What is it about?

The brain is composed of hundreds of cell types. To understand what these different cell types do requires selectively monitoring and perturbing their activity. This is best accomplished using genetic methods that allow each cell type to be targeted based on the genes it expresses. Such targeting methods, however, frequently disrupt the function of the genes used to perform the targeting. We introduce a method for targeting specific cell types that limits disruption of the genes used to gain genetic access to them. In addition, we show how the method can be used it to selectively target brain cells that express different Hox transcription factor genes. These developmentally important genes are expressed in cell types located in anatomically distinct regions along the anterior-posterior axis of the fly nervous system. Our method thus can be used to target specific regions of the nervous system, as well as specific cell types within them, using combinatorial methods.

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Why is it important?

We introduce a unique method for capturing the regulatory information needed to express a particular gene without perturbing the expression of the gene and its protein product. Our method uses what are called split inteins, which can join two protein fragments to make a whole protein. Split inteins have typically been used to join two halves of a particular split protein of interest, but the split inteins introduced in our method act generally and can join many different split proteins.

Perspectives

A personally satisfying aspect of the this paper is that it improves upon a widely used method that we previously introduced under the name of Trojan exons." Trojan exons are synthetic exons that can be inserted into the intron of a gene to allow the co-expression of a molecule of interest that can then be used to manipulate cellular function. Our original Trojan exon technology did not work well for some genes, particularly for developmentally essential transcription factors. The new method, using split inteins, supplies a needed work-around that is effective for such previously problematic genes. Our proof-of-concept of the method using the developmentally important class of Hox transcription factor genes also fills a gap in that we provide for the first time a comprehensive toolkit for genetically targeting cells that express these regionally-specific master regulator genes,

Benjamin White
National Institute of Mental Health

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This page is a summary of: Hox gene–specific cellular targeting using split intein Trojan exons, Proceedings of the National Academy of Sciences, April 2024, Proceedings of the National Academy of Sciences,
DOI: 10.1073/pnas.2317083121.
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