All Stories

  1. Faster turnover of taxonomic over functional bacterial composition during vermicomposting indicates increasing functional redundancy

    Article • PLOS One, July 2026, PLOS

    Professor Keith A Crandall

  2. Acute Exercise-Induced Changes in Gut Microbiome Composition, Function, and Gut-Derived Stool and Plasma Metabolome Across Obesity Phenotypes in Young-Adult Women: A Pilot Study Protocol

    Article • July 2026, openRxiv

    Professor Keith A Crandall

  3. Mobile DNA Activity in Parkinson’s Disease: A Locus-Specific View of Endogenous Retroviruses

    Article • July 2026, openRxiv

    Professor Keith A Crandall

  4. seqLens: Optimizing Language Models for Genomic Predictions

    Article • Molecular Biology and Evolution, June 2026, Oxford University Press (OUP)

    Professor Keith A Crandall

  5. Overcoming taxonomic anxiety in conservation: A roadmap from the idle crayfish case

    Article • Conservation Science and Practice, April 2026, Wiley

    Professor Keith A Crandall

  6. Phylogenetically‐Informed Crayfish Conservation in the Face of Climate Change

    Article • Animal Conservation, February 2026, Wiley

    Professor Keith A Crandall

  7. Guided tokenization and domain knowledge enhance genomic language models’ performance

    Article • February 2026, openRxiv

    Professor Keith A Crandall

  8. SARS-CoV-2 wastewater genomic surveillance: approaches, challenges, and opportunities

    Article • Genome Biology, January 2026, Springer Science + Business Media

    Professor Keith A Crandall

  9. deepBreaks identifies and prioritizes genotype–phenotype associations using machine learning

    Article • Scientific Reports, November 2025, Springer Science + Business Media

    Professor Keith A Crandall

  10. Curating 16S rRNA databases enhances taxonomic accuracy and computational efficiency in microbial profiling

    Article • November 2025, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  11. Locus-specific HERV expression associated with hepatocellular carcinoma

    Article • Mobile DNA, July 2025, Springer Science + Business Media

    Professor Keith A Crandall

  12. resLens: genomic language models to enhance antibiotic resistance gene detection

    Article • July 2025, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  13. Phylogenetically-informed crayfish conservation in the face of climate change

    Article • June 2025, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  14. Microbial metabolite ammonia disrupts TGF-β signaling to promote colon cancer

    Article • Journal of Biological Chemistry, June 2025, Elsevier

    Dr. Taj Mohammad, Professor Keith A Crandall

  15. seqLens: optimizing language models for genomic predictions

    Article • March 2025, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  16. Analysis of metagenomic data

    Article • Nature Reviews Methods Primers, January 2025, Springer Science + Business Media

    Professor Keith A Crandall

  17. One-quarter of freshwater fauna threatened with extinction

    Article • Nature, January 2025, Springer Science + Business Media

    Professor Keith A Crandall

  18. Machine learning enhances biomarker discovery: From multi- omics to functional genomics.

    Article • Medical Research Archives, January 2025, Knowledge Enterprise Journals

    Professor Keith A Crandall

  19. Aldehydes alter TGF-β signaling and induce obesity and cancer

    Article • Cell Reports, September 2024, Elsevier

    Professor Keith A Crandall

  20. Pediatric urinary tract infections caused by poultry-associated Escherichia coli

    Article • Microbiology Spectrum, July 2024, ASM Journals

    Professor Keith A Crandall

  21. High-throughput RNA-Seq and In-silico analysis ofglioblastoma cells treated with cold atmosphericplasma and temozolomide.

    Article • July 2024, Springer Science + Business Media

    Professor Keith A Crandall

  22. High-throughput RNA-Seq and In-silico analysis of glioblastoma cells treated with cold atmospheric plasma and temozolomide.

    Article • June 2024, Springer Science + Business Media

    Professor Keith A Crandall

  23. A link between evolution and society fostering the UN sustainable development goals

    Article • Evolutionary Applications, June 2024, Wiley

    Professor Keith A Crandall

  24. Genome sequence of white spot syndrome virus (WSSV) infecting cultured black tiger shrimp ( Penaeus monodon ) in Bangladesh

    Article • Microbiology Resource Announcements, April 2024, ASM Journals

    Professor Keith A Crandall

  25. November 2023 international forum on species in Haikou, China

    Article • Oryx, March 2024, Cambridge University Press

    Manfredo Turcios, Professor Keith A Crandall

  26. Hospital antimicrobial stewardship: profiling the oral microbiome after exposure to COVID-19 and antibiotics

    Article • Frontiers in Microbiology, February 2024, Frontiers

    Professor Keith A Crandall

  27. Discovering genotype-phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)

    Article • February 2024, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  28. Estimating rare disease prevalence and costs in the USA: a cohort study approach using the Healthcare Cost Institute claims data

    Article • BMJ Public Health, February 2024, BMJ

    Professor Keith A Crandall

  29. Discovering genotype–phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)

    Article • GigaScience, January 2024, Oxford University Press (OUP)

    Professor Keith A Crandall

  30. Consumption of sucralose- and acesulfame-potassium-containing diet soda alters the relative abundance of microbial taxa at the species level: findings of two pilot studies

    Article • Applied Physiology Nutrition and Metabolism, January 2024, Canadian Science Publishing

    Professor Keith A Crandall

  31. Convergent adaptation of true crabs (Decapoda: Brachyura) to a gradient of terrestrial environments

    Article • Systematic Biology, November 2023, Oxford University Press (OUP)

    Dr Joanna M Wolfe, Professor Keith A Crandall

  32. Spatial diversity of the skin bacteriome

    Article • Frontiers in Microbiology, September 2023, Frontiers

    Professor Keith A Crandall

  33. Amphibian myelopoiesis

    Article • Developmental & Comparative Immunology, September 2023, Elsevier

    Professor Keith A Crandall

  34. Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

    Article • Scientific Reports, August 2023, Springer Science + Business Media

    Professor Keith A Crandall

  35. Major Revisions in Pancrustacean Phylogeny and Evidence of Sensitivity to Taxon Sampling

    Article • Molecular Biology and Evolution, August 2023, Oxford University Press (OUP)

    Dr Joanna M Wolfe, Professor Keith A Crandall

  36. Benchmarking global biodiversity of decapod crustaceans (Crustacea: Decapoda)

    Article • Journal of Crustacean Biology, August 2023, Oxford University Press (OUP)

    Professor Keith A Crandall

  37. Locus specific endogenous retroviral expression associated with Alzheimer’s disease

    Article • Frontiers in Aging Neuroscience, July 2023, Frontiers

    Professor Keith A Crandall

  38. Oncogenic Transformation Drives DNA Methylation Loss and Transcriptional Activation at Transposable Element Loci

    Article • Cancer Research, May 2023, American Association for Cancer Research (AACR)

    Professor Keith A Crandall

  39. Data from Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon Cancers

    Article • March 2023, American Association for Cancer Research (AACR)

    Professor Keith A Crandall

  40. Data from Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon Cancers

    Article • March 2023, American Association for Cancer Research (AACR)

    Professor Keith A Crandall

  41. Supplementary Data from Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon Cancers

    Article • March 2023, American Association for Cancer Research (AACR)

    Professor Keith A Crandall

  42. Supplementary Data from Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon Cancers

    Article • March 2023, American Association for Cancer Research (AACR)

    Professor Keith A Crandall

  43. Abnormalities in intron retention characterize patients with systemic lupus erythematosus

    Article • Scientific Reports, March 2023, Springer Science + Business Media

    Professor Keith A Crandall

  44. Corrigendum regarding the professional affiliation of a co-author

    Article • Crustaceana, February 2023, Brill

    Patricio De los Rios, Professor Keith A Crandall

  45. deepBreaks: a Machine Learning Tool for Identifying and Prioritizing Genotype-phenotype Associations

    Article • February 2023, Springer Science + Business Media

    Professor Keith A Crandall

  46. Therapeutic beta-lactam dosages and broad-spectrum antibiotics are associated with reductions in microbial richness and diversity in persons with cystic fibrosis

    Article • Scientific Reports, January 2023, Springer Science + Business Media

    Professor Keith A Crandall

  47. Using metabolic potential within the airway microbiome as predictors of clinical state in persons with cystic fibrosis

    Article • Frontiers in Medicine, January 2023, Frontiers

    Professor Keith A Crandall

  48. Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States

    Article • Viruses, December 2022, MDPI AG

    Professor Keith A Crandall

  49. Distributional patterns of the South American species of Parastacidae (Decapoda, Astacidea)

    Article • Crustaceana, December 2022, De Gruyter

    Professor Keith A Crandall

  50. Convergent adaptation of true crabs (Decapoda: Brachyura) to a gradient of terrestrial environments

    Article • December 2022, Cold Spring Harbor Laboratory Press

    Dr Joanna M Wolfe, Professor Keith A Crandall

  51. Impact of Fecal Microbiota Transplantation on Gut Bacterial Bile Acid Metabolism in Humans

    Article • Nutrients, December 2022, MDPI AG

    Dr Benjamin Mullish, Professor Keith A Crandall

  52. Hospital Antimicrobial Stewardship: Non-Bacterial Saliva Microbiome Emerges as a Biomarker of COVID-19 Severity

    Article • December 2022, Springer Science + Business Media

    Professor Keith A Crandall

  53. Major revisions in pancrustacean phylogeny with recommendations for resolving challenging nodes

    Article • November 2022, Cold Spring Harbor Laboratory Press

    Dr Joanna M Wolfe, Professor Keith A Crandall

  54. Source and acquisition of rhizosphere microbes in Antarctic vascular plants

    Article • Frontiers in Microbiology, September 2022, Frontiers

    Professor Keith A Crandall

  55. Impact of Antibiotics on the Lung Microbiome and Lung Function in Children With Cystic Fibrosis 1 Year After Hospitalization for an Initial Pulmonary Exacerbation

    Article • Open Forum Infectious Diseases, September 2022, Oxford University Press (OUP)

    Professor Keith A Crandall

  56. The HIV Latency Reversal Agent HODHBt Enhances NK Cell Effector and Memory-Like Functions by Increasing Interleukin-15-Mediated STAT Activation

    Article • Journal of Virology, August 2022, ASM Journals

    Professor Keith A Crandall

  57. Grapevine treatment with bagasse vermicompost changes the microbiome of Albariño must and wine and improves wine quality

    Article • OENO One, August 2022, Universite de Bordeaux

    Professor Keith A Crandall

  58. Host taxonomy determines the composition, structure, and diversity of the earthworm cast microbiome under homogenous feeding conditions

    Article • FEMS Microbiology Ecology, August 2022, Oxford University Press (OUP)

