All Stories

  1. Coarse-Graining and Classifying Massive High-Throughput XFEL Datasets of Crystallization in Supercooled Water

    Article • Crystals, August 2025, MDPI AG

    Jayanath Koliyadu, Professor Henry N Chapman, Filipe RNC Maia

  2. SPRING, an effective and reliable framework for image reconstruction in single-particle Coherent Diffraction Imaging

    Article • npj Computational Materials, August 2025, Springer Science + Business Media

    Dr Kartik Ayyer, Filipe RNC Maia

  3. Impact of gas background on XFEL single-particle imaging

    Article • Scientific Reports, August 2025, Springer Science + Business Media

    Filipe RNC Maia

  4. Advancing time-resolved structural biology: latest strategies in cryo-EM and X-ray crystallography

    Article • Nature Chemical Biology, May 2025, Springer Science + Business Media

    Filipe RNC Maia, Professor Henry N Chapman

  5. Ptychographic reconstructions performed in real time and offline have equivalent quality

    Article • Scientific Reports, April 2025, Springer Science + Business Media

    Filipe RNC Maia

  6. Aerosol size determination via light scattering of viruses and protein complexes

    Article • Communications Physics, April 2025, Springer Science + Business Media

    Filipe RNC Maia

  7. Microsecond time-resolved X-ray scattering by utilizing MHz repetition rate at second-generation XFELs

    Article • Nature Chemical Biology, July 2024, Springer Science + Business Media

    Filipe RNC Maia

  8. Controlling Drug Partitioning in Individual Protein Condensates through Laser-Induced Microscale Phase Transitions

    Article • Journal of the American Chemical Society, July 2024, American Chemical Society (ACS)

    Filipe RNC Maia

  9. Resolving Nonequilibrium Shape Variations among Millions of Gold Nanoparticles

    Article • ACS Nano, May 2024, American Chemical Society (ACS)

    Dr Benedikt J Daurer, Dr Kartik Ayyer, Filipe RNC Maia

  10. Controlling Drug Partitioning in Individual Protein Condensates through Laser-Induced Microscale Phase Transitions

    Article • March 2024, Cold Spring Harbor Laboratory Press

    Filipe RNC Maia

  11. Helium-electrospray improves sample delivery in X-ray single-particle imaging experiments

    Article • Scientific Reports, February 2024, Springer Science + Business Media

    Safi Rafie-Zinedine, Filipe RNC Maia

  12. Enhancing electrospray ionization efficiency for particle transmission through an aerodynamic lens stack

    Article • Journal of Synchrotron Radiation, February 2024, International Union of Crystallography

    Safi Rafie-Zinedine, Filipe RNC Maia

  13. Observation of a single protein by ultrafast X-ray diffraction

    Article • Light Science & Applications, January 2024, Springer Science + Business Media

    Dr Kartik Ayyer, Dr Benedikt J Daurer, Filipe RNC Maia

  14. 3D-printed sheet jet for stable megahertz liquid sample delivery at X-ray free-electron lasers

    Article • IUCrJ, September 2023, International Union of Crystallography

    Jayanath Koliyadu, Filipe RNC Maia

  15. Ptychographic wavefront characterization for single-particle imaging at x-ray lasers

    Article • Optica, April 2021, Optical Society of America (OSA)

    Dr Benedikt J Daurer, Filipe RNC Maia

  16. Introduction to the special issue on Ptychography: software and technical developments

    Article • Journal of Applied Crystallography, March 2021, International Union of Crystallography

    Filipe RNC Maia

  17. 3D diffractive imaging of nanoparticle ensembles using an x-ray laser

    Article • Optica, December 2020, Optical Society of America (OSA)

    Jayanath Koliyadu, Professor Henry N Chapman, Dr Kartik Ayyer, Dr Benedikt J Daurer, Filipe RNC Maia

  18. Three-Dimensional Coherent Bragg Imaging of Rotating Nanoparticles

    Article • Physical Review Letters, December 2020, American Physical Society (APS)

