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  1. Author Correction: The landscape of viral associations in human cancers

    Article • Nature Genetics, March 2023, Springer Science + Business Media

    Professor Daniel S. Brewer, Taobo Hu, Dr Elizabeth L Christie

  2. Whole exome sequencing study identifies candidate loss of function variants and locus heterogeneity in familial cholesteatoma

    Article • PLOS One, March 2023, PLOS

    Professor Daniel S. Brewer, Professor Carl Philpott

  3. Gene-Transcript Expression in Urine Supernatant and Urine Cell-Sediment Are Different but Equally Useful for Detecting Prostate Cancer

    Article • Cancers, January 2023, MDPI AG

    Professor Daniel S. Brewer

  4. Caution Regarding the Specificities of Pan-Cancer Microbial Structure

    Article • January 2023, Cold Spring Harbor Laboratory Press

    Professor Daniel S. Brewer

  5. Combining Molecular Subtypes with Multivariable Clinical Models Has the Potential to Improve Prediction of Treatment Outcomes in Prostate Cancer at Diagnosis

    Article • December 2022, MDPI AG

    Professor Daniel S. Brewer

  6. Insight into the role of ‘normal’ prostate cells in prostate cancer development

    Article • Molecular Cancer, September 2022, Springer Science + Business Media

    Professor Daniel S. Brewer

  7. Whole exome sequencing study identifies candidate loss of function variants and locus heterogeneity in familial cholesteatoma

    Article • July 2022, Cold Spring Harbor Laboratory Press

    Professor Daniel S. Brewer, Professor Carl Philpott

  8. APOBEC3 mutational signatures are associated with extensive and diverse genomic instability across multiple tumour types

    Article • BMC Biology, May 2022, Springer Science + Business Media

    Professor Daniel S. Brewer

  9. A prostate cancer patient's genetic code may be able to predict the correct treatment

    Article • European Urology, May 2022, Elsevier

    Professor Daniel S. Brewer

  10. A potenital new test from urine for prostate cancer

    Article • Cancers, April 2022, MDPI AG

    Professor Daniel S. Brewer

  11. Microbiomes of Urine and the Prostate Are Linked to Human Prostate Cancer Risk Groups

    Article • European Urology Oncology, April 2022, Elsevier

    Professor Daniel S. Brewer

  12. Urine risk score PUR can distinguish the aggressiveness of disease in fine detail.

    Article • Life, November 2021, MDPI AG

    Professor Daniel S. Brewer

  13. A new urine test for aggressive prostate cancer combining two different approaches

    Article • Cancers, April 2021, MDPI AG

    Professor Daniel S. Brewer

  14. Prostate cancer evolution from multilineage primary to single lineage metastases with implications for liquid biopsy

    Article • Nature Communications, October 2020, Springer Science + Business Media

    Professor Daniel S. Brewer

  15. Overlap of biological markers of prostate cancer reveals information about how progression occurs.

    Article • Genes, July 2020, MDPI AG

    Professor Daniel S. Brewer

  16. New types of prostate cancer have been discovered and linked with how patient progress

    Article • British Journal of Cancer, March 2020, Springer Science + Business Media

    Professor Daniel S. Brewer

  17. Development of a multivariable risk model integrating urinary cell DNA methylation and cell‐free RNA data for the detection of significant prostate cancer

    Article • The Prostate, March 2020, Wiley

    Professor Daniel S. Brewer

  18. Detecting viruses in tumour tissue to discover links between cancer and infection

    Article • Nature Genetics, February 2020, Springer Science + Business Media

    Professor Daniel S. Brewer, Taobo Hu

  19. Pan-cancer analysis of whole genomes

    Article • Nature, February 2020, Springer Science + Business Media

    Taobo Hu, Anna Ehinger, Professor Daniel S. Brewer, Dr Elizabeth L Christie

  20. Testing computational tools to detect bacteria and viruses in human samples of DNA

    Article • October 2019, Springer Science + Business Media

    Professor Daniel S. Brewer, Abraham Gihawi

  21. Potential for diagnosis of infectious disease from the 100,000 Genomes Project Metagenomic Dataset: Recommendations for reporting results

    Article • Wellcome Open Research, October 2019, Faculty of 1000, Ltd.