    Professor Keith A Crandall

  59. Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data

    Article • July 2022, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  60. Integrated Fertilization with Bagasse Vermicompost Changes the Microbiome of Mencía Must and Wine

    Article • Fermentation, July 2022, MDPI AG

    Professor Keith A Crandall

  61. Metabolite, protein, and tissue dysfunction associated with COVID-19 disease severity

    Article • Scientific Reports, July 2022, Springer Science + Business Media

    Professor Keith A Crandall

  62. Induction of mastitis by cow-to-mouse fecal and milk microbiota transplantation causes microbiome dysbiosis and genomic functional perturbation in mice

    Article • Animal Microbiome, July 2022, Springer Science + Business Media

    Professor Keith A Crandall

  63. The Origin, Epidemiology, and Phylodynamics of Human Immunodeficiency Virus Type 1 CRF47_BF

    Article • Frontiers in Microbiology, May 2022, Frontiers

    Professor Keith A Crandall

  64. Composition, Structure and Diversity of Soil Bacterial Communities before, during and after Transit through the Gut of the Earthworm Aporrectodea caliginosa

    Article • Microorganisms, May 2022, MDPI AG

    Professor Keith A Crandall

  65. Comparative Analysis of Metagenomics and Metataxonomics for the Characterization of Vermicompost Microbiomes

    Article • Frontiers in Microbiology, May 2022, Frontiers

    Professor Keith A Crandall

  66. Unlocking capacities of genomics for the COVID-19 response and future pandemics

    Article • Nature Chemical Biology, April 2022, Springer Science + Business Media

    Professor Keith A Crandall

  67. Association of Early Aspirin Use With In-Hospital Mortality in Patients With Moderate COVID-19

    Article • JAMA Network Open, March 2022, American Medical Association (AMA)

    Professor Keith A Crandall

  68. The origin, epidemiology and phylodynamics of HIV-1 CRF47_BF

    Article • March 2022, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  69. The Earth BioGenome Project 2020: Starting the clock

    Article • Proceedings of the National Academy of Sciences, January 2022, Proceedings of the National Academy of Sciences

    Professor Keith A Crandall

  70. Standards recommendations for the Earth BioGenome Project

    Article • Proceedings of the National Academy of Sciences, January 2022, Proceedings of the National Academy of Sciences

    Professor Keith A Crandall, Dr Sunil Kumar Sahu

  71. Why sequence all eukaryotes?

    Article • Proceedings of the National Academy of Sciences, January 2022, Proceedings of the National Academy of Sciences

    Professor Keith A Crandall

  72. Anchored hybrid enrichment resolves the phylogeny ofLacunicambarusHobbs, 1969 (Decapoda: Astacidea: Cambaridae)

    Article • Journal of Crustacean Biology, January 2022, Oxford University Press (OUP)

    Professor Keith A Crandall

  73. Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes

    Article • GigaScience, January 2022, Oxford University Press (OUP)

    Professor Keith A Crandall

  74. SARS-CoV-2 infection reduces human nasopharyngeal commensal microbiome with inclusion of pathobionts

    Article • Scientific Reports, December 2021, Springer Science + Business Media

    Professor Keith A Crandall

  75. Metabolite, Protein, And Tissue Dysfunction Associated With COVID-19 Disease Severity

    Article • November 2021, Research Square

    Professor Keith A Crandall

  76. Epidemiological associations with genomic variation in SARS-CoV-2

    Article • Scientific Reports, November 2021, Springer Science + Business Media

    Professor Keith A Crandall

  77. Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative

    Article • Journal of the American Medical Informatics Association, November 2021, Oxford University Press (OUP)

    Professor Keith A Crandall

  78. Associations between HIV infection and clinical spectrum of COVID-19: a population level analysis based on US National COVID Cohort Collaborative (N3C) data

    Article • The Lancet HIV, November 2021, Elsevier

    Roslyn Mannon, Professor Keith A Crandall

  79. Dominant clade‐featured SARS‐CoV‐2 co‐occurring mutations reveal plausible epistasis: An in silico based hypothetical model

    Article • Journal of Medical Virology, November 2021, Wiley

    Professor Keith A Crandall

  80. The HIV latency reversal agent HODHBt enhances NK Cell effector and memory-like functions by increasing IL-15 mediated-STAT activation

    Article • October 2021, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  81. Author Correction: Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity

    Article • Scientific Reports, October 2021, Springer Science + Business Media

    Professor Keith A Crandall

  82. Importance of beta-lactam pharmacokinetics and pharmacodynamics on the recovery of microbial diversity in the airway of persons with cystic fibrosis

    Article • Journal of Investigative Medicine, October 2021, SAGE Publications

    Professor Keith A Crandall

  83. A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism

    Article • PeerJ, August 2021, PeerJ

    Professor Keith A Crandall

  84. The genus Creaserinus Hobbs, 1973 (Decapoda: Cambaridae) in Texas

    Article • Zootaxa, August 2021, Magnolia Press

    Professor Keith A Crandall

  85. Earthworms drastically change fungal and bacterial communities during vermicomposting of sewage sludge

    Article • Scientific Reports, July 2021, Springer Science + Business Media

    Professor Keith A Crandall

  86. Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies

    Article • Systematic Biology, July 2021, Oxford University Press (OUP)

    Professor Keith A Crandall

  87. COVID-19 Disease Severity among People with HIV Infection or Solid Organ Transplant in the United States: A Nationally-representative, Multicenter, Observational Cohort Study

    Article • July 2021, Cold Spring Harbor Laboratory Press

    Roslyn Mannon, Professor Keith A Crandall

  88. Impact of Anaerobic Antibacterial Spectrum on Cystic Fibrosis Airway Microbiome Diversity and Pulmonary Function

    Article • The Pediatric Infectious Disease Journal, July 2021, Wolters Kluwer Health

    Professor Keith A Crandall

  89. COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model

    Article • Briefings in Bioinformatics, May 2021, Oxford University Press (OUP)

    Professor Keith A Crandall

  90. Omics community detection using multi-resolution clustering

    Article • Bioinformatics, May 2021, Oxford University Press (OUP)

    Professor Keith A Crandall

  91. SARS-CoV-2 Infection Reduces Human Nasopharyngeal Commensal Microbiome with Inclusion of Pathobionts

    Article • May 2021, Springer Science + Business Media

    Professor Keith A Crandall

  92. Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon Cancers

    Article • Cancer Research, May 2021, American Association for Cancer Research (AACR)

    Professor Keith A Crandall

  93. Expression of Human Endogenous Retroviruses in Systemic Lupus Erythematosus: Multiomic Integration With Gene Expression

    Article • Frontiers in Immunology, April 2021, Frontiers

    Professor Keith A Crandall

  94. Entangled Aeglidae (Decapoda, Anomura): Additional evidence for cryptic species

    Article • Zoologica Scripta, March 2021, Wiley

    Dr Sandro Santos, Professor Keith A Crandall

  95. Inflammation in children with cystic fibrosis: contribution of bacterial production of long-chain fatty acids

    Article • Pediatric Research, March 2021, Springer Science + Business Media

    Professor Keith A Crandall

  96. The evolutionary diversity of barnacles, with an updated classification of fossil and living forms

    Article • Zoological Journal of the Linnean Society, February 2021, Oxford University Press (OUP)

    Professor Keith A Crandall

  97. Dominant Clade-featured SARS-CoV-2 Co-occurring Mutations Reveals Plausible Epistasis: An in silico based Hypothetical Model

    Article • February 2021, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  98. Felsenstein Phylogenetic Likelihood

    Article • Journal of Molecular Evolution, January 2021, Springer Science + Business Media

    Professor Keith A Crandall

  99. SARS-CoV-2 Infection Reduces Human Nasopharyngeal Commensal Microbiome With Inclusion of Pathobionts

    Article • SSRN Electronic Journal, January 2021, Elsevier

    Professor Keith A Crandall

  100. HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intrahost Viral Populations

    Article • Molecular Biology and Evolution, December 2020, Oxford University Press (OUP)

    Professor Keith A Crandall

  101. Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics

    Article • Molecular Ecology Resources, November 2020, Wiley

    Professor Keith A Crandall

  102. Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank

    Article • Journal of the American Medical Informatics Association, November 2020, Oxford University Press (OUP)

    Professor Keith A Crandall

  103. Microbiome dynamics and genomic determinants of bovine mastitis

    Article • Genomics, November 2020, Elsevier

    Mr. RAFIUL Islam Ranga, Professor Keith A Crandall

  104. Diversity and genomic determinants of the microbiomes associated with COVID-19 and non-COVID respiratory diseases

    Article • October 2020, openRxiv

    Professor Keith A Crandall

  105. Each patient is a research biorepository: Informatics-enabled research on surplus clinical specimens via the Living BioBank

    Article • September 2020, openRxiv

    Professor Keith A Crandall

  106. COVID-19 Biomarkers in research: Extension of the OncoMX cancer biomarker data model to capture biomarker data from other diseases

    Article • September 2020, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  107. Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival

    Article • Viruses, August 2020, MDPI AG

    Professor Keith A Crandall

  108. Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity

    Article • Scientific Reports, August 2020, Springer Science + Business Media

    Mr. RAFIUL Islam Ranga, Professor Keith A Crandall

  109. The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment

    Article • Journal of the American Medical Informatics Association, August 2020, Oxford University Press (OUP)

    Megan Coffee, Professor Casey Greene, Professor Keith A Crandall

  110. Evaluation of computational methods for human microbiome analysis using simulated data

    Article • PeerJ, August 2020, PeerJ

    Professor Keith A Crandall

  111. Evaluation of haplotype callers for next-generation sequencing of viruses

    Article • Infection Genetics and Evolution, August 2020, Elsevier

    Professor Keith A Crandall

  112. Epitope-based chimeric peptide vaccine design against S, M and E proteins of SARS-CoV-2 etiologic agent of global pandemic COVID-19: an in silico approach

    Article • PeerJ, July 2020, PeerJ

    Mr. RAFIUL Islam Ranga, Professor Keith A Crandall

  113. Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses

    Article • Viruses, July 2020, MDPI AG

    Professor Keith A Crandall

  114. Hemiptera phylogenomic resources: Tree‐based orthology prediction and conserved exon identification

    Article • Molecular Ecology Resources, July 2020, Wiley

    Professor Keith A Crandall

  115. Microbiome Dynamics of Bovine Mastitis Progression and Genomic Determinants

    Article • July 2020, openRxiv

    Professor Keith A Crandall

  116. Deep ancestral introgression shapes evolutionary history of dragonflies and damselflies

    Article • June 2020, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  117. Insights Into the Resistome of Bovine Clinical Mastitis Microbiome, a Key Factor in Disease Complication

