All Stories

  1. Network analyses identify liver‐specific targets for treating liver diseases

    Article • Molecular Systems Biology, August 2017, EMBO

    Professor Adil Mardinoglu, Sunjae Lee, Tim Kuijpers, Joshua K. Park, Dr Resat Cinar, Professor Morten Grötli

  2. AUP1 (Ancient Ubiquitous Protein 1)

    Article • Arteriosclerosis Thrombosis and Vascular Biology, March 2017, Wolters Kluwer Health

    Professor Adil Mardinoglu

  3. Personal model‐assisted identification of NAD + and glutathione metabolism as intervention target in NAFLD

    Article • Molecular Systems Biology, February 2017, EMBO

    Professor Adil Mardinoglu

  4. Predicting growth of the healthy infant using a genome scale metabolic model

    Article • npj Systems Biology and Applications, January 2017, Nature

    Professor Adil Mardinoglu

  5. Editorial: The Impact of Systems Medicine on Human Health and Disease

    Article • Frontiers in Physiology, November 2016, Frontiers

    Professor Adil Mardinoglu

  6. Adaptive Evolution of Phosphorus Metabolism in Prochlorococcus

    Article • mSystems, November 2016, ASM Journals

    John R Casey, Professor Adil Mardinoglu

  7. Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance

    Article • Cell Metabolism, July 2016, Elsevier

    Professor Adil Mardinoglu, Sunjae Lee

  8. Liver: Phenotypic and genetic variance: a systems approach to the liver

    Article • Nature Reviews Gastroenterology & Hepatology, June 2016, Nature

    Professor Adil Mardinoglu

  9. Dysregulated signaling hubs of liver lipid metabolism reveal hepatocellular carcinoma pathogenesis

    Article • Nucleic Acids Research, May 2016, Oxford University Press (OUP)

    Professor Adil Mardinoglu, Sunjae Lee

  10. Investigating the Combinatory Effects of Biological Networks on Gene Co-expression

    Article • Frontiers in Physiology, May 2016, Frontiers

    Professor Adil Mardinoglu, Sunjae Lee

  11. Proteome- and Transcriptome-Driven Reconstruction of the Human Myocyte Metabolic Network and Its Use for Identification of Markers for Diabetes

    Article • Cell Reports, February 2016, Elsevier

    Professor Adil Mardinoglu

  12. Personalized Cardiovascular Disease Prediction and Treatment—A Review of Existing Strategies and Novel Systems Medicine Tools

    Article • Frontiers in Physiology, January 2016, Frontiers

    Professor Adil Mardinoglu

  13. Confounding Effects of Metformin on the Human Gut Microbiome in Type 2 Diabetes

    Article • Cell Metabolism, January 2016, Elsevier

    Professor Adil Mardinoglu

  14. Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism

    Article • Molecular BioSystems, January 2016, Royal Society of Chemistry

    Professor Adil Mardinoglu

  15. Cancer Metabolism: A Modeling Perspective

    Article • Frontiers in Physiology, December 2015, Frontiers

    Professor Adil Mardinoglu

  16. Stratification of Hepatocellular Carcinoma Patients Based on Acetate Utilization

    Article • Cell Reports, December 2015, Elsevier

    Professor Adil Mardinoglu, Dr Resat Cinar

  17. Kinetic Studies to Elucidate Impaired Metabolism of Triglyceride-rich Lipoproteins in Humans

    Article • Frontiers in Physiology, November 2015, Frontiers

    Professor Adil Mardinoglu

  18. The gut microbiota modulates host amino acid and glutathione metabolism in mice

    Article • Molecular Systems Biology, October 2015, EMBO

    Professor Adil Mardinoglu

  19. Extensive weight loss reveals distinct gene expression changes in human subcutaneous and visceral adipose tissue

    Article • Scientific Reports, October 2015, Nature

    Professor Adil Mardinoglu

  20. New paradigms for metabolic modeling of human cells

    Article • Current Opinion in Biotechnology, August 2015, Elsevier

    Professor Adil Mardinoglu

  21. The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

    Article • BMC Genomics, June 2015, Springer Science + Business Media

    Professor Adil Mardinoglu

  22. Logical transformation of genome-scale metabolic models for gene level applications and analysis

    Article • Bioinformatics, March 2015, Oxford University Press (OUP)

    Professor Adil Mardinoglu

  23. Identifying anti-growth factors for human cancer cell lines through genome-scale metabolic modeling

    Article • Scientific Reports, February 2015, Nature

    Professor Adil Mardinoglu

  24. Modelling the Effect of SPION Size in a Stent Assisted Magnetic Drug Targeting System with Interparticle Interactions

    Article • The Scientific World JOURNAL, January 2015, Hindawi Publishing Corporation

    Professor Adil Mardinoglu

  25. Defining the Human Adipose Tissue Proteome To Reveal Metabolic Alterations in Obesity

    Article • Journal of Proteome Research, November 2014, American Chemical Society (ACS)

    Professor Adil Mardinoglu

  26. Defining the human gallbladder proteome by transcriptomics and affinity proteomics

    Article • PROTEOMICS, October 2014, Wiley

    Professor Adil Mardinoglu

  27. The use of Genome-scale metabolic models for drug target and biomarker identification

    Article • New Biotechnology, July 2014, Elsevier

    Professor Adil Mardinoglu

  28. Genome-scale metabolic modelling of hepatocytes reveals serine deficiency in patients with non-alcoholic fatty liver disease

    Article • Nature Communications, January 2014, Nature

    Professor Adil Mardinoglu

  29. Understanding the interactions between bacteria in the human gut through metabolic modeling

    Article • Scientific Reports, August 2013, Nature

    Professor Adil Mardinoglu

  30. Genome-scale modeling of human metabolism - a systems biology approach

    Article • Biotechnology Journal, April 2013, Wiley

    Professor Adil Mardinoglu

  31. Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT

    Article • PLoS Computational Biology, May 2012, PLOS

    Professor Adil Mardinoglu

  32. Systems medicine and metabolic modelling

    Article • Journal of Internal Medicine, January 2012, Wiley

    Professor Adil Mardinoglu

  33. Inclusion of interactions in mathematical modelling of implant assisted magnetic drug targeting

    Article • Applied Mathematical Modelling, January 2012, Elsevier

    Professor Adil Mardinoglu

  34. Development of artificial neuronal networks for molecular communication

    Article • Nano Communication Networks, June 2011, Elsevier

    Professor Adil Mardinoglu

  35. Artificial backbone neuronal network for nano scale sensors

    Article • April 2011, Institute of Electrical & Electronics Engineers (IEEE)

    Professor Adil Mardinoglu

  36. Theoretical modelling of physiologically stretched vessel in magnetisable stent assisted magnetic drug targetingapplication

    Article • Journal of Magnetism and Magnetic Materials, February 2011, Elsevier

    Professor Adil Mardinoglu

  37. Many particle magnetic dipole–dipole and hydrodynamic interactions in magnetizable stent assisted magnetic drug targeting

    Article • Journal of Magnetism and Magnetic Materials, August 2010, Elsevier

    Professor Adil Mardinoglu

  38. Inclusion of magnetic dipole–dipole and hydrodynamic interactions in implant-assisted magnetic drug targeting

    Article • Journal of Magnetism and Magnetic Materials, December 2009, Elsevier

    Professor Adil Mardinoglu

  39. Calculation of nanoparticle capture efficiency in magnetic drug targeting

    Article • Journal of Magnetism and Magnetic Materials, December 2008, Elsevier

    Professor Adil Mardinoglu