All Stories

  1. Editorial
  2. Approximate reciprocal relationship between two cause-specific hazard ratios in COVID-19 data with mutually exclusive events
  3. Blood-Type-A is a COVID-19 infection and hospitalization risk in a Turkish cohort
  4. Enhance explainability of manifold learning
  5. Impact of the Types and Relative Quantities of IGHV Gene Mutations in Predicting Prognosis of Patients With Chronic Lymphocytic Leukemia
  6. Noether’s Theorem as a Metaphor for Chargaff’s 2nd Parity Rule in Genomics
  7. Psychotropic Medication Use Is Associated With Greater 1-Year Incidence of Dementia After COVID-19 Hospitalization
  8. Revisiting the neutral dynamics derived limiting guanine-cytosine content using human de novo point mutation data
  9. Investigations into SCAMP5, a candidate lupus risk gene expressed in plasmacytoid dendritic cells
  10. Mortality in association with antipsychotic medication use and clinical outcomes among geriatric psychiatry outpatients with COVID-19
  11. Alpha variant (B.1.1.7) of SARS-CoV-2 increases fatality-rate for patients under age of 70 years and hospitalization risk overall
  12. Beyond standard pipeline and p < 0.05 in pathway enrichment analyses
  13. COVID-19 Tanısı ile Hastanede Yatan Hastalarda Hastanede Kalış Süresini Etkileyen Faktörler Üzerine Bir Araştırma
  14. COVID-19 outpatients and surviving inpatients exhibit comparable blood test results that are distinct from non-surviving inpatients
  15. Survival Analyses of COVID-19 Patients in a Turkish Cohort: Comparison between Using Time to Death and Time to Release
  16. On Fair Performance Comparison between Random Survival Forest and Cox Regression: An Example of Colorectal Cancer Study
  17. Arg206Cys substitution in DNASE1L3 causes a defect in DNASE1L3 protein secretion that confers risk of systemic lupus erythematosus
  18. Potential Predictive Factors for Breast Cancer Subtypes from a North Cyprus Cohort Analysis
  19. Editorial
  20. Beta rank function: A smooth double-Pareto-like distribution
  21. Empirical design of a variant quality control pipeline for whole genome sequencing data using replicate discordance
  22. Influence of genetic copy number variants of the human GLUT3 glucose transporter gene SLC2A3 on protein expression, glycolysis and rheumatoid arthritis risk: A genetic replication study
  23. Mechanism for IL-15–Driven B Cell Chronic Lymphocytic Leukemia Cycling: Roles for AKT and STAT5 in Modulating Cyclin D2 and DNA Damage Response Proteins
  24. Alignment-free approaches for predicting novel Nuclear Mitochondrial Segments (NUMTs) in the human genome
  25. Quantifying local randomness in human DNA and RNA sequences using Erdös motifs
  26. The Role of Genetics in Advancing Precision Medicine for Alzheimer’s Disease—A Narrative Review
  27. Entropic fluctuations in DNA sequences
  28. Nonlocal Cellular Automata
  29. Glomerulocapillary miRNA response to HLA-class I antibody in vitro and in vivo
  30. Application of t-SNE to human genetic data
  31. Population patterns in World’s administrative units
  32. Beyond Zipf’s Law: The Lavalette Rank Function and Its Properties
  33. human gene-set sizes
  34. Differential burden of rare protein truncating variants in Alzheimer’s disease patients compared to centenarians
  35. Distinctions among Circulating Antibody-Secreting Cell Populations, Including B-1 Cells, in Human Adult Peripheral Blood
  36. Predicting functional regulatory SNPs in the human antimicrobial peptide genes DEFB1 and CAMP in tuberculosis and HIV/AIDS
  37. Principles for the organization of gene-sets
  38. A survey of disease connections for CD4+ T cell master genes and their directly linked genes
  39. Autoimmune Disease–Associated Haplotypes of BLK Exhibit Lowered Thresholds for B Cell Activation and Expansion of Ig Class‐Switched B Cells
  40. A seven-gene expression panel distinguishing clonal expansions of pre-leukemic and chronic lymphocytic leukemia B cells from normal B lymphocytes
  41. The osteopontin transgenic mouse is a new model for Sjögren's syndrome
  42. Enrichment of Genetic Variants for Rheumatoid Arthritis within T-Cell and NK-Cell Enhancer Regions
  43. Characterizing regions in the human genome unmappable by next-generation-sequencing at the read length of 1000 bases
  44. Bacterial genomes lacking long-range correlations may not be modeled by low-order Markov chains: The role of mixing statistics and frame shift of neighboring genes
  45. Editorial: Complexity in genomes
  46. Mappability and read length
  47. Using volcano plots and regularized-chi statistics in genetic association studies
  48. Diminishing return for increased Mappability with longer sequencing reads: implications of the k-mer distributions in the human genome
  49. Logistic Regression in Genomewide Association Analysis