    Article • Frontiers in Microbiology, June 2020, Frontiers

    Professor Keith A Crandall

  118. Airway microbial diversity is decreased in young children with cystic fibrosis compared to healthy controls but improved with CFTR modulation

    Article • Heliyon, June 2020, Elsevier

    Professor Keith A Crandall

  119. Variants in the Kisspeptin-GnRH Pathway Modulate the Hormonal Profile and Reproductive Outcomes

    Article • DNA and Cell Biology, June 2020, Mary Ann Liebert Inc

    Professor Keith A Crandall

  120. Drug Resistance Prediction Using Deep Learning Techniques on HIV-1 Sequence Data

    Article • Viruses, May 2020, MDPI AG

    Professor Keith A Crandall

  121. Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

    Article • Proceedings of the National Academy of Sciences, May 2020, Proceedings of the National Academy of Sciences

    Professor Keith A Crandall

  122. Consumption of Diet Soda Sweetened with Sucralose and Acesulfame‐Potassium Alters Inflammatory Transcriptome Pathways in Females with Overweight and Obesity

    Article • Molecular Nutrition & Food Research, May 2020, Wiley

    Curtis Henry, Professor Keith A Crandall

  123. Bacterial Functional Profiling of the Cystic Fibrosis Airway Across Clinical States

    Article • May 2020, American Thoracic Society

    Professor Keith A Crandall

  124. Longitudinal Associations of the Cystic Fibrosis Airway Microbiome and Volatile Metabolites: A Case Study

    Article • Frontiers in Cellular and Infection Microbiology, April 2020, Frontiers

    Professor Keith A Crandall

  125. Author Correction: A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing

    Article • Scientific Reports, April 2020, Springer Science + Business Media

    Professor Keith A Crandall

  126. Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

    Article • Scientific Reports, April 2020, Springer Science + Business Media

    Professor Keith A Crandall

  127. The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

    Article • Trends in Cancer, March 2020, Elsevier

    Dr. Daniel J Slade, Professor Keith A Crandall

  128. Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics

    Article • February 2020, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  129. A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing

    Article • Scientific Reports, February 2020, Springer Science + Business Media

    Professor Keith A Crandall

  130. Independent Losses of the Hypoxia-Inducible Factor (HIF) Pathway within Crustacea

    Article • Molecular Biology and Evolution, January 2020, Oxford University Press (OUP)

    Professor Keith A Crandall

  131. Mutated CEACAMs Disrupt Transforming Growth Factor Beta Signaling and Alter the Intestinal Microbiome to Promote Colorectal Carcinogenesis

    Article • Gastroenterology, January 2020, Elsevier

    Dr. Taj Mohammad, Professor Keith A Crandall

  132. Testing the “Grandma Hypothesis”: Characterizing Skin Microbiome Diversity as a Project-Based Learning Approach to Genomics

    Article • Journal of Microbiology and Biology Education, January 2020, ASM Journals

    Professor Keith A Crandall

  133. A new molecular phylogeny-based taxonomy of parasitic barnacles (Crustacea: Cirripedia: Rhizocephala)

    Article • Zoological Journal of the Linnean Society, November 2019, Oxford University Press (OUP)

    Professor Keith A Crandall

  134. Claw asymmetry in crabs: approaching an old issue from a new point of view

    Article • Biological Journal of the Linnean Society, November 2019, Oxford University Press (OUP)

    Professor Keith A Crandall

  135. Corrigendum: A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC

    Article • Frontiers in Microbiology, November 2019, Frontiers

    Professor Keith A Crandall

  136. Resistome diversity in bovine clinical mastitis microbiome, a signature concurrence

    Article • November 2019, openRxiv

    Professor Keith A Crandall

  137. Evaluation of haplotype callers for next-generation sequencing of viruses

    Article • November 2019, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  138. Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

    Article • October 2019, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  139. Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus

    Article • Proceedings of the National Academy of Sciences, October 2019, Proceedings of the National Academy of Sciences

    Professor Keith A Crandall

  140. Schizophrenia risk from locus-specific human endogenous retroviruses

    Article • October 2019, openRxiv

    Professor Keith A Crandall

  141. ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data

    Article • Bioinformatics, October 2019, Oxford University Press (OUP)

    Professor Krasimira Tsaneva-Atanasova, Professor Keith A Crandall

  142. Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression

    Article • PLoS Computational Biology, September 2019, PLOS

    Professor Keith A Crandall

  143. Metagenomic deep sequencing reveals association of microbiome signature with functional biases in bovine mastitis

    Article • Scientific Reports, September 2019, Springer Science + Business Media

    Professor Keith A Crandall

  144. Baseline human gut microbiota profile in healthy people and standard reporting template

    Article • PLOS One, September 2019, PLOS

    Professor Keith A Crandall

  145. Fecal Transplant in Children With Clostridioides difficile Gives Sustained Reduction in Antimicrobial Resistance and Potential Pathogen Burden

    Article • Open Forum Infectious Diseases, August 2019, Oxford University Press (OUP)

    Professor Keith A Crandall

  146. Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution

    Article • PeerJ, August 2019, PeerJ

    Professor Keith A Crandall

  147. Machine learning approaches to predict lupus disease activity from gene expression data

    Article • Scientific Reports, July 2019, Springer Science + Business Media

    Professor Keith A Crandall

  148. Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health

    Article • Scientific Reports, May 2019, Springer Science + Business Media

    Professor Keith A Crandall

  149. Young Children with Cystic Fibrosis Have Decreased Airway Microbial Diversity Compared to Healthy Controls of Similar Age

    Article • May 2019, American Thoracic Society

    Professor Keith A Crandall

  150. A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans

    Article • Proceedings of the Royal Society B Biological Sciences, April 2019, Royal Society Publishing

    Dr Joanna M Wolfe, Professor Keith A Crandall

  151. Transcriptome patterns in hidradenitis suppurativa: support for the role of antimicrobial peptides and interferon pathways in disease pathogenesis

    Article • Clinical and Experimental Dermatology, April 2019, Wiley

    Professor Keith A Crandall

  152. Association of milk microbiome in bovine clinical mastitis and their functional implications in cows in Bangladesh

    Article • April 2019, openRxiv

    Professor Keith A Crandall

  153. A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC

    Article • Frontiers in Microbiology, March 2019, Frontiers

    Professor Keith A Crandall

  154. Changes in microbiome diversity following beta-lactam antibiotic treatment are associated with therapeutic versus subtherapeutic antibiotic exposure in cystic fibrosis

    Article • Scientific Reports, February 2019, Springer Science + Business Media

    Professor Keith A Crandall

  155. Aegla chilota, new species of anomuran freshwater crab from Chiloé Island, western Patagonia

    Article • Nauplius, December 2018, FapUNIFESP (SciELO)

    Professor Keith A Crandall

  156. A phylogenomic framework, evolutionary timeline, and genomic resources for comparative studies of decapod crustaceans

    Article • November 2018, Cold Spring Harbor Laboratory Press

    Dr Joanna M Wolfe, Professor Keith A Crandall

  157. ReQTL – an allele-level measure of variation-expression genomic relationships

    Article • November 2018, Cold Spring Harbor Laboratory Press

    Professor Krasimira Tsaneva-Atanasova, Professor Keith A Crandall

  158. New NSF policy will stifle innovation

    Article • Science, October 2018, American Association for the Advancement of Science

    Professor Keith A Crandall

  159. Baseline human gut microbiota profile in healthy people and standard reporting template

    Article • October 2018, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  160. Pediatric asthma comprises different phenotypic clusters with unique nasal microbiotas

    Article • Microbiome, October 2018, Springer Science + Business Media

    Professor Keith A Crandall

  161. Invasion by non-indigenous freshwater decapods of Malta and Sicily, central Mediterranean Sea

    Article • Journal of Crustacean Biology, September 2018, Oxford University Press (OUP)

    Professor Keith A Crandall

  162. Antibiotic multidrug resistance in the cystic fibrosis airway microbiome is associated with decreased diversity

    Article • Heliyon, September 2018, Elsevier

    Professor Keith A Crandall

  163. Microbial diversity within the airway microbiome in chronic pediatric lung diseases

    Article • Infection Genetics and Evolution, September 2018, Elsevier

    Professor Keith A Crandall

  164. Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression

    Article • August 2018, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  165. De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu

    Article • BMC Genomics, June 2018, Springer Science + Business Media

    Professor Keith A Crandall

  166. Benchmark Evaluation of True Single Molecular Sequencing to Determine Cystic Fibrosis Airway Microbiome Diversity

    Article • Frontiers in Microbiology, May 2018, Frontiers

    Professor Keith A Crandall

  167. The Evolution of Gene Expression Underlying Vision Loss in Cave Animals

    Article • Molecular Biology and Evolution, May 2018, Oxford University Press (OUP)

    Professor Keith A Crandall

  168. Systematic pan-cancer analysis of somatic allele frequency

    Article • Scientific Reports, May 2018, Springer Science + Business Media

    Professor Keith A Crandall

  169. Phototransduction Gene Expression and Evolution in Cave and Surface Crayfishes

    Article • Integrative and Comparative Biology, May 2018, Oxford University Press (OUP)

    Professor Keith A Crandall

  170. Seminal Simian Immunodeficiency Virus in Chronically Infected Cynomolgus Macaques Is Dominated by Virus Originating from Multiple Genital Organs

    Article • Journal of Virology, May 2018, ASM Journals

    Professor Keith A Crandall

  171. Earth BioGenome Project: Sequencing life for the future of life

    Article • Proceedings of the National Academy of Sciences, April 2018, Proceedings of the National Academy of Sciences

    Professor Keith A Crandall

  172. Phylogeography reveals unexpectedly low genetic diversity in a widely distributed species: the case of the freshwater crab Aegla platensis (Decapoda: Anomura)

    Article • Biological Journal of the Linnean Society, February 2018, Oxford University Press (OUP)

    Professor Keith A Crandall

  173. More evolution underground: Accelerated mitochondrial substitution rate in Australian burrowing freshwater crayfishes (Decapoda: Parastacidae)

    Article • Molecular Phylogenetics and Evolution, January 2018, Elsevier

    Professor Keith A Crandall, Professor Chris M Austin

  174. Kisspeptin/GPR54 System and its Role in Human Reproduction

    Article • Cellular Physiology and Biochemistry, January 2018, Karger Publishers

    Dr Bianca Bianco, Professor Keith A Crandall

  175. Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction

    Article • October 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Keith A Crandall

  176. Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs

    Article • October 2017, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Keith A Crandall

  177. Characterization of HIV diversity, phylodynamics and drug resistance in Washington, DC

    Article • PLOS One, September 2017, PLOS

    Professor Keith A Crandall

  178. Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead-end

    Article • Evolution, September 2017, Wiley

    Professor Keith A Crandall, Carlos Pedraza

  179. Overexpressed somatic alleles are enriched in functional elements in Breast Cancer

    Article • Scientific Reports, August 2017, Springer Science + Business Media

    Professor Keith A Crandall

  180. An updated classification of the freshwater crayfishes (Decapoda: Astacidea) of the world, with a complete species list

