All Stories

  1. Boolean modeling of mechanosensitive Epithelial to Mesenchymal Transition and its reversal

    Article • September 2022, Cold Spring Harbor Laboratory Press

    Withmore Williams Associate Professor Erzsébet Regan

  2. Active Perception during Angiogenesis: Filopodia speed up Notch selection of tip cells in silico and in vivo

    Article • August 2020, Cold Spring Harbor Laboratory Press

    Withmore Williams Associate Professor Erzsébet Regan

  3. Boolean model of anchorage dependence and contact inhibition points to coordinated inhibition but semi-independent induction of proliferation and migration

    Article • Computational and Structural Biotechnology Journal, January 2020, Elsevier

    Withmore Williams Associate Professor Erzsébet Regan

  4. Stochastic phenotypic switching in endothelial cell heterogeneity

    Article • January 2020, Elsevier

    Withmore Williams Associate Professor Erzsébet Regan

  5. A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint

    Article • Scientific Reports, November 2019, Springer Science + Business Media

    Dr. David Deritei, Withmore Williams Associate Professor Erzsébet Regan

  6. Boolean model of growth signaling, cell cycle and apoptosis predicts the molecular mechanism of aberrant cell cycle progression driven by hyperactive PI3K

    Article • PLoS Computational Biology, March 2019, PLOS

    Dr. David Deritei, Withmore Williams Associate Professor Erzsébet Regan

  7. Combined Toxicity of Insecticides and Fungicides Applied to California Almond Orchards to Honey Bee Larvae and Adults

    Article • Insects, January 2019, MDPI AG

    Withmore Williams Associate Professor Erzsébet Regan

  8. Time to Decide? Dynamical Analysis Predicts Partial Tip/Stalk Patterning States Arise during Angiogenesis

    Article • PLoS ONE, November 2016, PLOS

    Withmore Williams Associate Professor Erzsébet Regan

  9. Intracellular RIG-I Signaling Regulates TLR4-Independent Endothelial Inflammatory Responses to Endotoxin

    Article • The Journal of Immunology, June 2016, The American Association of Immunologists

    Withmore Williams Associate Professor Erzsébet Regan

  10. Principles of dynamical modularity in biological regulatory networks

    Article • Scientific Reports, March 2016, Springer Science + Business Media

    Dr. David Deritei, Withmore Williams Associate Professor Erzsébet Regan

  11. A role of stochastic phenotype switching in generating mosaic endothelial cell heterogeneity

    Article • Nature Communications, January 2016, Springer Science + Business Media

    Withmore Williams Associate Professor Erzsébet Regan

  12. Expression of the Robo4 receptor in endothelial cells is regulated by two AP-1 protein complexes

    Article • Biochemical and Biophysical Research Communications, November 2015, Elsevier

    Withmore Williams Associate Professor Erzsébet Regan

  13. AKT1 and MYC Induce Distinctive Metabolic Fingerprints in Human Prostate Cancer

    Article • Cancer Research, December 2014, American Association for Cancer Research (AACR)

    Withmore Williams Associate Professor Erzsébet Regan

  14. Can Active Perception Generate Bistability? Heterogeneous Collective Dynamics and Vascular Patterning

    Article • July 2014, The MIT Press

    Withmore Williams Associate Professor Erzsébet Regan

  15. FOXO1-Mediated Activation of Akt Plays a Critical Role in Vascular Homeostasis

    Article • Circulation Research, July 2014, Wolters Kluwer Health

    Withmore Williams Associate Professor Erzsébet Regan

  16. Community detection by graph Voronoi diagrams

    Article • New Journal of Physics, June 2014, Institute of Physics Publishing

    Dr. David Deritei, Withmore Williams Associate Professor Erzsébet Regan

  17. Do Endothelial Cells Dream of Eclectic Shape?

    Article • Developmental Cell, April 2014, Elsevier

    Withmore Williams Associate Professor Erzsébet Regan

  18. The flow dependency of Tie2 expression in endotoxemia

    Article • Intensive Care Medicine, April 2013, Springer Science + Business Media

    Withmore Williams Associate Professor Erzsébet Regan

  19. Dynamical Systems Approach to Endothelial Heterogeneity

    Article • Circulation Research, June 2012, Wolters Kluwer Health

    Withmore Williams Associate Professor Erzsébet Regan

  20. Vascular bed–specific regulation of the von Willebrand factor promoter in the heart and skeletal muscle

    Article • Blood, January 2011, American Society of Hematology

    Withmore Williams Associate Professor Erzsébet Regan

  21. Differential roles for ETS, CREB, and EGR binding sites in mediating VEGF receptor 1 expression in vivo

    Article • Blood, December 2009, American Society of Hematology

    Withmore Williams Associate Professor Erzsébet Regan

  22. Detecting Hierarchical Modularity in Biological Networks

    Article • January 2009, Springer Science + Business Media

    Withmore Williams Associate Professor Erzsébet Regan

  23. Networks: Structure and Dynamics

    Article • January 2009, Springer Science + Business Media

    Withmore Williams Associate Professor Erzsébet Regan

  24. Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655

    Article • Journal of Bacteriology, October 2003, ASM Journals

    Dr Nikos C Kyrpides, Withmore Williams Associate Professor Erzsébet Regan, Gabor Balazsi

  25. Hierarchical organization in complex networks

    Article • February 2003, American Physical Society (APS)

    Withmore Williams Associate Professor Erzsébet Regan

  26. Hierarchical Organization of Modularity in Complex Networks

    Article • January 2003, Springer Science + Business Media

    Withmore Williams Associate Professor Erzsébet Regan

  27. Scale-Free and Hierarchical Structures in Complex Networks

    Article • January 2003, American Institute of Physics

    Withmore Williams Associate Professor Erzsébet Regan

  28. Networks in life: scaling properties and eigenvalue spectra

    Article • Physica A Statistical Mechanics and its Applications, November 2002, Elsevier

    Withmore Williams Associate Professor Erzsébet Regan

  29. Hierarchical Organization of Modularity in Metabolic Networks

    Article • Science, August 2002, American Association for the Advancement of Science

    Withmore Williams Associate Professor Erzsébet Regan

  30. Evolution of the social network of scientific collaborations

    Article • Physica A Statistical Mechanics and its Applications, August 2002, Elsevier

    Withmore Williams Associate Professor Erzsébet Regan

  31. Deterministic scale-free networks

    Article • Physica A Statistical Mechanics and its Applications, October 2001, Elsevier

    Withmore Williams Associate Professor Erzsébet Regan

  32. Physics of the rhythmic applause

    Article • June 2000, American Physical Society (APS)

    Withmore Williams Associate Professor Erzsébet Regan

  33. The sound of many hands clapping

    Article • Nature, February 2000, Springer Science + Business Media

    Withmore Williams Associate Professor Erzsébet Regan

  34. Spatial stochastic resonance in one-dimensional Ising systems

    Article • October 1999, American Physical Society (APS)

    Withmore Williams Associate Professor Erzsébet Regan

  35. Hierarchical modularity in biological networks: the case of metabolic networks

    Article • Cambridge University Press

    Withmore Williams Associate Professor Erzsébet Regan

  36. The Architecture of Biological Networks

    Article • Springer Science + Business Media

    Withmore Williams Associate Professor Erzsébet Regan