  50. Editorial
  51. Human B-1 cells are not preplasmablasts: analysis of microarray data and other issues
  52. G + C Content Evolution in the Human Genome
  53. Absolute pitch exhibits phenotypic and genetic overlap with synesthesia
  54. Human repetitive sequence densities are mostly negatively correlated with R/Y-based nucleosome-positioning motifs and positively correlated with W/S-based motifs
  55. Genetic Marker
  56. Genome-Wide Association Study
  57. Periodic Distribution of a Putative Nucleosome Positioning Motif in Human, Nonhuman Primates, and Archaea: Mutual Information Analysis
  58. Human β‐defensin 1 (DEFB1) allele and genotype frequencies probably impact on ethnic susceptibility to atopic dermatitis
  59. VOLCANO PLOTS IN ANALYZING DIFFERENTIAL EXPRESSIONS WITH mRNA MICROARRAYS
  60. Analyses of baby name popularity distribution in U.S. for the last 131 years
  61. Fitting Chinese syllable-to-character mapping spectrum by the beta rank function
  62. Menzerath's law at the gene-exon level in the human genome
  63. Identification of outcome-correlated cytokine clusters in chronic lymphocytic leukemia
  64. On parameters of the human genome
  65. Fitting Ranked English and Spanish Letter Frequency Distribution in US and Mexican Presidential Speeches
  66. Increased synovial expression of nuclear receptors correlates with protection in pristane-induced arthritis: A possible novel genetically regulated homeostatic mechanism
  67. Intraclonal Complexity in Chronic Lymphocytic Leukemia: Fractions Enriched in Recently Born/Divided and Older/Quiescent Cells
  68. A mathematical framework for examining whether a minimum number of chiasmata is required per metacentric chromosome or chromosome arm in human
  69. Effective sample size: Quick estimation of the effect of related samples in genetic case–control association analyses
  70. Locus category based analysis of a large genome-wide association study of rheumatoid arthritis
  71. Fitting Ranked Linguistic Data with Two-Parameter Functions
  72. Characterization of structurally defined epitopes recognized by monoclonal antibodies produced by chronic lymphocytic leukemia B cells
  73. Localization of Type 1 Diabetes susceptibility in the ancestral haplotype 18.2 by high density SNP mapping
  74. Two-parameter characterization of chromosome-scale recombination rate
  75. FRACTAL CHARACTERIZATIONS OF MAX STATISTICAL DISTRIBUTION IN GENETIC ASSOCIATION STUDIES
  76. Blood autoantibody and cytokine profiles predict response to anti-tumor necrosis factor therapy in rheumatoid arthritis
  77. Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the human genome
  78. Copy-number-variation and copy-number-alteration region detection by cumulative plots
  79. Exploring case–control genetic association tests using phase diagrams
  80. Genome-Wide Association Scan Identifies Candidate Polymorphisms Associated with Differential Response to Anti-TNF Treatment in Rheumatoid Arthritis
  81. Comparison of two‐phase analyses for case–control genetic association studies
  82. Several Regions in the Major Histocompatibility Complex Confer Risk for Anti-CCP-Antibody Positive Rheumatoid Arthritis, Independent of the DRB1 Locus
  83. Cia5d regulates a new fibroblast-like synoviocyte invasion-associated gene expression signature
  84. A comparison of founder-only and all-pedigree-members genotype-expression association by regression analysis
  85. Three lectures on case control genetic association analysis
  86. TRAF1–C5as a Risk Locus for Rheumatoid Arthritis — A Genomewide Study
  87. STAT4and the Risk of Rheumatoid Arthritis and Systemic Lupus Erythematosus
  88. Reply to Henthorn and Deutsch: Ethnicity versus early environment: Comment on ‘Early Childhood Music Education and Predisposition to Absolute Pitch: Teasing Apart Genes and Environment’ by Peter K. Gregersen, Elena Kowalsky, Nina Kohn, and Elizabeth We...
  89. GENOTYPE-BASED CASE-CONTROL ANALYSIS, VIOLATION OF HARDY-WEINBERG EQUILIBRIUM, AND PHASE DIAGRAMS
  90. Elevated Serum Levels of Interferon-Regulated Chemokines Are Biomarkers for Active Human Systemic Lupus Erythematosus
  91. The-more-the-better and the-less-the-better
  92. Large-scale oscillation of structure-related DNA sequence features in human chromosome 21
  93. Overlapping Probabilities of Top Ranking Gene Lists, Hypergeometric Distribution, and Stringency of Gene Selection Criterion
  94. Microsatellite typing for DRB1 alleles: application to the analysis of HLA associations with rheumatoid arthritis
  95. Monoclonal antibody classification based on epitope-binding using differential antigen disruption
  96. High-density SNP analysis of 642 Caucasian families with rheumatoid arthritis identifies two new linkage regions on 11p12 and 2q33
