All Stories

  1. On the suitability of using the diagonal Gaussian approximation in the calculation of the magnitude-based likelihood function

    Article • Acta Crystallographica Section D Structural Biology, April 2021, International Union of Crystallography

    Professor Vladimir Y. Lunin

  2. Introduction to crystallographic refinement of macromolecular atomic models

    Article • Crystallography Reviews, July 2019, Taylor & Francis

    Professor Vladimir Y. Lunin

  3. Mask-based approach to phasing of single-particle diffraction data. II. Likelihood-based selection criteria

    Article • Acta Crystallographica Section D Structural Biology, January 2019, International Union of Crystallography

    Professor Vladimir Y. Lunin

  4. The Use of Connected Masks for Reconstructing the Single Particle Image from X-Ray Diffraction Data. III. Maximum-Likelihood Based Strategies to Select Solution of the Phase Problem

    Article • Mathematical Biology and Bioinformatics, June 2018, Institute of Mathematical Problems of Biology of RAS (IMPB RAS)

    Professor Vladimir Y. Lunin

  5. Signaling ammonium across membranes through an ammonium sensor histidine kinase

    Article • Nature Communications, January 2018, Springer Science + Business Media

    Professor Vladimir Y. Lunin

  6. The Use of Connected Masks for Reconstructing the Single Particle Image from X-Ray Diffraction Data. III. Maximum-Likelihood Based Strategies to Select Solution of the Phase Problem

    Article • Mathematical Biology and Bioinformatics, December 2017, Institute of Mathematical Problems of Biology of RAS (IMPB RAS)

    Professor Vladimir Y. Lunin

  7. To the memory of Èmmanuil Èl'evich Shnol'

    Article • Russian Mathematical Surveys, February 2017, Institute of Physics Publishing

    Professor Vladimir Y. Lunin

  8. The biological crystallography without crystals

    Article • Mathematical Biology and Bioinformatics, January 2017, Institute of Mathematical Problems of Biology of RAS (IMPB RAS)

    Professor Vladimir Y. Lunin

  9. Mask-based approach to phasing of single-particle diffraction data

    Article • Acta Crystallographica Section D Structural Biology, January 2016, International Union of Crystallography

    Professor Vladimir Y. Lunin

  10. The Use of Connected Masks for Reconstructing the Single Particle Image from X-Ray Diffraction Data. II. The Dependence of the Accuracy of the Solution on the Sampling Step of Experimental Data

    Article • Mathematical Biology and Bioinformatics, December 2015, Institute of Mathematical Problems of Biology of RAS (IMPB RAS)

    Professor Vladimir Y. Lunin

  11. Article • April 2015, Institute of Mathematical Problems of Biology of RAS (IMPB RAS)

    Professor Vladimir Y. Lunin

  12. Efficient calculation of diffracted intensities in the case of nonstationary scattering by biological macromolecules under XFEL pulses

    Article • Acta Crystallographica Section D Biological Crystallography, January 2015, International Union of Crystallography

    Professor Vladimir Y. Lunin

  13. The use of connected masks for reconstructing the single particle image from X-ray diffraction data

    Article • Mathematical Biology and Bioinformatics, December 2014, Institute of Mathematical Problems of Biology of RAS (IMPB RAS)

    Professor Vladimir Y. Lunin

  14. Metrics for comparison of crystallographic maps

    Article • Acta Crystallographica Section D Biological Crystallography, September 2014, International Union of Crystallography

    Dr Pavel Afonine, Professor Vladimir Y. Lunin

  15. Femtosecond X-ray free-electron lasers: A new tool for studying nanocrystals and single macromolecules

    Article • Russian Journal of Physical Chemistry B, July 2014, Pleiades Publishing Ltd

    Professor Vladimir Y. Lunin

  16. New possibilities of X-ray nanocrystallography of biological macromolecules based on X-ray free-electron lasers

    Article • Russian Journal of Physical Chemistry B, July 2014, Pleiades Publishing Ltd

    Professor Vladimir Y. Lunin

  17. Advancing Methods for Biomolecular Crystallography

    Article • January 2013, Springer Science + Business Media

    Professor Vladimir Y. Lunin

  18. Detection of alternative conformations by unrestrained refinement

    Article • Acta Crystallographica Section D Biological Crystallography, August 2012, International Union of Crystallography

