All Stories

  1. DNA Conformational Flexibility Descriptors Improve Transcription Factor Binding Prediction Across the Protein Families

    Article • July 2025, Cold Spring Harbor Laboratory Press

    Dr Venakata Rajesh Yella

  2. Comparative genomic analysis reveals distinct virulence and resistance mechanisms in 21 bacterial fish pathogens

    Article • Microbial Pathogenesis, December 2024, Elsevier

    Dr Venakata Rajesh Yella

  3. Dissecting non-B DNA structural motifs in untranslated regions of eukaryotic genomes

    Article • Genomics & Informatics, November 2024, Springer Science + Business Media

    Dr Venakata Rajesh Yella

  4. Discerning the Role of DNA Sequence, Shape, and Flexibility in Recognition by Drosophila Transcription Factors

    Article • ACS Chemical Biology, June 2024, American Chemical Society (ACS)

    Dr Venakata Rajesh Yella

  5. MLDSPP: Bacterial Promoter Prediction Tool Using DNA Structural Properties with Machine Learning and Explainable AI

    Article • Journal of Chemical Information and Modeling, January 2024, American Chemical Society (ACS)

    Dr Venakata Rajesh Yella

  6. Computational analysis on the dissemination of non-B DNA structural motifs in promoter regions of 1180 cellular genomes

    Article • Biochimie, November 2023, Elsevier

    Dr Venakata Rajesh Yella

  7. DNA structural properties of DNA binding sites for 21 transcription factors in the mycobacterial genome

    Article • Frontiers in Cellular and Infection Microbiology, June 2023, Frontiers

    Dr Venakata Rajesh Yella

  8. Nucleic acid-based therapeutics for dermal wound healing

    Article • International Journal of Biological Macromolecules, November 2022, Elsevier

    Dr Venakata Rajesh Yella

  9. Evolution of machine learning in biosciences: A bibliometric network analysis

    Article • Journal of Applied Biology & Biotechnology, July 2022, Journal of Applied Pharmaceutical Science

    Dr Venakata Rajesh Yella

  10. Delineation of the DNA Structural Features of Eukaryotic Core Promoter Classes

    Article • ACS Omega, February 2022, American Chemical Society (ACS)

    Dr Venakata Rajesh Yella

  11. DeePromClass: Delineator for Eukaryotic Core Promoters employing Deep Neural Networks

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, January 2022, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Venakata Rajesh Yella

  12. Symphony of the DNA flexibility and sequence environment orchestrates p53 binding to its responsive elements

    Article • Gene, November 2021, Elsevier

    Dr Venakata Rajesh Yella, Dr Umasankar Kulandaivelu

  13. Analysis of nucleoid‐associated protein‐binding regions reveals DNA structural features influencing genome organization in Mycobacterium tuberculosis

    Article • FEBS Letters, August 2021, Wiley

    Dr Venakata Rajesh Yella

  14. G-quadruplex motifs are functionally conserved in cis-regulatory regions of pathogenic bacteria: An in-silico evaluation

    Article • Biochimie, May 2021, Elsevier

    Dr Venakata Rajesh Yella

  15. Delving into Eukaryotic Origins of Replication Using DNA Structural Features

    Article • ACS Omega, June 2020, American Chemical Society (ACS)

    Dr Venakata Rajesh Yella

  16. Strategies toward development of biodegradable hydrogels for biomedical applications

    Article • Polymer-Plastics Technology and Materials, January 2020, Taylor & Francis

    Dr Venakata Rajesh Yella

  17. Flexibility and structure of flanking DNA impact transcription factor affinity for its core motif

    Article • Nucleic Acids Research, November 2018, Oxford University Press (OUP)

    Dr Venakata Rajesh Yella

  18. Identification of promoters in Eukaryotic DNA sequences by applying DNA stability as a criterion

    Article • Scientific Reports, March 2018, Springer Science + Business Media

    Dr Venakata Rajesh Yella

  19. DNA stability, bendability and curvature of eukaryotic TATA-containing and TATA-less promoter DNA

    Article • FEBS Open Bio, February 2017, Wiley

    Professor Manju Bansal, Dr Venakata Rajesh Yella

  20. DNA Structure and Promoter Engineering

    Article • December 2014, Springer Science + Business Media

    Dr Venakata Rajesh Yella

  21. Computational Identification of promoter DNA sequences in eukaryotes

    Article • December 2014, Springer Science + Business Media

    Dr Venakata Rajesh Yella

  22. Role of DNA sequence based structural features of promoters in transcription initiation and gene expression

    Article • Current Opinion in Structural Biology, April 2014, Elsevier

    Dr Venakata Rajesh Yella

  23. DNA STRUCTURAL FEATURES AND ARCHITECTURE OF PROMOTER REGIONS PLAY A ROLE IN GENE RESPONSIVENESS OF S. cerevisiae

    Article • Journal of Bioinformatics and Computational Biology, December 2013, World Scientific Pub Co Pte Lt

    Dr Venakata Rajesh Yella