  97. Inferring causal relationships among intermediate phenotypes and biomarkers: a case study of rheumatoid arthritis
  98. Does Logarithm Transformation of Microarray Data Affect Ranking Order of Differentially Expressed Genes?
  99. Comparing single-nucleotide polymorphism marker-based and microsatellite marker-based linkage analyses
  100. Regulation of anti–cyclic citrullinated peptide antibodies in rheumatoid arthritis: Contrasting effects of HLA–DR3 and the shared epitope alleles
  101. Peripheral blood gene expression profiling in rheumatoid arthritis
  102. Analysis ofCARD15/NOD2haplotypes fails to identify common variants associated with rheumatoid arthritis susceptibility
  103. Universal1∕fnoise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome
  104. Analysis of Families in the Multiple Autoimmune Disease Genetics Consortium (MADGC) Collection: the PTPN22 620W Allele Associates with Multiple Autoimmune Phenotypes
  105. Microarray Analyses of Peripheral Blood Cells Identifies Unique Gene Expression Signature in Psoriatic Arthritis
  106. The PTPN22 R620W polymorphism associates with RF positive rheumatoid arthritis in a dose-dependent manner but not with HLA-SE status
  107. An unusual 500,000 bases long oscillation of guanine and cytosine content in human chromosome 21
  108. Rapid self-organized criticality: Fractal evolution in extreme environments
  109. SPECTRAL ANALYSIS OF GUANINE AND CYTOSINE FLUCTUATIONS OF MOUSE GENOMIC DNA
  110. Identification of two novel female‐specific non–major histocompatibility complex loci regulating collagen‐induced arthritis severity and chronicity, and evidence of epistasis
  111. Extreme Value Distribution Based Gene Selection Criteria for Discriminant Microarray Data Analysis Using Logistic Regression
  112. Gene Discovery in Bladder Cancer Progression using cDNA Microarrays
  113. Isochores merit the prefix ‘iso’
  114. Gene selection criterion for discriminant microarray data analysis based on extreme value distributions
  115. Correlation between quantitative traits and correlation between corresponding LOD scores: detection of pleiotropic effects
  116. Reconstructing haplotypes in pedigrees: Importance of parental information
  117. Zipf's Law in Importance of Genes for Cancer Classification Using Microarray Data
  118. Are isochore sequences homogeneous?
  119. Simplifying the mosaic description of DNA sequences
  120. Dissecting the Genetic Complexity of the Association between Human Leukocyte Antigens and Rheumatoid Arthritis
  121. Applications of recursive segmentation to the analysis of DNA sequences
  122. Candidate genes involved in cardiovascular risk factors by a family‐based association study on the island of Kosrae, Federated States of Micronesia
  123. How Many Genes are Needed for a Discriminant Microarray Data Analysis
  124. Linkage disequilibrium and founder effect analysis of the NF1 gene in French Canadians from the Quebec population
  125. Delineating relative homogeneous G+C domains in DNA sequences
  126. New Stopping Criteria for Segmenting DNA Sequences
  127. DNA segmentation as a model selection process
  128. Marker Selection by Akaike Information Criterion and Bayesian Information Criterion
  129. Genotype analysis of theNF1 gene in the French Canadians from the Qu�bec population
  130. Two Approaches for Consolidating Results from Genome Scans of Complex Traits: Selection Methods and Scan Statistics
  131. A Complete Enumeration and Classification of Two-Locus Disease Models
  132. Statistical properties of open reading frames in complete genome sequences
  133. Design of artificial neural network and its applications to the analysis of alcoholism data
  134. Compositional Heterogeneity within, and Uniformity between, DNA Sequences of Yeast Chromosomes
  135. Low-Order Polynomial Trends of Female-to-Male Map Distance Ratios along Human Chromosomes
  136. The complexity of DNA
  137. The study of correlation structures of DNA sequences: a critical review
  138. Affected-sib-pair analyses of bipolar disorder using data on chromosome 18
  139. Understanding long-range correlations in DNA sequences
  140. DNA correlations
  141. Phenomenology of nonlocal cellular automata
  142. Transient behavior of cellular automaton rule 110
  143. GENERATING NONTRIVIAL LONG-RANGE CORRELATIONS AND 1/f SPECTRA BY REPLICATION AND MUTATION
  144. Long-Range Correlation and Partial 1/ f α Spectrum in a Noncoding DNA Sequence
  145. Random texts exhibit Zipf's-law-like word frequency distribution
  146. ABSENCE OF 1/f SPECTRA IN DOW JONES DAILY AVERAGE
  147. Expansion-modification systems: A model for spatial 1/fspectra
  148. Mutual information functions versus correlation functions
  149. Transition phenomena in cellular automata rule space
  150. Spatial 1/fSpectra in Open Dynamical Systems
  151. Complex patterns generated by next nearest neighbors cellular automata
  152. Fractal Dimension of Cantori