All Stories

  1. Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function

    Article • Polymers, April 2019, MDPI AG

    Pawel Dabrowski-Tumanski

  2. PyLink: a PyMOL plugin to identify links

    Article • Bioinformatics, January 2019, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski

  3. KnotProt 2.0: a database of proteins with knots and other entangled structures

    Article • Nucleic Acids Research, December 2018, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski, Eric Rawdon

  4. Genus trace reveals the topological complexity and domain structure of biomolecules

    Article • Scientific Reports, December 2018, Springer Science + Business Media

    Pawel Dabrowski-Tumanski

  5. The APS-bracket – A topological tool to classify lasso proteins, RNAs and other tadpole-like structures

    Article • Reactive and Functional Polymers, November 2018, Elsevier

    Pawel Dabrowski-Tumanski

  6. Protein Knotting by Active Threading of Nascent Polypeptide Chain Exiting from the Ribosome Exit Channel

    Article • The Journal of Physical Chemistry B, October 2018, American Chemical Society (ACS)

    Pawel Dabrowski-Tumanski

  7. A server to model a gap in a protein structure and to assess its the topological correctness.

    Article • Bioinformatics, April 2018, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski

  8. The folding pathways of gordian knotted proteins and its dependence of confinement.

    Article • PLoS Computational Biology, March 2018, PLOS

    Pawel Dabrowski-Tumanski

  9. The Exclusive Effects of Chaperonin on the Free Energy Landscape of Proteins with Complex Knots

    Article • Biophysical Journal, February 2018, Elsevier

    Pawel Dabrowski-Tumanski

  10. Review treating about various kinds of entanglement in proteins.

    Article • Polymers, September 2017, MDPI AG

    Pawel Dabrowski-Tumanski

  11. A plugin for PyMol software enabling for analysis of lasso structures in proteins.

    Article • Bioinformatics, August 2017, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski

  12. Are there links in proteins? Yes there are.

    Article • Proceedings of the National Academy of Sciences, March 2017, Proceedings of the National Academy of Sciences

    Pawel Dabrowski-Tumanski

  13. Proteins with the shape of (pierced) lasso.

    Article • Scientific Reports, November 2016, Springer Science + Business Media

    Pawel Dabrowski-Tumanski

  14. What is the advantage of knots for proteins?

    Article • PLoS ONE, November 2016, PLOS

    Pawel Dabrowski-Tumanski

  15. A database collecting information about links in proteins.

    Article • Nucleic Acids Research, October 2016, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski, Eric Rawdon

  16. A database containing information about proteins with the lasso shape.

    Article • Nucleic Acids Research, April 2016, Oxford University Press (OUP)

    Pawel Dabrowski-Tumanski

  17. How does the self-tying of the smallest knotted protein depend on contact map?

    Article • Journal of Physics Condensed Matter, August 2015, Institute of Physics Publishing

    Pawel Dabrowski-Tumanski

  18. A fast and simple method enabling synthesis of nucleotide sugars.

    Article • European Journal of Organic Chemistry, February 2013, Wiley

    Professor Jacek Jemielity, Pawel Dabrowski-Tumanski

  19. Synthesis of nucleotide sugars and nucleoside 5'-phosphosulfates by MgCl2 mediated coupling

    Article • January 2011, Institute of Organic Chemistry & Biochemistry

    Pawel Dabrowski-Tumanski