    Article • Journal of Crustacean Biology, August 2017, Oxford University Press (OUP)

    Professor Keith A Crandall

  181. Looks can be deceiving: species delimitation reveals hidden diversity in the freshwater crab Aegla longirostri (Decapoda: Anomura)

    Article • Zoological Journal of the Linnean Society, July 2017, Oxford University Press (OUP)

    Dr Sandro Santos, Professor Keith A Crandall

  182. Images are not and should not ever be type specimens: a rebuttal to Garraffoni & Freitas

    Article • Zootaxa, May 2017, Magnolia Press

    Professor Keith A Crandall

  183. Transcriptomic effects of dispersed oil in a non-model decapod crustacean

    Article • May 2017, PeerJ

    Professor Keith A Crandall

  184. Transcriptomic effects of dispersed oil in a non-model decapod crustacean

    Article • May 2017, PeerJ

    Professor Keith A Crandall

  185. DNA Barcoding analysis of seafood accuracy in Washington, D.C. restaurants

    Article • PeerJ, April 2017, PeerJ

    Professor Keith A Crandall

  186. Nasopharyngeal Microbiome Diversity Changes over Time in Children with Asthma

    Article • PLOS One, January 2017, PLOS

    Dr Robert J Freishtat, Professor Keith A Crandall

  187. Advancing genomics through the Global Invertebrate Genomics Alliance (GIGA)

    Article • Invertebrate Systematics, January 2017, CSIRO Publishing

    Professor Dr. Gert Wörheide, Professor Keith A Crandall

  188. Corrigendum to: Advancing genomics through the Global Invertebrate Genomics Alliance (GIGA)

    Article • Invertebrate Systematics, January 2017, CSIRO Publishing

    Professor Keith A Crandall

  189. Faculty of 1000 evaluation for GenVisR: Genomic Visualizations in R.

    Article • October 2016, Faculty of 1000, Ltd.

    Professor Keith A Crandall

  190. Collecting and processing freshwater crayfishes

    Article • Journal of Crustacean Biology, September 2016, Oxford University Press (OUP)

    Professor Keith A Crandall

  191. Two sampling methods yield distinct microbial signatures in the nasopharynges of asthmatic children

    Article • Microbiome, June 2016, Springer Science + Business Media

    Dr Robert J Freishtat, Professor Keith A Crandall

  192. Fish-T1K (Transcriptomes of 1,000 Fishes) Project: large-scale transcriptome data for fish evolution studies

    Article • GigaScience, May 2016, Oxford University Press (OUP)

    Professor Keith A Crandall

  193. Faculty of 1000 evaluation for Prediction of missing sequences and branch lengths in phylogenomic data.

    Article • April 2016, Faculty of 1000, Ltd.

    Professor Keith A Crandall

  194. Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical Pathology

    Article • Frontiers in Microbiology, April 2016, Frontiers

    Professor Keith A Crandall

  195. Nasopharynx Microbiome Composition Varies over Time in Pediatric Asthma

    Article • Journal of Investigative Medicine, February 2016, SAGE Publications

    Professor Keith A Crandall

  196. Comparison of two commercial DNA extraction kits for the analysis of nasopharyngeal bacterial communities

    Article • AIMS Microbiology, January 2016, American Institute of Mathematical Sciences (AIMS)

    Dr Robert J Freishtat, Professor Keith A Crandall

  197. Global Diversity and Conservation of Freshwater Crayfish (Crustacea: Decapoda: Astacoidea)

    Article • January 2016, Springer Science + Business Media

    Professor Keith A Crandall

  198. Climate oscillations, glacial refugia, and dispersal ability: factors influencing the genetic structure of the least salmonfly, Pteronarcella badia (Plecoptera), in Western North America

    Article • BMC Evolutionary Biology, December 2015, Springer Science + Business Media

    Professor Keith A Crandall

  199. Three new species of Aeglidae ( AeglaLeach, 1820) from Paraná State, Brazil

    Article • Journal of Crustacean Biology, November 2015, Oxford University Press (OUP)

    Professor Keith A Crandall

  200. Synthesis of phylogeny and taxonomy into a comprehensive tree of life

    Article • Proceedings of the National Academy of Sciences, September 2015, Proceedings of the National Academy of Sciences

    Professor Keith A Crandall

  201. Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls

    Article • PeerJ, August 2015, PeerJ

    Professor Keith A Crandall

  202. Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities

    Article • BMC Medical Genomics, August 2015, Springer Science + Business Media

    Dr Robert J Freishtat, Professor Keith A Crandall

  203. Phylogenetic Estimate of the Freshwater Crayfish (Decapoda: Astacidea) using Morphology and Molecules

    Article • July 2015, Taylor & Francis

    Professor Keith A Crandall

  204. Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma

    Article • PLOS One, June 2015, PLOS

    Dr Robert J Freishtat, Professor Keith A Crandall

  205. Concordance and discordance of sequence survey methods for molecular epidemiology

    Article • PeerJ, February 2015, PeerJ

    Professor Keith A Crandall

  206. Multiple drivers of decline in the global status of freshwater crayfish (Decapoda: Astacidea)

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, January 2015, Royal Society Publishing

    Dr Clive M Jones, Professor Keith A Crandall

  207. A synthetic phylogeny of freshwater crayfish: insights for conservation

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, January 2015, Royal Society Publishing

    Professor Keith A Crandall

  208. Phylogeny, extinction and conservation: embracing uncertainties in a time of urgency

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, January 2015, Royal Society Publishing

    Professor Keith A Crandall

  209. Molecular phylogeny, systematics and morphological evolution of the acorn barnacles (Thoracica: Sessilia: Balanomorpha)

    Article • Molecular Phylogenetics and Evolution, December 2014, Elsevier

    Professor Keith A Crandall

  210. Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

    Article • BMC Bioinformatics, November 2014, Springer Science + Business Media

    Professor Keith A Crandall

  211. Characteristics of equipartition for RNA structure

    Article • BMC Proceedings, October 2014, Springer Science + Business Media

    Professor Keith A Crandall

  212. Single-Molecule Long-Read 16S Sequencing To Characterize the Lung Microbiome from Mechanically Ventilated Patients with Suspected Pneumonia

    Article • Journal of Clinical Microbiology, August 2014, ASM Journals

    Dr Ian V Toma, Professor Keith A Crandall

  213. The native South American crayfishes (Crustacea, Parastacidae): state of knowledge and conservation status

    Article • Aquatic Conservation Marine and Freshwater Ecosystems, August 2014, Wiley

    Professor Keith A Crandall

  214. Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

    Article • BMC Bioinformatics, August 2014, Springer Science + Business Media

    Dr Ian V Toma, Professor Keith A Crandall

  215. Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes

    Article • Genomics, July 2014, Elsevier

    Professor Keith A Crandall

  216. Status, distribution, and genetics of Blair's fencing crayfish,Faxonella blairi(Decapoda: Cambaridae)

    Article • The Southwestern Naturalist, June 2014, Southwestern Association of Naturalists

    Professor Keith A Crandall

  217. Epidemiological and Evolutionary Dynamics of Pathogens

    Article • April 2014, ASM Journals

    Professor Keith A Crandall

  218. Biodiversity only makes sense in the light of evolution

    Article • Journal of Biosciences, April 2014, Springer Science + Business Media

    Professor Tetsukazu Yahara, Professor Keith A Crandall

  219. Life in extreme environments: microbial diversity in Great Salt Lake, Utah

    Article • World Journal of Surgery, March 2014, Springer Science + Business Media

    Professor Keith A Crandall

  220. The Emergence of Lobsters: Phylogenetic Relationships, Morphological Evolution and Divergence Time Comparisons of an Ancient Group (Decapoda: Achelata, Astacidea, Glypheidea, Polychelida)

    Article • Systematic Biology, February 2014, Oxford University Press (OUP)

    Professor Keith A Crandall

  221. Characteristics and Prediction of RNA Structure

    Article • BioMed Research International, January 2014, Hindawi Publishing Corporation

    Professor Keith A Crandall

  222. On stabilising the names of the infraorders of thalassinidean shrimps, Axiidea de Saint Laurent, 1979 and Gebiidea de Saint Laurent, 1979 (Decapoda)

    Article • Crustaceana, January 2014, Brill

    Professor Keith A Crandall

  223. PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

    Article • Microbiome, January 2014, Springer Science + Business Media

    Professor Keith A Crandall

  224. The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes

    Article • Journal of Heredity, December 2013, Oxford University Press (OUP)

    Professor Dr. Gert Wörheide, William Browne, Professor Keith A Crandall

  225. Lost Branches on the Tree of Life

    Article • PLoS Biology, September 2013, PLOS

    Professor Keith A Crandall

  226. Failed species, innominate forms, and the vain search for species limits: cryptic diversity in dusky salamanders (Desmognathus ) of eastern Tennessee

    Article • Ecology and Evolution, September 2013, Wiley

    Professor Keith A Crandall

  227. Pathoscope: Species identification and strain attribution with unassembled sequencing data

    Article • Genome Research, July 2013, Cold Spring Harbor Laboratory Press

    Professor Keith A Crandall

  228. Failed species, innominate forms, and the vain search for species limits: cryptic diversity in dusky salamanders (Desmognathus) of eastern Tennessee

    Article • Ecology and Evolution, June 2013, Wiley

    Professor Keith A Crandall

  229. Pathogen typing in the genomics era: MLST and the future of molecular epidemiology

    Article • Infection Genetics and Evolution, June 2013, Elsevier

    Professor Keith A Crandall

  230. Molecular phylogenetics of the burrowing crayfish genusFallicambarus(Decapoda: Cambaridae)

    Article • Zoologica Scripta, January 2013, Wiley

    Professor Keith A Crandall

  231. A comprehensive and integrative reconstruction of evolutionary history for Anomura (Crustacea: Decapoda)

    Article • BMC Evolutionary Biology, January 2013, Springer Science + Business Media

    Professor Keith A Crandall

  232. Insights into origins of Human T-cell Lymphotropic Virus Type 1 based on new strains from aboriginal people of Canada

    Article • Infection Genetics and Evolution, December 2012, Elsevier

    Professor Keith A Crandall

  233. Phylogeny and Evolutionary Patterns in the Dwarf Crayfish Subfamily (Decapoda: Cambarellinae)

    Article • PLOS One, November 2012, PLOS

    Professor Keith A Crandall, Ignacio Doadrio

  234. Molecular phylogeny and character evolution of the chthamaloid barnacles (Cirripedia: Thoracica)

    Article • Molecular Phylogenetics and Evolution, October 2012, Elsevier

    Professor Keith A Crandall

  235. A new species of burrowing crayfish,Virilastacus jarai(Crustacea, Decapoda, Parastacidae) from central-southern Chile