    Professor Daniel S. Brewer

  22. New prostate cancer urine test shows who needs treatment and when

    Article • BJU International, June 2019, Wiley

    Professor Daniel S. Brewer, Shea P Connell

  23. Transcriptome-Wide Effects of Sphingosine Kinases Knockdown in Metastatic Prostate and Breast Cancer Cells: Implications for Therapeutic Targeting

    Article • Frontiers in Pharmacology, March 2019, Frontiers

    Professor Daniel S. Brewer

  24. epiCaPture: A Urine DNA Methylation Test for Early Detection of Aggressive Prostate Cancer

    Article • JCO Precision Oncology, January 2019, American Society of Clinical Oncology (ASCO)

    Professor Daniel S. Brewer

  25. A urine-based DNA methylation assay, ProCUrE, to identify clinically significant prostate cancer

    Article • Clinical Epigenetics, November 2018, Springer Science + Business Media

    Professor Daniel S. Brewer

  26. The landscape of viral associations in human cancers

    Article • November 2018, Cold Spring Harbor Laboratory Press

    Professor Daniel S. Brewer

  27. Detecting new potential lines of attack against prostate cancer based on genetic information

    Article • Nature Genetics, April 2018, Springer Science + Business Media

    Professor Daniel S. Brewer

  28. Study of mechanisms to "knock out" genes in prostate cancer

    Article • PLoS Genetics, September 2017, PLOS

    Professor Daniel S. Brewer

  29. DESNT: A Poor Prognosis Category of Human Prostate Cancer

    Article • European Urology Focus, March 2017, Elsevier

    Professor Daniel S. Brewer

  30. Mutational signatures of ionizing radiation in second malignancies

    Article • Nature Communications, September 2016, Nature

    Professor Daniel S. Brewer

  31. Prostate Single Nucleotide Polymorphism Provides a Crucial Clue to Cancer Aggression in Active Surveillance Patients

    Article • European Urology, February 2016, Elsevier

    Professor Daniel S. Brewer

  32. Integration of copy number and transcriptomics provides risk stratification in prostate cancer: A discovery and validation cohort study

    Article • EBioMedicine, September 2015, Elsevier

    Professor Daniel S. Brewer

  33. Erratum: Corrigendum: Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

    Article • Nature Genetics, May 2015, Springer Science + Business Media

    Professor Daniel S. Brewer

  34. The evolutionary history of lethal metastatic prostate cancer

    Article • Nature, April 2015, Nature

    Professor Daniel S. Brewer

  35. Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue

    Article • Nature Genetics, March 2015, Springer Science + Business Media

    Professor Daniel S. Brewer

  36. Mutation detection in formalin-fixed prostate cancer biopsies taken at the time of diagnosis using next-generation DNA sequencing

    Article • Journal of Clinical Pathology, January 2015, BMJ

    Professor Daniel S. Brewer

  37. HES5 silencing is an early and recurrent change in prostate tumourigenesis

    Article • January 2015, Bioscientifica

    Professor Daniel S. Brewer

  38. Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer

    Article • eLife, October 2014, eLife

    Professor Ming-Qing Du, Anna Ehinger, adrienne Flanagan, Professor Daniel S. Brewer

  39. A gene expression based predictor for high risk myeloma treated with intensive therapy and autologous stem cell rescue

    Article • Leukemia & Lymphoma, August 2014, Taylor & Francis

    Dr Brian A Walker, Professor Daniel S. Brewer

  40. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes

    Article • Science, July 2014, American Association for the Advancement of Science

    Anna Ehinger, Professor Daniel S. Brewer

  41. Focal amplification of the androgen receptor gene in hormone-naive human prostate cancer

    Article • British Journal of Cancer, January 2014, Nature

    Professor Daniel S. Brewer

  42. Benzo pyrene-induced DNA adducts and gene expression profiles in target and non-target organs for carcinogenesis in mice

    Article • BMC Genomics, January 2014, Springer Science + Business Media

    Professor Daniel S. Brewer

  43. Improved risk stratification in myeloma using a microRNA‐based classifier

    Article • British Journal of Haematology, May 2013, Wiley

    Dr Brian A Walker, Professor Daniel S. Brewer

  44. Prognostic value of PTEN loss in men with conservatively managed localised prostate cancer

    Article • British Journal of Cancer, May 2013, Nature

    Professor Daniel S. Brewer

  45. Prognostic value of blood mRNA expression signatures in castration-resistant prostate cancer: a prospective, two-stage study

