All Stories

  1. Step-by-step R code for accessing over 70,000 human RNA-seq samples using recount (Bioconductor)
  2. Improving the value of public RNA-seq expression data by phenotype prediction
  3. Reproducible RNA-seq analysis using recount2
  4. Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive
  5. Flexible expressed region analysis for RNA-seq with derfinder
  6. Resource with analysis-ready RNA-seq data for ~60k human samples (pre-print)
  7. regionReport: a R package for creating HTML reports for RNA-seq results (version 2: final)
  8. Rail-RNA applied to all public human RNA-seq data from the Sequence Read Archive (pre-print)
  9. Rail-RNA: scalable alignment software for RNA-seq (pre-print)
  10. regionReport: a R package for creating HTML reports for RNA-seq results (version 1)
  11. regionReport: a R package for creating HTML reports for RNA-seq results (pre-print)
  12. derfinder: software for annotation-agnostic RNA-seq differential expression (pre-print 2)
  13. First derfinder application to brain data spanning the human lifespan
  14. Book chapter about RNA-seq
  15. Species that interact with Bacillus subtilis in biofilm formation
  16. RegulonDB v7.0 including transcription start sites derived from high-throughput sequencing