    Article • Proceedings of the Biological Society of Washington, October 2012, The Biological Society of Washington

    Professor Keith A Crandall

  236. Testing Phylogenetic Hypotheses of the Subgenera of the Freshwater Crayfish Genus Cambarus (Decapoda: Cambaridae)

    Article • PLOS One, September 2012, PLOS

    Professor Keith A Crandall

  237. Phylogenetics links monster larva to deep-sea shrimp

    Article • Ecology and Evolution, August 2012, Wiley

    Professor Keith A Crandall

  238. Phylogenetic search through partial tree mixing

    Article • BMC Bioinformatics, August 2012, Springer Science + Business Media

    Professor Keith A Crandall

  239. A Genomic Island in Salmonella enterica ssp. salamae Provides New Insights on the Genealogy of the Locus of Enterocyte Effacement

    Article • PLOS One, July 2012, PLOS

    Professor Keith A Crandall

  240. Acceleration tests of a 3GHz proton linear accelerator (LIBO) for hadrontherapy

    Article • Nuclear Instruments and Methods in Physics Research Section A Accelerators Spectrometers Detectors and Associated Equipment, July 2012, Elsevier

    Professor Keith A Crandall

  241. Conflicting Evolutionary Patterns Due to Mitochondrial Introgression and Multilocus Phylogeography of the Patagonian Freshwater Crab Aegla neuquensis

    Article • PLOS One, June 2012, PLOS

    Professor Keith A Crandall

  242. All the better to see you with: a review of odonate color vision with transcriptomic insight into the odonate eye

    Article • Organisms Diversity & Evolution, May 2012, Springer Science + Business Media

    Dr Eben J Gering, Professor Keith A Crandall

  243. Deep Phylogeny and Character Evolution in Thecostraca (Crustacea: Maxillopoda)

    Article • Integrative and Comparative Biology, April 2012, Oxford University Press (OUP)

    Professor Keith A Crandall

  244. Genetic diversity and molecular epidemiology of HIV transmission

    Article • Future Virology, March 2012, Future Medicine

    Professor Keith A Crandall

  245. Population Genomics and Phylogeography of an Australian Dairy Factory Derived Lytic Bacteriophage

    Article • Genome Biology and Evolution, February 2012, Oxford University Press (OUP)

    Professor Keith A Crandall

  246. The evolution of HIV: Inferences using phylogenetics

    Article • Molecular Phylogenetics and Evolution, February 2012, Elsevier

    Professor Keith A Crandall

  247. Waveform tomography imaging of a megasplay fault system in the seismogenic Nankai subduction zone

    Article • Earth and Planetary Science Letters, February 2012, Elsevier

    Takeshi Tsuji, Professor Keith A Crandall

  248. Three new species of Aegla (Anomura) freshwater crabs from the upper Uruguay River hydrographic basin in Brazil

    Article • Journal of Crustacean Biology, January 2012, Oxford University Press (OUP)

    Dr Sandro Santos, Professor Keith A Crandall

  249. Phylogenetic relationships, character evolution, and taxonomic implications within the slipper lobsters (Crustacea: Decapoda: Scyllaridae)

    Article • Molecular Phylogenetics and Evolution, January 2012, Elsevier

    Professor Keith A Crandall

  250. Population structure of two crayfish with diverse physiological requirements

    Article • December 2011, Taylor & Francis

    Professor Keith A Crandall

  251. Targeted Amplicon Sequencing (TAS): A Scalable Next-Gen Approach to Multilocus, Multitaxa Phylogenetics

    Article • Genome Biology and Evolution, October 2011, Oxford University Press (OUP)

    Professor Keith A Crandall

  252. Directed next generation sequencing for phylogenetics: An example using Decapoda (Crustacea)

    Article • Zoologischer Anzeiger, October 2011, Elsevier

    Professor Keith A Crandall

  253. Phylodynamics of HIV-1 from a Phase III AIDS Vaccine Trial in Bangkok, Thailand

    Article • PLOS One, March 2011, PLOS

    Professor Keith A Crandall

  254. HIV-1 infected monozygotic twins: a tale of two outcomes

    Article • BMC Evolutionary Biology, March 2011, Springer Science + Business Media

    Professor Keith A Crandall

  255. Multilocus Sequence Typing of Pathogens

    Article • January 2011, Elsevier

    Professor Keith A Crandall

  256. Different processes lead to similar patterns: a test of codivergence and the role of sea level and climate changes in shaping a southern temperate freshwater assemblage

    Article • BMC Evolutionary Biology, January 2011, Springer Science + Business Media

    Professor Keith A Crandall

  257. Molecular phylodynamics and protein modeling of infectious salmon anemia virus (ISAV)

    Article • BMC Evolutionary Biology, January 2011, Springer Science + Business Media

    Professor Keith A Crandall

  258. Gondwanan radiation of the Southern Hemisphere crayfishes (Decapoda: Parastacidae): evidence from fossils and molecules

    Article • Journal of Biogeography, November 2010, Wiley

    Professor Keith A Crandall

  259. Cryptic genetic divergence in the giant Tasmanian freshwater crayfish Astacopsis gouldi (Decapoda: Parastacidae): implications for conservation

    Article • Animal Conservation, October 2010, Wiley

    Professor Keith A Crandall

  260. Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda)

    Article • Zoologica Scripta, March 2010, Wiley

    Professor Keith A Crandall

  261. Evolution of Picornaviridae: An examination of phylogenetic relationships and cophylogeny

    Article • Molecular Phylogenetics and Evolution, March 2010, Elsevier

    Professor Keith A Crandall

  262. Phylogenetics Applied to Genotype/Phenotype Association and Selection Analyses with Sequence Data from Angptl4 in Humans

    Article • International Journal of Molecular Sciences, January 2010, MDPI AG

    Professor Keith A Crandall

  263. Description of a new species of Aeglidae, and new records of related species from river basins in Argentina (Crustacea, Anomura)

    Article • Zootaxa, January 2010, Magnolia Press

    Professor Keith A Crandall

  264. Population dynamics of Neisseria gonorrhoeae in Shanghai, China: a comparative study

    Article • BMC Infectious Diseases, January 2010, Springer Science + Business Media

    Professor Keith A Crandall

  265. EVOLUTIONARY BIOLOGY IN BIODIVERSITY SCIENCE, CONSERVATION, AND POLICY: A CALL TO ACTION

    Article • Evolution, January 2010, Oxford University Press (OUP)

    Professor Tetsukazu Yahara, Professor Keith A Crandall, Professor Carlos A. JOLY

  266. Ongoing Phenotypic and Genotypic Diversification in Adaptively Radiated Freshwater Crabs from Jamaica

    Article • January 2010, Springer Science + Business Media

    Professor Keith A Crandall

  267. New Species and New Records of Endemic Freshwater Crabs from the Atlantic Forest in Southern Brazil (Anomura: Aeglidae)

    Article • Journal of Crustacean Biology, January 2010, Oxford University Press (OUP)

    Dr Sandro Santos, Professor Keith A Crandall

  268. Phylogeography’s past, present, and future: 10 years after Avise, 2000

    Article • Molecular Phylogenetics and Evolution, January 2010, Elsevier

    Professor Keith A Crandall

  269. DNA EVIDENCE FOR NONHYBRID ORIGINS OF PARTHENOGENESIS IN NATURAL POPULATIONS OF VERTEBRATES

    Article • Evolution, December 2009, Wiley

    Professor Keith A Crandall

  270. Phylodynamics of HIV-1 from a Phase-III AIDS Vaccine Trial in North America

    Article • Molecular Biology and Evolution, October 2009, Oxford University Press (OUP)

    Professor Keith A Crandall

  271. Expanding the toolbox for phylogeographic analysis

    Article • Molecular Ecology, October 2009, Wiley

    Professor Keith A Crandall

  272. Decapod Crustacean Phylogenetics

    Article • June 2009

    Professor Keith A Crandall

  273. Decapod Phylogenetics and Molecular Evolution

    Article • June 2009, Taylor & Francis

    Professor Keith A Crandall

  274. Phylogenetic Inference Using Molecular Data

    Article • June 2009, Taylor & Francis

    Professor Keith A Crandall

  275. The Timing of the Diversification of the Freshwater Crayfishes

    Article • June 2009, Taylor & Francis

    Professor Keith A Crandall

  276. Conservation Assessment of Southern South American Freshwater Ecoregions on the Basis of the Distribution and Genetic Diversity of Crabs from the GenusAegla

    Article • Conservation Biology, June 2009, Wiley

    Professor Keith A Crandall

  277. Remarkable convergent evolution in specialized parasitic Thecostraca (Crustacea)

    Article • BMC Biology, April 2009, Springer Science + Business Media

    Professor Keith A Crandall

  278. A multifaceted approach to species conservation

    Article • Animal Conservation, April 2009, Wiley

    Professor Keith A Crandall

  279. Pleistocene glaciation leaves deep signature on the freshwater crabAegla alacalufiin Chilean Patagonia

    Article • Molecular Ecology, March 2009, Wiley

    Professor Keith A Crandall

  280. Evolution underground: A molecular phylogenetic investigation of Australian burrowing freshwater crayfish (Decapoda: Parastacidae) with particular focus on Engaeus Erichson

    Article • Molecular Phylogenetics and Evolution, March 2009, Elsevier

    Professor Keith A Crandall

  281. Phylogenetic Relationships and Molecular Adaptation Dynamics of Human Rhinoviruses

    Article • Molecular Biology and Evolution, January 2009, Oxford University Press (OUP)

    Professor Keith A Crandall

  282. Similarity Searching Using BLAST

    Article • January 2009, Springer Science + Business Media

    Professor Keith A Crandall

  283. Phylogenetic relationships between spiny, slipper and coral lobsters (Crustacea, Decapoda, Achelata)

    Article • Molecular Phylogenetics and Evolution, January 2009, Elsevier

    Professor Keith A Crandall

  284. Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial

    Article • Retrovirology, January 2009, Springer Science + Business Media

    Professor Keith A Crandall

  285. Taxonomic Revision of Cave Crayfish in the Genus Cambarus, Subgenus Aviticambarus (Decapoda: Cambaridae) with Descriptions of Two New Species, C. Speleocoopi and C. Laconensis, Endemic to Alabama, U.S.A.