    Professor Vladimir Y. Lunin

  19. A noncrystallographic screw axis parallel to a twin axis can corrupt intensity statistics

    Article • Acta Crystallographica Section D Biological Crystallography, May 2012, International Union of Crystallography

    Professor Vladimir Y. Lunin

  20. Low-resolution structure determination of Na+-translocating NADH:ubiquinone oxidoreductase fromVibrio choleraebyab initiophasing and electron microscopy

    Article • Acta Crystallographica Section D Biological Crystallography, May 2012, International Union of Crystallography

    Professor Vladimir Y. Lunin

  21. X-ray-induced deterioration of disulfide bridges at atomic resolution

    Article • Acta Crystallographica Section D Biological Crystallography, September 2010, International Union of Crystallography

    Professor Vladimir Y. Lunin

  22. Cluster analysis for phasing with molecular replacement: a feasibility study

    Article • Acta Crystallographica Section D Biological Crystallography, June 2009, International Union of Crystallography

    Professor Vladimir Y. Lunin

  23. X-Ray-Radiation-Induced Cooperative Atomic Movements in Protein

    Article • Journal of Molecular Biology, April 2009, Elsevier

    Professor Vladimir Y. Lunin

  24. On macromolecular refinement at subatomic resolution with interatomic scatterers

    Article • Acta Crystallographica Section D Biological Crystallography, October 2007, International Union of Crystallography

    Dr Pavel Afonine, Professor Vladimir Y. Lunin

  25. Estimates of the twinning fraction for macromolecular crystals using statistical models accounting for experimental errors

    Article • Acta Crystallographica Section D Biological Crystallography, October 2007, International Union of Crystallography

    Professor Vladimir Y. Lunin

  26. Ultrahigh-resolution study of protein atomic displacement parameters at cryotemperatures obtained with a helium cryostat

    Article • Acta Crystallographica Section D Biological Crystallography, November 2006, International Union of Crystallography

    Professor Vladimir Y. Lunin

  27. Low-resolutionab initiophasing ofSarcocystis murislectin SML-2

    Article • Acta Crystallographica Section D Biological Crystallography, April 2006, International Union of Crystallography

    Dr Edgar Franz Weckert, Professor Vladimir Y. Lunin

  28. Some Applications of Dummy Point Scatterers for Phasing in Macromolecular X-Ray Crystallography

    Article • January 2005, Springer Science + Business Media

    Dr Pavel Afonine, Professor Vladimir Y. Lunin

  29. The use of dummy atoms in X-ray macromolecular crystallography

    Article • Crystallography Reviews, October 2004, Taylor & Francis

    Professor Vladimir Y. Lunin

  30. Ab initiophasing based on topological restraints: automated determination of the space group and the number of molecules in the unit cell

    Article • Acta Crystallographica Section D Biological Crystallography, August 2004, International Union of Crystallography

    Professor Vladimir Y. Lunin

  31. On the possibility of the observation of valence electron density for individual bonds in proteins in conventional difference maps

    Article • Acta Crystallographica Section D Biological Crystallography, January 2004, International Union of Crystallography

    Dr Pavel Afonine, Professor Vladimir Y. Lunin

  32. Connectivity-basedab initiophasing: from low resolution to a secondary structure

    Article • Acta Crystallographica Section D Biological Crystallography, September 2003, International Union of Crystallography

    Professor Vladimir Y. Lunin

  33. Connectivity-basedab initiophasing at different solvent levels

    Article • Acta Crystallographica Section D Biological Crystallography, April 2003, International Union of Crystallography

    Professor Vladimir Y. Lunin

  34. MLMF: least-squares approximation of likelihood-based refinement criteria

    Article • Journal of Applied Crystallography, January 2003, International Union of Crystallography

    Dr Pavel Afonine, Professor Vladimir Y. Lunin

  35. Likelihood-based refinement. I. Irremovable model errors

    Article • Acta Crystallographica Section A Foundations of Crystallography, May 2002, International Union of Crystallography

