories

  1. Enhancing Image Quality in Dental-Maxillofacial CBCT: The Impact of Iterative Reconstruction and AI on Noise Reduction—A Systematic Review

    Article • Journal of Clinical Medicine, June 2025, MDPI AG

    Pawel Dabrowski-Tumanski

  2. Theta‐curves in proteins

    Article • Protein Science, August 2024, Wiley

    Pawel Dabrowski-Tumanski

  3. AlphaFold Blindness to Topological Barriers Affects Its Ability to Correctly Predict Proteins’ Topology

    Article • Molecules, November 2023, MDPI AG

    Pawel Dabrowski-Tumanski

  4. AlphaFold Blindness to Topological Barriers Affects Its Ability to Correctly Predict Proteins’ Topology

    Article • August 2023, MDPI AG

    Pawel Dabrowski-Tumanski

  5. Lasso Proteins—Unifying Cysteine Knots and Miniproteins

    Article • Polymers, November 2021, MDPI AG

    Pawel Dabrowski-Tumanski

  6. A Topological Selection of Folding Pathways from Native States of Knotted Proteins

    Article • Symmetry, September 2021, MDPI AG

    Pawel Dabrowski-Tumanski

  7. Molecule Edit Graph Attention Network: Modeling Chemical Reactions as Sequences of Graph Edits

    Article • Journal of Chemical Information and Modeling, July 2021, American Chemical Society (ACS)

    Pawel Dabrowski-Tumanski

  8. Topoly: Python package to analyze topology of polymers

    Article • Briefings in Bioinformatics, September 2020, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski

  9. Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function

    Article • Polymers, April 2019, MDPI AG

    Pawel Dabrowski-Tumanski

  10. PyLink: a PyMOL plugin to identify links

    Article • Bioinformatics, January 2019, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski

  11. KnotProt 2.0: a database of proteins with knots and other entangled structures

    Article • Nucleic Acids Research, December 2018, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski, Eric Rawdon

  12. Genus trace reveals the topological complexity and domain structure of biomolecules

    Article • Scientific Reports, December 2018, Springer Science + Business Media

    Pawel Dabrowski-Tumanski

  13. The APS-bracket – A topological tool to classify lasso proteins, RNAs and other tadpole-like structures

    Article • Reactive and Functional Polymers, November 2018, Elsevier

    Pawel Dabrowski-Tumanski

  14. Protein Knotting by Active Threading of Nascent Polypeptide Chain Exiting from the Ribosome Exit Channel

    Article • The Journal of Physical Chemistry B, October 2018, American Chemical Society (ACS)

    Pawel Dabrowski-Tumanski

  15. A server to model a gap in a protein structure and to assess its the topological correctness.

    Article • Bioinformatics, April 2018, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski

  16. The folding pathways of gordian knotted proteins and its dependence of confinement.

    Article • PLoS Computational Biology, March 2018, PLOS

    Pawel Dabrowski-Tumanski

  17. The Exclusive Effects of Chaperonin on the Free Energy Landscape of Proteins with Complex Knots

    Article • Biophysical Journal, February 2018, Elsevier

    Pawel Dabrowski-Tumanski

  18. Review treating about various kinds of entanglement in proteins.

    Article • Polymers, September 2017, MDPI AG

    Pawel Dabrowski-Tumanski

  19. A plugin for PyMol software enabling for analysis of lasso structures in proteins.

    Article • Bioinformatics, August 2017, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski

  20. Are there links in proteins? Yes there are.

    Article • Proceedings of the National Academy of Sciences, March 2017, Proceedings of the National Academy of Sciences

    Pawel Dabrowski-Tumanski

  21. Proteins with the shape of (pierced) lasso.

    Article • Scientific Reports, November 2016, Springer Science + Business Media

    Pawel Dabrowski-Tumanski

  22. What is the advantage of knots for proteins?

    Article • PLOS One, November 2016, PLOS

    Pawel Dabrowski-Tumanski

  23. A database collecting information about links in proteins.

    Article • Nucleic Acids Research, October 2016, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski, Eric Rawdon

  24. A database containing information about proteins with the lasso shape.

    Article • Nucleic Acids Research, April 2016, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski

  25. How does the self-tying of the smallest knotted protein depend on contact map?

    Article • Journal of Physics Condensed Matter, August 2015, Institute of Physics Publishing

    Pawel Dabrowski-Tumanski

  26. A fast and simple method enabling synthesis of nucleotide sugars.

    Article • European Journal of Organic Chemistry, February 2013, Wiley

    Professor Jacek Jemielity, Pawel Dabrowski-Tumanski

  27. Synthesis of nucleotide sugars and nucleoside 5'-phosphosulfates by MgCl2 mediated coupling

    Article • January 2011, Institute of Organic Chemistry & Biochemistry

    Pawel Dabrowski-Tumanski