    Filipe RNC Maia

  19. Diffraction data from aerosolized Coliphage PR772 virus particles imaged with the Linac Coherent Light Source

    Article • Scientific Data, November 2020, Springer Science + Business Media

    Dr Kartik Ayyer, Filipe RNC Maia

  20. Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus

    Article • Structure, August 2020, Elsevier

    Filipe RNC Maia

  21. Pulse-to-pulse wavefront sensing at free-electron lasers using ptychography

    Article • Journal of Applied Crystallography, July 2020, International Union of Crystallography

    Dr Benedikt J Daurer, Filipe RNC Maia

  22. Perspectives on single particle imaging with x rays at the advent of high repetition rate x-ray free electron laser sources

    Article • Structural Dynamics, July 2020, American Institute of Physics

    Filipe RNC Maia

  23. Megahertz single-particle imaging at the European XFEL

    Article • Communications Physics, May 2020, Springer Science + Business Media

    Prof. Dr. Martin Trebbin, Professor Henry N Chapman, Dr Benedikt J Daurer, Filipe RNC Maia, Dr Kartik Ayyer

  24. The role of transient resonances for ultra-fast imaging of single sucrose nanoclusters

    Article • Nature Communications, January 2020, Springer Science + Business Media

    Dr Benedikt J Daurer, Filipe RNC Maia

  25. Evaluation of serial crystallographic structure determination within megahertz pulse trains

    Article • Structural Dynamics, November 2019, American Institute of Physics

    Prof. Dr. Martin Trebbin, Filipe RNC Maia

  26. Electrospray sample injection for single-particle imaging with x-ray lasers

    Article • Science Advances, May 2019, American Association for the Advancement of Science

    Dr Benedikt J Daurer, Filipe RNC Maia

  27. Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses. Corrigendum

    Article • IUCrJ, April 2019, International Union of Crystallography

    Dr Benedikt J Daurer, Filipe RNC Maia

  28. A statistical approach to detect protein complexes at X-ray free electron laser facilities

    Article • Communications Physics, December 2018, Springer Science + Business Media

    Filipe RNC Maia

  29. Electrospray sample injection for single-particle imaging with X-ray lasers

    Article • October 2018, Cold Spring Harbor Laboratory Press

    Filipe RNC Maia

  30. Megahertz serial crystallography

    Article • Nature Communications, October 2018, Springer Science + Business Media

    Dr Kartik Ayyer, Professor Bostjan Kobe, Prof. Dr. Martin Trebbin, Filipe RNC Maia

  31. Single-particle imaging without symmetry constraints at an X-ray free-electron laser

    Article • IUCrJ, September 2018, International Union of Crystallography

    Filipe RNC Maia, Dr Kartik Ayyer

  32. Rayleigh-scattering microscopy for tracking and sizing nanoparticles in focused aerosol beams

    Article • IUCrJ, September 2018, International Union of Crystallography

    Filipe RNC Maia

  33. Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging

    Article • IUCrJ, September 2018, International Union of Crystallography

    Filipe RNC Maia

  34. Three-dimensional localization of nanoscale battery reactions using soft X-ray tomography

    Article • Nature Communications, March 2018, Springer Science + Business Media

    Filipe RNC Maia

  35. Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly

    Article • Virology, March 2018, Elsevier

    Filipe RNC Maia

  36. Femtosecond X-ray Fourier holography imaging of free-flying nanoparticles

    Article • Nature Precedings, February 2018, Springer Science + Business Media

    Dr Benedikt J Daurer, Professor Henry N Chapman, Filipe RNC Maia

  37. Structural variability and complexity of the giant Pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy

    Article • Scientific Reports, October 2017, Springer Science + Business Media

    Filipe RNC Maia

  38. Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses

    Article • Physical Review Letters, October 2017, American Physical Society (APS)

    Dr Benedikt J Daurer, Filipe RNC Maia

  39. Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source

    Article • Scientific Data, June 2017, Springer Science + Business Media

    Dr Benedikt J Daurer, Dr Kartik Ayyer, Filipe RNC Maia

  40. Ptychographic imaging for the characterization of X-ray free-electron laser beams

    Article • Journal of Physics Conference Series, June 2017, Institute of Physics Publishing