    Dr Pavel Afonine, Professor Vladimir Y. Lunin

  36. Direct phasing by binary integer programming

    Article • Acta Crystallographica Section A Foundations of Crystallography, May 2002, International Union of Crystallography

    Professor Vladimir Y. Lunin

  37. Ab initio phasing starting from low resolution

    Article • Zeitschrift für Kristallographie - Crystalline Materials, January 2002, De Gruyter

    Professor Vladimir Y. Lunin

  38. Fast differentiation algorithm and efficient calculation of the exact matrix of second derivatives

    Article • Acta Crystallographica Section A Foundations of Crystallography, June 2001, International Union of Crystallography

    Professor Vladimir Y. Lunin

  39. Low-resolution data analysis for low-density lipoprotein particle

    Article • Acta Crystallographica Section D Biological Crystallography, January 2001, International Union of Crystallography

    Professor Vladimir Y. Lunin

  40. Ab initio low-resolution phasing in crystallography of macromolecules by maximization of likelihood

    Article • Acta Crystallographica Section D Biological Crystallography, October 2000, International Union of Crystallography

    Professor Vladimir Y. Lunin

  41. Density constraints and low-resolution phasing

    Article • Acta Crystallographica Section D Biological Crystallography, October 2000, International Union of Crystallography

    Professor Vladimir Y. Lunin

  42. Low-resolution ab initio phasing: problems and advances

    Article • Acta Crystallographica Section D Biological Crystallography, October 2000, International Union of Crystallography

    Professor Vladimir Y. Lunin

  43. Connectivity properties of high-density regions andab initiophasing at low resolution

    Article • Acta Crystallographica Section A Foundations of Crystallography, July 2000, International Union of Crystallography

    Professor Vladimir Y. Lunin

  44. Atomic structure of theSerratia marcescensendonuclease at 1.1 Å resolution and the enzyme reaction mechanism

    Article • Acta Crystallographica Section D Biological Crystallography, May 2000, International Union of Crystallography

    Dr Vladimir V Lunin, Dr Konstantin Michailovich Polyakov, Professor Vladimir Y. Lunin

  45. Reliability of maximum likelihood-based figures of merit

    Article • Crystallography Reports, March 2000, Pleiades Publishing Ltd

    Professor Vladimir Y. Lunin

  46. Fixed-scale wavelet-type approximation of periodic density distributions

    Article • Acta Crystallographica Section A Foundations of Crystallography, January 2000, International Union of Crystallography

    Professor Vladimir Y. Lunin

  47. Seminvariant density decomposition and connectivity analysis and their application to very low resolution macromolecular phasing

    Article • Acta Crystallographica Section A Foundations of Crystallography, September 1999, International Union of Crystallography

    Professor Vladimir Y. Lunin

  48. A likelihood-based search for the macromolecular position in the crystalline unit cell

    Article • Acta Crystallographica Section A Foundations of Crystallography, July 1999, International Union of Crystallography

    Professor Vladimir Y. Lunin

  49. Emmanuil El'evich Shnol' (on his 70th birthday)

    Article • Russian Mathematical Surveys, June 1999, Institute of Physics Publishing

    Professor Vladimir Y. Lunin

  50. On the Ab Initio Solution of the Phase Problem for Macromolecules at Very Low Resolution. II. Generalized Likelihood Based Approach to Cluster Discrimination

    Article • Acta Crystallographica Section D Biological Crystallography, September 1998, International Union of Crystallography

    Professor Vladimir Y. Lunin

  51. Three-dimensional structure of Serratia marcescens nuclease at 1.7 Å resolution and mechanism of its action

    Article • FEBS Letters, July 1997, Wiley

    Dr Vladimir V Lunin, Professor Vladimir Y. Lunin

  52. A procedure compatible withX-PLORfor the calculation of electron-density maps weighted using anR-free-likelihood approach

    Article • Journal of Applied Crystallography, December 1996, International Union of Crystallography

    Professor Vladimir Y. Lunin

  53. The Map Correlation Coefficient for Optimally Superposed Maps

    Article • Acta Crystallographica Section A Foundations of Crystallography, May 1996, International Union of Crystallography