    Article • Journal of Crustacean Biology, January 2009, Oxford University Press (OUP)

    Professor Keith A Crandall

  286. Divergence and diversification in North American Psoraleeae (Fabaceae) due to climate change

    Article • BMC Biology, December 2008, Springer Science + Business Media

    Professor Keith A Crandall

  287. The evolution of foot-and-mouth disease virus: Impacts of recombination and selection

    Article • Infection Genetics and Evolution, December 2008, Elsevier

    Professor Keith A Crandall

  288. Sea-level changes and palaeo-ranges: reconstruction of ancient shorelines and river drainages and the phylogeography of the Australian land crayfishEngaeus sericatusClark (Decapoda: Parastacidae)

    Article • Molecular Ecology, December 2008, Wiley

    Professor Keith A Crandall

  289. Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

    Article • Proceedings of the National Academy of Sciences, September 2008, Proceedings of the National Academy of Sciences

    Professor Keith A Crandall

  290. Publication in the Journal of Crustacean Biology

    Article • Journal of Crustacean Biology, May 2008, Crustacean Society

    Professor Keith A Crandall

  291. A Comparison of Phylogenetic Network Methods Using Computer Simulation

    Article • PLOS One, April 2008, PLOS

    Professor Keith A Crandall

  292. Characterization of the Follicular Dendritic Cell Reservoir of Human Immunodeficiency Virus Type 1

    Article • Journal of Virology, April 2008, ASM Journals

    Dr Tyler Thacker Thacker, Professor Keith A Crandall

  293. Avoidance of extinction through nonexistence: the use of museum specimens and molecular genetics to determine the taxonomic status of an endangered freshwater crayfish

    Article • Conservation Genetics, March 2008, Springer Science + Business Media

    Professor Keith A Crandall

  294. Disease progression and evolution of the HIV-1 env gene in 24 infected infants

    Article • Infection Genetics and Evolution, March 2008, Elsevier

    Professor Keith A Crandall

  295. Incorporating gaps as phylogenetic characters across eight DNA regions: Ramifications for North American Psoraleeae (Leguminosae)

    Article • Molecular Phylogenetics and Evolution, February 2008, Elsevier

    Professor Keith A Crandall

  296. Algorithms in Bioinformatics

    Article • January 2008

    Professor Keith A Crandall

  297. Methods for Analyzing Viral Evolution

    Article • January 2008, Springer Science + Business Media

    Professor Keith A Crandall

  298. The tempo and mode of barnacle evolution

    Article • Molecular Phylogenetics and Evolution, January 2008, Elsevier

    Professor Keith A Crandall

  299. Calculating expected DNA remnants from ancient founding events in human population genetics

    Article • BMC Genetics, January 2008, Springer Science + Business Media

    Professor Keith A Crandall

  300. Taxonomic Revision of Cave Crayfishes in the Genus Orconectes, Subgenus Orconectes (Decapoda: Cambaridae) along the Cumberland Plateau, Including a Description of a New Species, Orconectes Barri

    Article • Journal of Crustacean Biology, January 2008, Oxford University Press (OUP)

    Professor Keith A Crandall

  301. Interspecies physiological variation as a tool for cross-species assessments of global warming-induced endangerment: validation of an intrinsic determinant of macroecological and phylogeographic structure

    Article • Proceedings of the Royal Society B Biological Sciences, December 2007, Royal Society Publishing

    Professor Keith A Crandall

  302. Global diversity of crayfish (Astacidae, Cambaridae, and Parastacidae––Decapoda) in freshwater

    Article • Hydrobiologia, December 2007, Springer Science + Business Media

    Professor Keith A Crandall

  303. Global diversity of crabs (Aeglidae: Anomura: Decapoda) in freshwater

    Article • Hydrobiologia, December 2007, Springer Science + Business Media

    Professor Keith A Crandall

  304. Living with the genetic signature of Miocene induced change: Evidence from the phylogeographic structure of the endemic angulate tortoise Chersina angulata

    Article • Molecular Phylogenetics and Evolution, December 2007, Elsevier

    Professor Keith A Crandall

  305. Multi-locus DNA sequence data reveal a history of deep cryptic vicariance and habitat-driven convergence in the desert night lizardXantusia vigilisspecies complex (Squamata: Xantusiidae)

    Article • Molecular Ecology, September 2007, Wiley

    Professor Keith A Crandall

  306. Assessing the conservation status of the land snail Oreohelix peripherica wasatchensis (Family Oreohelicidae)

    Article • Conservation Genetics, September 2007, Springer Science + Business Media

    Professor Keith A Crandall

  307. The ecology and conservation status of Madagascar's endemic freshwater crayfish (Parastacidae; Astacoides)

    Article • Freshwater Biology, September 2007, Wiley

    Professor Keith A Crandall

  308. Human Immunodeficiency Viruses (HIV)

    Article • August 2007, Wiley

    Professor Keith A Crandall

  309. Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy

    Article • Infection Genetics and Evolution, July 2007, Elsevier

    Professor Keith A Crandall

  310. Testing hypotheses of population structuring in the Northeast Atlantic Ocean and Mediterranean Sea using the common cuttlefish Sepia officinalis

    Article • Molecular Ecology, July 2007, Wiley

    Professor Keith A Crandall

  311. Temporal trends in gonococcal population genetics in a high prevalence urban community

    Article • Infection Genetics and Evolution, March 2007, Elsevier

    Professor Keith A Crandall

  312. Molecular taxonomy in the dark: Evolutionary history, phylogeography, and diversity of cave crayfish in the subgenus Aviticambarus, genus Cambarus

    Article • Molecular Phylogenetics and Evolution, February 2007, Elsevier

    Professor Keith A Crandall

  313. A New Species of Burrowing Crayfish Virilastacus Retamali (Decapoda: Parastacidae) from the Southern Chile Peatland

    Article • Journal of Crustacean Biology, January 2007, Oxford University Press (OUP)

    Professor Keith A Crandall

  314. New methods for inferring population dynamics from microbial sequences

    Article • Infection Genetics and Evolution, January 2007, Elsevier

    Professor Keith A Crandall

  315. Cryptic diversity inEngaeusErichson,GeocharaxClark andGramastacusRiek (Decapoda : Parastacidae) revealed by mitochondrial 16S rDNA sequences

    Article • Invertebrate Systematics, January 2007, CSIRO Publishing

    Professor Keith A Crandall

  316. Distinguishing importation from diversification of quinolone-resistant Neisseria gonorrhoeae by molecular evolutionary analysis

    Article • BMC Evolutionary Biology, January 2007, Springer Science + Business Media

    Professor Keith A Crandall

  317. Surface to subsurface freshwater connections: phylogeographic and habitat analyses of Cambarus tenebrosus, a facultative cave-dwelling crayfish

    Article • Animal Conservation, November 2006, Wiley

    Professor Keith A Crandall

  318. Molecular Characterization of Crustacean Visual Pigments and the Evolution of Pancrustacean Opsins

    Article • Molecular Biology and Evolution, October 2006, Oxford University Press (OUP)

    Professor Keith A Crandall

  319. Longitudinal Population Analysis of Dual Infection with Recombination in Two Strains of HIV Type 1 Subtype B in an Individual from a Phase 3 HIV Vaccine Efficacy Trial

    Article • AIDS Research and Human Retroviruses, October 2006, Mary Ann Liebert Inc

    Professor Keith A Crandall

  320. Nested clade analysis statistics

    Article • Molecular Ecology Notes, September 2006, Wiley

    Professor Keith A Crandall

  321. Phylogeographic patterning in a freshwater crab species (Decapoda: Potamonautidae: Potamonautes) reveals the signature of historical climatic oscillations

    Article • Journal of Biogeography, September 2006, Wiley

    Professor Keith A Crandall

  322. Advocacy dressed up as scientific critique

    Article • Animal Conservation, August 2006, Wiley

    Professor Keith A Crandall

  323. Evolution of Afrotropical freshwater crab lineages obscured by morphological convergence

    Article • Molecular Phylogenetics and Evolution, July 2006, Elsevier

    Professor Keith A Crandall

  324. Somatic Mitochondrial DNA Mutations in Prostate Cancer and Normal Appearing Adjacent Glands in Comparison to Age-Matched Prostate Samples without Malignant Histology

    Article • Journal of Molecular Diagnostics, July 2006, Elsevier

    Professor Keith A Crandall

  325. Taxonomic subdivisions within the fossorial skink subfamily Acontinae (Squamata: Scincidae) reconsidered: a multilocus perspective

    Article • Zoologica Scripta, July 2006, Wiley

    Professor Keith A Crandall

  326. Comparing Phylogenetic Codivergence between Polyomaviruses and Their Hosts

    Article • Journal of Virology, June 2006, ASM Journals

    Professor Keith A Crandall

  327. Isolation and characterization of di- and tetranucleotide microsatellite loci in the yellow-spotted night lizard Lepidophyma flavimaculatum (Squamata: Xantusiidae)

    Article • Molecular Ecology Notes, March 2006, Wiley

    Professor Keith A Crandall

  328. On the phylogenetic placement of human T cell leukemia virus type 1 sequences associated with an Andean mummy

    Article • Infection Genetics and Evolution, March 2006, Elsevier

    Professor Keith A Crandall

  329. Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data

    Article • Infection Genetics and Evolution, March 2006, Elsevier

    Professor Keith A Crandall

  330. The Florida panther: an editorial perspective

    Article • Animal Conservation, February 2006, Wiley

    Professor Keith A Crandall

  331. Recombination Estimation Under Complex Evolutionary Models with the Coalescent Composite-Likelihood Method

    Article • Molecular Biology and Evolution, February 2006, Oxford University Press (OUP)

    Professor Keith A Crandall

  332. APPLICATIONS OF PHYLOGENETICS TO ISSUES IN FRESHWATER CRAYFISH BIOLOGY

    Article • Bulletin Français de Pisciculture, January 2006, EDP Sciences

    Professor Keith A Crandall

  333. Jumpstarting phylogenetic analysis

    Article • International Journal of Bioinformatics Research and Applications, January 2006, Inderscience Publishers

    Professor Keith A Crandall

  334. A new species of burrowing crayfish, Virilastacus rucapihuelensis (Crustacea: Decapoda: Parastacidae), from southern Chile

    Article • Proceedings of the Biological Society of Washington, December 2005, The Biological Society of Washington

    Professor Keith A Crandall

  335. Model-based multi-locus estimation of decapod phylogeny and divergence times

    Article • Molecular Phylogenetics and Evolution, November 2005, Elsevier

    Professor Keith A Crandall

  336. Subterranean phylogeography of freshwater crayfishes shows extensive gene flow and surprisingly large population sizes

    Article • Molecular Ecology, October 2005, Wiley

    Professor Keith A Crandall

  337. Phylogeny and biogeography of the freshwater crayfish Euastacus (Decapoda: Parastacidae) based on nuclear and mitochondrial DNA

    Article • Molecular Phylogenetics and Evolution, October 2005, Elsevier

    Professor Keith A Crandall

  338. Empirical tests for ecological exchangeability

    Article • Animal Conservation, August 2005, Wiley

    Professor Keith A Crandall

  339. Population Genetics of Neisseria gonorrhoeae in a High-Prevalence Community Using a Hypervariable Outer Membrane porB and 13 Slowly Evolving Housekeeping Genes

    Article • Molecular Biology and Evolution, June 2005, Oxford University Press (OUP)

    Professor Keith A Crandall

  340. Unraveling evolutionary lineages in the limbless fossorial skink genus Acontias (Sauria: Scincidae): are subspecies equivalent systematic units?