    Dr Benedikt J Daurer, Filipe RNC Maia

  41. Cryo-EM of aMarseilleviridaevirus particle reveals a large internal microassembly

    Article • May 2017, Cold Spring Harbor Laboratory Press

    Filipe RNC Maia

  42. Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses

    Article • IUCrJ, April 2017, International Union of Crystallography

    Dr Benedikt J Daurer, Filipe RNC Maia

  43. Near-edge X-ray refraction fine structure microscopy

    Article • Applied Physics Letters, February 2017, American Institute of Physics

    Filipe RNC Maia

  44. Nanosurveyor: a framework for real-time data processing

    Article • Advanced Structural and Chemical Imaging, January 2017, Springer Science + Business Media

    Dr Benedikt J Daurer, Filipe RNC Maia

  45. The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes

    Article • Scientific Reports, September 2016, Springer Science + Business Media

    Filipe RNC Maia

  46. CCP-FEL: a collection of computer programs for free-electron laser research

    Article • Journal of Applied Crystallography, August 2016, International Union of Crystallography

    Filipe RNC Maia

  47. The trickle before the torrent—diffraction data from X-ray lasers

    Article • Scientific Data, August 2016, Nature

    Filipe RNC Maia

  48. A data set from flash X-ray imaging of carboxysomes

    Article • Scientific Data, August 2016, Nature

    Filipe RNC Maia

  49. Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser

    Article • Scientific Data, August 2016, Nature

    Filipe RNC Maia

  50. Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source

    Article • Scientific Data, August 2016, Nature

    Filipe RNC Maia, Dr Benedikt J Daurer, Dr Kartik Ayyer

  51. Open data set of live cyanobacterial cells imaged using an X-ray laser

    Article • Scientific Data, August 2016, Nature

    Filipe RNC Maia

  52. SHARP: a distributed GPU-based ptychographic solver

    Article • Journal of Applied Crystallography, July 2016, International Union of Crystallography

    Dr Benedikt J Daurer, Filipe RNC Maia

  53. Condor: a simulation tool for flash X-ray imaging

    Article • Journal of Applied Crystallography, July 2016, International Union of Crystallography

    Filipe RNC Maia

  54. Real-time analysis for X-ray diffraction

    Article • Journal of Applied Crystallography, April 2016, International Union of Crystallography

    Dr Benedikt J Daurer, Filipe RNC Maia

  55. Data publication with the structural biology data grid supports live analysis

    Article • Nature Communications, March 2016, Nature

    Rachelle Gaudet, Dr. Alexandre M.J.J. Bonvin, Filipe RNC Maia

  56. Real-time data-intensive computing

    Article • January 2016, American Institute of Physics

    Filipe RNC Maia, Dr Benedikt J Daurer

  57. The linac coherent light source single particle imaging road map

    Article • Structural Dynamics, April 2015, American Institute of Physics

    Filipe RNC Maia

  58. CAMERA: The Center for Advanced Mathematics for Energy Research Applications

    Article • Synchrotron Radiation News, March 2015, Taylor & Francis

    Filipe RNC Maia

  59. Three-Dimensional Reconstruction of the Giant Mimivirus Particle with an X-Ray Free-Electron Laser

    Article • Physical Review Letters, March 2015, American Physical Society (APS)

    Filipe RNC Maia

  60. Imaging single cells in a beam of live cyanobacteria with an X-ray laser

    Article • Nature Communications, February 2015, Nature

    Filipe RNC Maia, Professor Henry N Chapman

  61. High-throughput imaging of heterogeneous cell organelles with an X-ray laser

    Article • Nature Reports Climate Change, November 2014, Nature

    Filipe RNC Maia, Professor Henry N Chapman

  62. Explosion dynamics of sucrose nanospheres monitored by time of flight spectrometry and coherent diffractive imaging at the split-and-delay beam line of the FLASH soft X-ray laser

    Article • Optics Express, November 2014, Optical Society of America (OSA)

    Filipe RNC Maia, Professor Henry N Chapman

  63. Chemical composition mapping with nanometre resolution by soft X-ray microscopy

    Article • Nature Reports Climate Change, September 2014, Nature

    Filipe RNC Maia

  64. Shapes and vorticities of superfluid helium nanodroplets

    Article • Science, August 2014, American Association for the Advancement of Science

    Filipe RNC Maia

  65. Cheetah: software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data

    Article • Journal of Applied Crystallography, May 2014, International Union of Crystallography