    Article • The Lancet Oncology, November 2012, Elsevier

    Professor Daniel S. Brewer

  46. Novel, gross chromosomal alterations involving PTEN cooperate with allelic loss in prostate cancer

    Article • Modern Pathology, August 2012, Nature

    Professor Daniel S. Brewer

  47. Novel, gross chromosomal alterations involving PTEN cooperate with allelic loss in prostate cancer

    Article • Modern Pathology, March 2012, Nature

    Professor Daniel S. Brewer

  48. Modelling Transcription Factor Activity

    Article • September 2011, Wiley

    Professor Daniel S. Brewer

  49. A Gene Expression-Based Predictor for Myeloma Patients at High Risk of Developing Bone Disease on Bisphosphonate Treatment

    Article • Clinical Cancer Research, August 2011, American Association for Cancer Research (AACR)

    Dr Brian A Walker, Professor Daniel S. Brewer

  50. siRNA Knockdown of Ribosomal Protein Gene RPL19 Abrogates the Aggressive Phenotype of Human Prostate Cancer

    Article • PLOS One, July 2011, PLOS

    Professor Daniel S. Brewer

  51. A HIF-Regulated VHL-PTP1B-Src Signaling Axis Identifies a Therapeutic Target in Renal Cell Carcinoma

    Article • Science Translational Medicine, June 2011, American Association for the Advancement of Science

    Professor Daniel S. Brewer

  52. PRKC-  Expression Promotes the Aggressive Phenotype of Human Prostate Cancer Cells and Is a Novel Target for Therapeutic Intervention

    Article • Genes & Cancer, May 2010, SAGE Publications

    Professor Daniel S. Brewer

  53. Molecular characterisation of ERG, ETV1 and PTEN gene loci identifies patients at low and high risk of death from prostate cancer

    Article • British Journal of Cancer, January 2010, Nature

    Professor Daniel S. Brewer

  54. A census of amplified and overexpressed human cancer genes

    Article • Nature Reviews Drug Discovery, January 2010, Nature

    Professor Daniel S. Brewer

  55. Dissection of a complex transcriptional response using genome-wide transcriptional modelling

    Article • Molecular Systems Biology, November 2009, EMBO

    Professor Daniel S. Brewer

  56. Integration ofERGgene mapping and gene-expression profiling identifies distinct categories of human prostate cancer

    Article • BJU International, May 2009, Wiley

    Professor Daniel S. Brewer

  57. Interlaboratory and Interplatform Comparison of Microarray Gene Expression Analysis of HepG2 Cells Exposed to Benzo(a)pyrene

    Article • OMICS A Journal of Integrative Biology, April 2009, Mary Ann Liebert Inc

    Professor Daniel S. Brewer

  58. rHVDM: an R package to predict the activity and targets of a transcription factor

    Article • Bioinformatics, December 2008, Oxford University Press (OUP)

    Professor Daniel S. Brewer

  59. TEAD1 and c-Cbl are novel prostate basal cell markers that correlate with poor clinical outcome in prostate cancer

    Article • British Journal of Cancer, November 2008, Nature

    Professor Daniel S. Brewer

  60. Biopsy tissue microarray study of Ki-67 expression in untreated, localized prostate cancer managed by active surveillance

    Article • Prostate Cancer and Prostatic Diseases, September 2008, Nature

    Professor Daniel S. Brewer

  61. Expression profiling of CD133+and CD133-epithelial cells from human prostate

    Article • The Prostate, June 2008, Wiley

    Professor Daniel S. Brewer

  62. Fitting ordinary differential equations to short time course data

    Article • Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences, February 2008, Royal Society Publishing

    Professor Daniel S. Brewer

  63. Detection of TMPRSS2-ERG Translocations in Human Prostate Cancer by Expression Profiling Using GeneChip Human Exon 1.0 ST Arrays

    Article • Journal of Molecular Diagnostics, January 2008, Elsevier

    Professor Daniel S. Brewer

  64. AHR- and DNA-Damage-Mediated Gene Expression Responses Induced by Benzo(a)pyrene in Human Cell Lines

    Article • Chemical Research in Toxicology, December 2007, American Chemical Society (ACS)

    Professor Daniel S. Brewer

  65. Article • BMC Bioinformatics, January 2006, Springer Science + Business Media

    Professor Daniel S. Brewer

  66. Article • Genome Biology, January 2006, Springer Science + Business Media

    Professor Daniel S. Brewer

  67. Article • BMC Genomics, January 2006, Springer Science + Business Media

    Professor Daniel S. Brewer

  68. Reconstructing gene networks: what are the limits?

    Article • Biochemical Society Transactions, December 2003, Portland Press Ltd.

    Professor Daniel S. Brewer