    Article • Molecular Phylogenetics and Evolution, March 2005, Elsevier

    Professor Keith A Crandall

  341. A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints

    Article • AIDS Research and Human Retroviruses, January 2005, Mary Ann Liebert Inc

    Professor Keith A Crandall

  342. EVOLUTION: Genomic Databases and the Tree of Life

    Article • Science, November 2004, American Association for the Advancement of Science

    Professor Keith A Crandall

  343. Phylogeography and speciation of colour morphs in the colonial ascidian Pseudodistoma crucigaster

    Article • Molecular Ecology, October 2004, Wiley

    Professor Keith A Crandall

  344. Molecular Systematics and Biogeography of the Southern South American Freshwater “Crabs” Aegla (Decapoda: Anomura: Aeglidae) Using Multiple Heuristic Tree Search Approaches

    Article • Systematic Biology, October 2004, Oxford University Press (OUP)

    Professor Keith A Crandall

  345. Testing Species Boundaries in an Ancient Species Complex with Deep Phylogeographic History: Genus Xantusia (Squamata: Xantusiidae)

    Article • The American Naturalist, September 2004, University of Chicago Press

    Professor Keith A Crandall

  346. The Impact of Species Concept on Biodiversity Studies

    Article • The Quarterly Review of Biology, June 2004, University of Chicago Press

    Professor Andy Purvis, Professor Keith A Crandall

  347. Evaluating the performance of likelihood methods for detecting population structure and migration

    Article • Molecular Ecology, April 2004, Wiley

    Professor Keith A Crandall

  348. Unraveling the Evolutionary Radiation of the Thoracican Barnacles Using Molecular and Morphological Evidence: A Comparison of Several Divergence Time Estimation Approaches

    Article • Systematic Biology, April 2004, Oxford University Press (OUP)

    Professor Keith A Crandall

  349. LIBO—a linac-booster for protontherapy: construction and tests of a prototype

    Article • Nuclear Instruments and Methods in Physics Research Section A Accelerators Spectrometers Detectors and Associated Equipment, April 2004, Elsevier

    Professor Keith A Crandall

  350. Beyond FST: Analysis of population genetic data for conservation

    Article • Conservation Genetics, January 2004, Springer Science + Business Media

    Professor Keith A Crandall

  351. The causes and consequences of HIV evolution

    Article • Nature Reviews Genetics, January 2004, Springer Science + Business Media

    Professor Keith A Crandall

  352. Lost along the way: the significance of evolution in reverse

    Article • Trends in Ecology & Evolution, October 2003, Elsevier

    Professor Keith A Crandall

  353. LINEAR HABITATS AND THE NESTED CLADE ANALYSIS: AN EMPIRICAL EVALUATION OF GEOGRAPHIC VERSUS RIVER DISTANCES USING AN OZARK CRAYFISH (DECAPODA: CAMBARIDAE)

    Article • Evolution, September 2003, Wiley

    Professor Keith A Crandall

  354. TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees

    Article • Bioinformatics, March 2003, Oxford University Press (OUP)

    Professor Keith A Crandall

  355. LINEAR HABITATS AND THE NESTED CLADE ANALYSIS: AN EMPIRICAL EVALUATION OF GEOGRAPHIC VERSUS RIVER DISTANCES USING AN OZARK CRAYFISH (DECAPODA: CAMBARIDAE)

    Article • Evolution, January 2003, The Society for the Study of Evolution

    Professor Keith A Crandall

  356. Recombination in Evolutionary Genomics

    Article • Annual Review of Genetics, December 2002, Annual Reviews

    Professor Keith A Crandall

  357. Synthesis and Pyroelectric Properties of Novel Ferroelectric Organosiloxane Liquid Crystalline Materials

    Article • Chemistry of Materials, November 2002, American Chemical Society (ACS)

    Professor Keith A Crandall

  358. Conservation phylogenetics of Chilean freshwater crabs Aegla (Anomura, Aeglidae): assigning priorities for aquatic habitat protection

    Article • Biological Conservation, June 2002, Elsevier

    Professor Keith A Crandall

  359. The Effect of Recombination on the Accuracy of Phylogeny Estimation

    Article • Journal of Molecular Evolution, March 2002, Springer Science + Business Media

    Professor Keith A Crandall

  360. A single base alteration in the CGG repeat region of FMR1: possible effects on gene expression and phenotype

    Article • Journal of Medical Genetics, March 2002, BMJ

    Professor Keith A Crandall

  361. Phylogenetic Approaches to Molecular Epidemiology

    Article • January 2002, Springer Science + Business Media

    Professor Keith A Crandall

  362. Phylogenetics of HIV

    Article • January 2002, Springer Science + Business Media

    Professor Keith A Crandall

  363. Phylogenetic Position of the Freshwater Anomuran Family Aeglidae

    Article • Journal of Crustacean Biology, January 2002, Oxford University Press (OUP)

    Professor Keith A Crandall

  364. Phylogenetic Relationships among the Species of Aegla (Anomura: Aeglidae) Freshwater Crabs from Chile

    Article • Journal of Crustacean Biology, January 2002, Oxford University Press (OUP)

    Professor Keith A Crandall

  365. Molecular Population Genetics: Coalescent Methods Based on Summary Statistics

    Article • January 2002, Springer Science + Business Media

    Professor Keith A Crandall

  366. Article • Conservation Genetics, January 2002, Springer Science + Business Media

    Professor Keith A Crandall

  367. TCS: estimating gene genealogies

    Article • January 2002, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Keith A Crandall

  368. Reanalysis of the Relationships among the Cirripedia and the Ascothoracida and the Phylogenetic Position of the Facetotecta (Maxillopoda: Thecostraca) Using 18S rDNA Sequences

    Article • Journal of Crustacean Biology, January 2002, Oxford University Press (OUP)

    Professor Keith A Crandall

  369. Human Immunodeficiency Viruses (HIV)

    Article • November 2001, Wiley

    Professor Keith A Crandall

  370. Evaluation of methods for detecting recombination from DNA sequences: Computer simulations

    Article • Proceedings of the National Academy of Sciences, November 2001, Proceedings of the National Academy of Sciences

    Professor Keith A Crandall

  371. Cryptic species of Clavelina (Ascidiacea) in two different habitats: harbours and rocky littoral zones in the northwestern Mediterranean

    Article • Marine Biology, September 2001, Springer Science + Business Media

    Professor Keith A Crandall

  372. Weight Gain in a Controlled Study of Risperidone in Children, Adolescents and Adults with Mental Retardation and Autism

    Article • Journal of Child and Adolescent Psychopharmacology, September 2001, Mary Ann Liebert Inc

    Professor Keith A Crandall

  373. Selecting the Best-Fit Model of Nucleotide Substitution

    Article • Systematic Biology, August 2001, Oxford University Press (OUP)

    Professor Keith A Crandall

  374. Selecting the Best-Fit Model of Nucleotide Substitution

    Article • Systematic Biology, August 2001, Oxford University Press (OUP)

    Professor Keith A Crandall

  375. Gene flow estimates in Utah's cougars imply management beyond Utah

    Article • Animal Conservation, August 2001, Wiley

    Professor Keith A Crandall

  376. Selecting Models of Nucleotide Substitution: An Application to Human Immunodeficiency Virus 1 (HIV-1)

    Article • Molecular Biology and Evolution, June 2001, Oxford University Press (OUP)

    Professor Keith A Crandall

  377. Simple (Wrong) Models for Complex Trees: A Case from Retroviridae

    Article • Molecular Biology and Evolution, February 2001, Oxford University Press (OUP)

    Professor Keith A Crandall

  378. Intraspecific gene genealogies: trees grafting into networks

    Article • Trends in Ecology & Evolution, January 2001, Elsevier

    Professor Keith A Crandall

  379. Human Immunodeficiency Virus Type 1 Quasi Species That Rebound after Discontinuation of Highly Active Antiretroviral Therapy Are Similar to the Viral Quasi Species Present before Initiation of Therapy

    Article • The Journal of Infectious Diseases, January 2001, Oxford University Press (OUP)

    Professor Keith A Crandall

  380. Squamate relationships based on C-mos nuclear DNA sequences: increased taxon sampling improves bootstrap support

    Article • Amphibia-Reptilia, January 2001, Brill

    Professor Keith A Crandall

  381. Limited Heterogeneity of HIV Type 1 in Infected Mothers Correlates with Lack of Vertical Transmission

    Article • AIDS Research and Human Retroviruses, October 2000, Mary Ann Liebert Inc

    Professor Keith A Crandall

  382. TCS: a computer program to estimate gene genealogies

    Article • Molecular Ecology, October 2000, Wiley

    Professor Keith A Crandall

  383. The monophyletic origin of freshwater crayfish estimated from nuclear and mitochondrial DNA sequences

    Article • Proceedings of the Royal Society B Biological Sciences, August 2000, Royal Society Publishing

    Professor Keith A Crandall

  384. Considering evolutionary processes in conservation biology

    Article • Trends in Ecology & Evolution, July 2000, Elsevier

    Professor Keith A Crandall

  385. Additional Copies of the Proteolipid Protein Gene Causing Pelizaeus-Merzbacher Disease Arise by Separate Integration into the X Chromosome

    Article • The American Journal of Human Genetics, July 2000, Elsevier

    Professor Keith A Crandall

  386. HTLV Type I/II in British Columbia Amerindians: A Seroprevalence Study and Sequence Characterization of an HTLV Type IIa Isolate

    Article • AIDS Research and Human Retroviruses, June 2000, Mary Ann Liebert Inc

    Professor Keith A Crandall

  387. Biogeographic regionalization of Australia: assigning conservation priorities based on endemic freshwater crayfish phylogenetics

    Article • Animal Conservation, May 2000, Wiley

    Professor Keith A Crandall

  388. Biogeographic regionalization of Australia: assigning conservation priorities based on endemic freshwater crayfish phylogenetics