    Filipe RNC Maia, Professor Henry N Chapman

  66. Toward unsupervised single-shot diffractive imaging of heterogeneous particles using X-ray free-electron lasers

    Article • Optics Express, November 2013, Optical Society of America (OSA)

    Filipe RNC Maia, Professor Henry N Chapman

  67. Augmented projections for ptychographic imaging

    Article • Inverse Problems, October 2013, Institute of Physics Publishing

    Filipe RNC Maia

  68. Mesoscale morphology of airborne core–shell nanoparticle clusters: x-ray laser coherent diffraction imaging

    Article • Journal of Physics B Atomic Molecular and Optical Physics, August 2013, Institute of Physics Publishing

    Filipe RNC Maia, Professor Henry N Chapman

  69. The extraction of single-particle diffraction patterns from a multiple-particle diffraction pattern

    Article • Optics Express, June 2013, Optical Society of America (OSA)

    Filipe RNC Maia, Professor Henry N Chapman

  70. Sensing the wavefront of x-ray free-electron lasers using aerosol spheres

    Article • Optics Express, May 2013, Optical Society of America (OSA)

    Filipe RNC Maia, Professor Henry N Chapman

  71. Impact of wave front and coherence optimization in coherent diffractive imaging

    Article • Optics Express, May 2013, Optical Society of America (OSA)

    Filipe RNC Maia

  72. Profiling structured beams using injected aerosols

    Article • October 2012, SPIE

    Filipe RNC Maia

  73. The Coherent X-ray Imaging Data Bank

    Article • Nature Chemical Biology, August 2012, Nature

    Filipe RNC Maia

  74. Erratum: Fractal morphology, imaging and mass spectrometry of single aerosol particles in flight

    Article • Nature, August 2012, Nature

    Filipe RNC Maia, Professor Henry N Chapman

  75. Noise-robust coherent diffractive imaging with a single diffraction pattern

    Article • Optics Express, July 2012, Optical Society of America (OSA)

    Filipe RNC Maia

  76. Fractal morphology, imaging and mass spectrometry of single aerosol particles in flight

    Article • Nature, June 2012, Nature

    Filipe RNC Maia, Professor Henry N Chapman

  77. Femtosecond free-electron laser x-ray diffraction data sets for algorithm development

    Article • Optics Express, February 2012, Optical Society of America (OSA)

    Dr Max J Cryle, Filipe RNC Maia

  78. Lipidic phase membrane protein serial femtosecond crystallography

    Article • Nature Chemical Biology, January 2012, Nature

    Filipe RNC Maia, Professor Gergely Katona, Professor Henry N Chapman

  79. In vivo protein crystallization opens new routes in structural biology

    Article • Nature Chemical Biology, January 2012, Nature

    Filipe RNC Maia, Professor Henry N Chapman

  80. Time-resolved protein nanocrystallography using an X-ray free-electron laser

    Article • Optics Express, January 2012, Optical Society of America (OSA)

    Filipe RNC Maia

  81. Radiation damage in protein serial femtosecond crystallography using an x-ray free-electron laser

    Article • Physical Review B, December 2011, American Physical Society (APS)

    Filipe RNC Maia, Professor Henry N Chapman

  82. Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements

    Article • Nature Reports Climate Change, December 2011, Nature

    Filipe RNC Maia, Professor Henry N Chapman

  83. Iterative Krylov solution methods for geophysical electromagnetic simulations on throughput-oriented processing units

    Article • The International Journal of High Performance Computing Applications, November 2011, SAGE Publications

    Filipe RNC Maia

  84. Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering

    Article • Optics Express, August 2011, Optical Society of America (OSA)

    Filipe RNC Maia

  85. Compressive auto-indexing in femtosecond nanocrystallography

    Article • Ultramicroscopy, June 2011, Elsevier

    Filipe RNC Maia

  86. Iterative Krylov Solution Methods for Geophysical Electromagnetic Simulations on Throughput-oriented Graphical Processing Units

    Article • May 2011, EAGE Publications

    Filipe RNC Maia

  87. Single particle imaging with soft x-rays at the Linac Coherent Light Source

    Article • May 2011, SPIE

    Filipe RNC Maia

  88. Structure-factor analysis of femtosecond microdiffraction patterns from protein nanocrystals

    Article • Acta Crystallographica Section A Foundations of Crystallography, February 2011, International Union of Crystallography