    Professor Vladimir Y. Lunin

  54. On theab initiosolution of the phase problem for macromolecules at very low resolution: the few atoms model method

    Article • Acta Crystallographica Section D Biological Crystallography, November 1995, International Union of Crystallography

    Professor Vladimir Y. Lunin

  55. R-free likelihood-based estimates of errors for phases calculated from atomic models

    Article • Acta Crystallographica Section A Foundations of Crystallography, November 1995, International Union of Crystallography

    Professor Vladimir Y. Lunin

  56. Mean phase error and the map-correlation coefficient

    Article • Acta Crystallographica Section D Biological Crystallography, November 1993, International Union of Crystallography

    Professor Vladimir Y. Lunin

  57. The FROG PC series: programs for electron-density and model investigations for proteins

    Article • Journal of Applied Crystallography, April 1993, International Union of Crystallography

    Professor Vladimir Y. Lunin

  58. Electron-denisty histograms and the phase problem

    Article • Acta Crystallographica Section D Biological Crystallography, January 1993, International Union of Crystallography

    Professor Vladimir Y. Lunin

  59. Crystal structure of calf eye lens gamma-crystallin IIIb at 2·5 Å resolution: Its relation to function

    Article • Experimental Eye Research, September 1991, Elsevier

    Professor Vladimir Y. Lunin

  60. Frequency-restrained structure-factor refinement. II. Comparison of methods

    Article • Acta Crystallographica Section A Foundations of Crystallography, May 1991, International Union of Crystallography

    Professor Vladimir Y. Lunin

  61. Frequency-restrained structure-factor refinement. I. Histogram simulation

    Article • Acta Crystallographica Section A Foundations of Crystallography, January 1991, International Union of Crystallography

    Professor Vladimir Y. Lunin

  62. Direct low-resolution phasing from electron-density histograms in protein crystallography

    Article • Acta Crystallographica Section A Foundations of Crystallography, July 1990, International Union of Crystallography

    Professor Vladimir Y. Lunin

  63. FROG– high-speed restraint–constraint refinement program for macromolecular structure

    Article • Journal of Applied Crystallography, October 1989, International Union of Crystallography

    Professor Vladimir Y. Lunin

  64. The calculation of the second moments for the values of Fourier syntheses with random structure factors

    Article • Acta Crystallographica Section A Foundations of Crystallography, August 1989, International Union of Crystallography

    Professor Vladimir Y. Lunin

  65. Bounding a molecule in a noisy synthesis

    Article • Acta Crystallographica Section A Foundations of Crystallography, January 1989, International Union of Crystallography

    Professor Vladimir Y. Lunin

  66. Use of the information on electron density distribution in macromolecules

    Article • Acta Crystallographica Section A Foundations of Crystallography, March 1988, International Union of Crystallography

    Professor Vladimir Y. Lunin

  67. Program construction for macromolecule atomic model refinement based on the fast Fourier transform and fast differentiation algorithms; erratum

    Article • Acta Crystallographica Section A Foundations of Crystallography, January 1986, International Union of Crystallography

    Professor Vladimir Y. Lunin

  68. Use of the fast differentiation algorithm for phase refinement in protein crystallography

    Article • Acta Crystallographica Section A Foundations of Crystallography, November 1985, International Union of Crystallography

    Professor Vladimir Y. Lunin

  69. Program construction for macromolecule atomic model refinement based on the fast Fourier transform and fast differentiation algorithms

    Article • Acta Crystallographica Section A Foundations of Crystallography, July 1985, International Union of Crystallography

    Professor Vladimir Y. Lunin

  70. Phase improvement in protein crystallography using a mixed electron density model

    Article • Acta Crystallographica Section A Foundations of Crystallography, March 1985, International Union of Crystallography

    Professor Vladimir Y. Lunin

  71. Improvement of protein phases by coarse model modification

    Article • Acta Crystallographica Section A Foundations of Crystallography, May 1984, International Union of Crystallography

    Professor Vladimir Y. Lunin

  72. Structure of γ-crystallin IIIb from calf lens at 5 Å resolution

    Article • FEBS Letters, September 1980, Wiley

    Professor Vladimir Y. Lunin