    Article • Animal Conservation, May 2000, Wiley

    Professor Keith A Crandall

  389. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes

    Article • Molecular Ecology, April 2000, Wiley

    Professor Keith A Crandall

  390. Population Genetics of the porB Gene of Neisseria gonorrhoeae: Different Dynamics in Different Homology Groups

    Article • Molecular Biology and Evolution, March 2000, Oxford University Press (OUP)

    Professor Keith A Crandall

  391. Intragenomic Variation Within ITS1 and ITS2 of Freshwater Crayfishes (Decapoda: Cambaridae): Implications for Phylogenetic and Microsatellite Studies

    Article • Molecular Biology and Evolution, February 2000, Oxford University Press (OUP)

    Professor Keith A Crandall

  392. PCR Detection of Host and HIV-1 Sequences from Archival Brain Tissue

    Article • Journal of NeuroVirology, January 2000, Springer Science + Business Media

    Professor Keith A Crandall

  393. Phylogeny of the Thoracican Barnacles Based on 18S rDNA Sequences

    Article • Journal of Crustacean Biology, January 2000, Oxford University Press (OUP)

    Professor Keith A Crandall

  394. Systematics of the European Endangered Crayfish Species Austropotamobius Pallipes (Decapoda: Astacidae)

    Article • Journal of Crustacean Biology, January 2000, Oxford University Press (OUP)

    Professor Keith A Crandall

  395. On the Phylogenetic Positioning of the South American Freshwater Crayfish Genera (Decapoda: Parastacidae)

    Article • Journal of Crustacean Biology, January 2000, Oxford University Press (OUP)

    Professor Keith A Crandall

  396. Mitochondrial DNA phylogeography and population history of the grey wolf Canis lupus

    Article • Molecular Ecology, December 1999, Wiley

    Professor Keith A Crandall

  397. Effective population sizes: missing measures and missing concepts

    Article • Animal Conservation, November 1999, Wiley

    Professor Keith A Crandall

  398. Effective population sizes: missing measures and missing concepts

    Article • Animal Conservation, November 1999, Wiley

    Professor Keith A Crandall

  399. Different Models, Different Trees: The Geographic Origin of PTLV-I

    Article • Molecular Phylogenetics and Evolution, November 1999, Elsevier

    Professor Keith A Crandall

  400. Independent Evolution of HIV Type 1 in Different Brain Regions

    Article • AIDS Research and Human Retroviruses, June 1999, Mary Ann Liebert Inc

    Professor Keith A Crandall

  401. Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection

    Article • Molecular Biology and Evolution, March 1999, Oxford University Press (OUP)

    Professor Keith A Crandall

  402. The Zoogeography and Centers of Origin of the Crayfish Subgenus Procericambarus (Decapoda: Cambaridae)

    Article • Evolution, February 1999, JSTOR

    Professor Keith A Crandall

  403. Phylogenetic relationships among the Australian and New Zealand genera of freshwater crayfishes (Decapoda : Parastacidae)

    Article • Australian Journal of Zoology, January 1999, CSIRO Publishing

    Professor Keith A Crandall

  404. Highly anisotropic elasticity of a dendrimeric liquid crystal

    Article • Zeitschrift für Physik B Condensed Matter and Quanta, September 1998, Springer Science + Business Media

    Professor Keith A Crandall

  405. Conservation phylogenetics of Ozark crayfishes: Assigning priorities for aquatic habitat protection

    Article • Biological Conservation, May 1998, Elsevier

    Professor Keith A Crandall

  406. Cocaine abuse and HIV-1 infection: Epidemiology and neuropathogenesis

    Article • Journal of Neuroimmunology, March 1998, Elsevier

    Professor Keith A Crandall

  407. MODELTEST: testing the model of DNA substitution.

    Article • Bioinformatics, January 1998, Oxford University Press (OUP)

    Professor Keith A Crandall

  408. Viral and Host Determinants of Neurovirulence of HIV-1 Infection

    Article • January 1998, Springer Science + Business Media

    Professor Keith A Crandall

  409. Novel Tetrameric Tip Motifs (APGK and VPGK) in the V3 Loop of HIV Type 1 Envelope Sequences in Blood and Brain from Two Injection Drug Users in Miami, Florida

    Article • AIDS Research and Human Retroviruses, December 1997, Mary Ann Liebert Inc

    Professor Keith A Crandall

  410. Testing Species Boundaries in Biodiversity Studies

    Article • Conservation Biology, December 1997, Wiley

    Professor Keith A Crandall

  411. Preparing for EI Niño What Role for Forecasts?

    Article • Environment Science and Policy for Sustainable Development, December 1997, Taylor & Francis

    Professor Keith A Crandall

  412. The Molecular Evolution of Visual Pigments of Freshwater Crayfishes (Decapoda: Cambaridae)

    Article • Journal of Molecular Evolution, November 1997, Springer Science + Business Media

    Professor Keith A Crandall

  413. PHYLOGENY ESTIMATION AND HYPOTHESIS TESTING USING MAXIMUM LIKELIHOOD

    Article • Annual Review of Ecology and Systematics, November 1997, Annual Reviews

    Professor Keith A Crandall

  414. "Call of the wild"

    Article • Science, October 1997, American Association for the Advancement of Science

    Professor Keith A Crandall

  415. Multiple and Ancient Origins of the Domestic Dog

    Article • Science, June 1997, American Association for the Advancement of Science

    Professor Keith A Crandall

  416. Rhodopsin evolution in the dark

    Article • Nature, June 1997, Nature

    Professor Keith A Crandall

  417. <title>Development of liquid crystalline materials for IR sensing</title>

    Article • April 1997, SPIE

    Professor Keith A Crandall

  418. Sequence Note: HIV Type 1 Subtypes B and C from New Regions of India and Indian and Ethiopian Expatriates in Kuwait

    Article • AIDS Research and Human Retroviruses, May 1996, Mary Ann Liebert Inc

    Professor Keith A Crandall

  419. Crayfish Molecular Systematics: Using a Combination of Procedures to Estimate Phylogeny

    Article • Systematic Biology, March 1996, JSTOR

    Professor Keith A Crandall

  420. Identifying Links Between Genotype and Phenotype Using Marker Loci and Candidate Genes

    Article • January 1996, Springer Science + Business Media

    Professor Keith A Crandall

  421. Dendrimeric Liquid Crystals:  Isotropic−Nematic Pretransitional Behavior

    Article • Macromolecules, January 1996, American Chemical Society (ACS)

    Professor Keith A Crandall

  422. Ellipsometry at the nematic-isotropic phase transition in a confined geometry

    Article • Physical Review E, January 1996, American Physical Society (APS)

    Professor Keith A Crandall

  423. Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences

    Article • Molecular Biology and Evolution, January 1996, Oxford University Press (OUP)

    Professor Keith A Crandall

  424. Hiv-1 Neuropathogenesis and Abused Drugs

    Article • January 1996, Springer Science + Business Media

    Professor Keith A Crandall

  425. Dual infection with HIV-1 Thai subtype B and E

    Article • The Lancet, November 1995, Elsevier

    Professor Keith A Crandall

  426. Intraspecific phylogenetics: support for dental transmission of human immunodeficiency virus

    Article • Journal of Virology, April 1995, ASM Journals

    Professor Keith A Crandall

  427. Molecular Markers, Natural History and Evolution.

    Article • Systematic Biology, March 1995, JSTOR

    Professor Keith A Crandall

  428. Opsin Phylogeny and Evolution: A Model for Blue Shifts in Wavelength Regulation

    Article • Molecular Phylogenetics and Evolution, March 1995, Elsevier

    Professor Keith A Crandall

  429. J. Avise., Molecular Markers, Natural History and Evolution

    Article • Systematic Biology, March 1995, Oxford University Press (OUP)

    Professor Keith A Crandall

  430. Chirality, surface anchoring, and the cholesteric-smectic A phase transition

    Article • Liquid Crystals, February 1995, Taylor & Francis

    Professor Keith A Crandall

  431. HIV-1 Heterogeneity and Cytokines

    Article • January 1995, Springer Science + Business Media

    Professor Keith A Crandall

  432. Homeotropic, rub-free liquid-crystal light shutter

    Article • Applied Physics Letters, July 1994, American Institute of Physics

    Professor Keith A Crandall

  433. Intraspecific Cladogram Estimation: Accuracy at Higher Levels of Divergence

    Article • Systematic Biology, June 1994, JSTOR

    Professor Keith A Crandall

  434. Intraspecific Cladogram Estimation: Accuracy at Higher Levels of Divergence

    Article • Systematic Biology, June 1994, Oxford University Press (OUP)

    Professor Keith A Crandall

  435. Vanishing Freedericksz transition threshold voltage in a chiral nematic liquid crystal

    Article • Applied Physics Letters, March 1994, American Institute of Physics

    Professor Keith A Crandall

  436. Bend and splay elastic constants of diheptylazoxybenzene

    Article • Physical Review E, August 1993, American Physical Society (APS)

    Professor Keith A Crandall

  437. Water right transactions: Market values and price dispersion

    Article • Water Resources Research, June 1993, American Geophysical Union (AGU)

    Professor Keith A Crandall

  438. Book reviews

    Article • Bulletin of Mathematical Biology, May 1993, Springer Science + Business Media

    Professor Keith A Crandall

  439. Surface-mediated electroclinic effect in a chiral nematic liquid crystal

    Article • Physical Review A, July 1992, American Physical Society (APS)

    Professor Keith A Crandall

  440. Polarization-induced renormalization of theB1

    Article • Physical Review Letters, June 1992, American Physical Society (APS)

    Professor Keith A Crandall

  441. Molecular phylogenetics for conservation biology

    Article • Cambridge University Press

    Professor Keith A Crandall

  442. Global diversity of crayfish (Astacidae, Cambaridae, and Parastacidae—Decapoda) in freshwater

    Article • Springer Science + Business Media

    Professor Keith A Crandall

  443. Crayfish in the decapod lineage, their natural distribution and their threatened status

    Article • Cambridge University Press

    Professor Keith A Crandall

  444. Global diversity of crabs (Aeglidae: Anomura: Decapoda) in freshwater

    Article • Springer Science + Business Media

    Professor Keith A Crandall

  445. Infraorder Astacidea Latreille, 1802 p.p.: the freshwater crayfish

    Article • De Gruyter

    Professor Keith A Crandall

  446. Phylogenomics and Molecular Evolution of Polyomaviruses

    Article • Springer Science + Business Media

    Professor Keith A Crandall

  447. Nested clade phylogeographic analysis for conservation genetics

    Article • Cambridge University Press

    Professor Keith A Crandall

  448. Impact of cavity RF field phase and amplitude control uncertainties on the SNS Linac

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Professor Keith A Crandall

  449. Particle-beam behavior in the SNS Linac with simulated and reconstructed beams

    Article • Institute of Electrical & Electronics Engineers (IEEE)

    Professor Keith A Crandall