    Filipe RNC Maia, Professor Henry N Chapman

  89. Single mimivirus particles intercepted and imaged with an X-ray laser

    Article • Nature, February 2011, Springer Science + Business Media

    Professor Jean-Michel Claverie, Filipe RNC Maia, Professor Henry N Chapman

  90. Femtosecond X-ray protein nanocrystallography

    Article • Nature, February 2011, Springer Science + Business Media

    Filipe RNC Maia, Professor Henry N Chapman

  91. On the Feasibility of Nanocrystal Imaging Using Intense and Ultrashort X-ray Pulses

    Article • ACS Nano, January 2011, American Chemical Society (ACS)

    Filipe RNC Maia, Professor Henry N Chapman

  92. Hawk: the image reconstruction package for coherent X-ray diffractive imaging

    Article • Journal of Applied Crystallography, October 2010, International Union of Crystallography

    Filipe RNC Maia

  93. Femtosecond diffractive imaging of biological cells

    Article • Journal of Physics B Atomic Molecular and Optical Physics, September 2010, Institute of Physics Publishing

    Filipe RNC Maia, Professor Henry N Chapman

  94. Compressive phase contrast tomography

    Article • August 2010, SPIE

    Filipe RNC Maia

  95. Publisher’s Note: Cryptotomography: Reconstructing 3D Fourier Intensities from Randomly Oriented Single-Shot Diffraction Patterns [Phys. Rev. Lett. 104 , 225501 (2010)]

    Article • Physical Review Letters, June 2010, American Physical Society (APS)

    Filipe RNC Maia, Professor Henry N Chapman

  96. Cryptotomography: Reconstructing 3D Fourier Intensities from Randomly Oriented Single-Shot Diffraction Patterns

    Article • Physical Review Letters, June 2010, American Physical Society (APS)

    Filipe RNC Maia, Professor Henry N Chapman

  97. Structural variability and the incoherent addition of scattered intensities in single-particle diffraction

    Article • Physical Review E, September 2009, American Physical Society (APS)

    Filipe RNC Maia

  98. Single-Shot Diffractive Imaging with a Table-Top Femtosecond Soft X-Ray Laser-Harmonics Source

    Article • Physical Review Letters, July 2009, American Physical Society (APS)

    Filipe RNC Maia

  99. Femtosecond Dynamic Diffraction Imaging with Free Electron Lasers: X-Ray Snapshots of Ultra-Fast Nanoscale Phenomena

    Article • January 2009, Optical Society of America (OSA)

    Filipe RNC Maia

  100. Feasibility of imaging living cells at subnanometer resolutions by ultrafast X-ray diffraction

    Article • Quarterly Reviews of Biophysics, November 2008, Cambridge University Press

    Filipe RNC Maia

  101. X-Ray optics: Clarity through a keyhole

    Article • Nature Nanotechnology, May 2008, Nature

    Filipe RNC Maia

  102. Structural studies of melting on the picosecond time scale

    Article • Physical Chemistry Chemical Physics, January 2008, Royal Society of Chemistry

    Filipe RNC Maia

  103. Single Particle X-ray Diffractive Imaging

    Article • Nano Letters, January 2008, American Chemical Society (ACS)

    Filipe RNC Maia, Professor Henry N Chapman

  104. Femtosecond diffractive imaging with a soft-X-ray free-electron laser

    Article • Nature Nanotechnology, November 2006, Nature

    Filipe RNC Maia, Professor Henry N Chapman

  105. The binding of xanthone derivatives to transthyretin

    Article • Biochemical Pharmacology, December 2005, Elsevier

    Dr Luis Gales, Filipe RNC Maia

  106. Interactive visualization of electron density slices

    Article • Journal of Applied Crystallography, May 2005, International Union of Crystallography

    Filipe RNC Maia

  107. New designs for inhibitors of the NF-κB: DNA binding

    Article • Theoretical Chemistry Accounts, March 2005, Springer Science + Business Media

    Dr Tiago Barros, Filipe RNC Maia

  108. Design of 2-cyclopentenone derivatives with enhanced NF-κB: DNA binding inhibitory properties

    Article • Journal of Molecular Structure THEOCHEM, October 2004, Elsevier

    Dr Tiago Barros, Filipe RNC Maia