All Stories

  1. DNA conformational flexibility descriptors improve transcription factor binding prediction across diverse transcription factor families

    Article • Genome Research, May 2026, Cold Spring Harbor Laboratory Press

    Dr Venakata Rajesh Yella

  2. DNA Conformational Flexibility Descriptors Improve Transcription Factor Binding Prediction Across the Protein Families

    Article • July 2025, Cold Spring Harbor Laboratory Press

    Dr Venakata Rajesh Yella

  3. Quantifying the contribution of DNA conformational flexibility to transcription factor binding on nucleosomal DNA uncovers indirect readout across diverse TF families

    Article • May 2025, openRxiv

    Dr Venakata Rajesh Yella

  4. Comparative genomic analysis reveals distinct virulence and resistance mechanisms in 21 bacterial fish pathogens

    Article • Microbial Pathogenesis, December 2024, Elsevier

    Dr Venakata Rajesh Yella

  5. Dissecting non-B DNA structural motifs in untranslated regions of eukaryotic genomes

    Article • Genomics & Informatics, November 2024, Springer Science + Business Media

    Dr Venakata Rajesh Yella

  6. Discerning the Role of DNA Sequence, Shape, and Flexibility in Recognition by Drosophila Transcription Factors

    Article • ACS Chemical Biology, June 2024, American Chemical Society (ACS)

    Dr Venakata Rajesh Yella

  7. MLDSPP: Bacterial Promoter Prediction Tool Using DNA Structural Properties with Machine Learning and Explainable AI

    Article • Journal of Chemical Information and Modeling, January 2024, American Chemical Society (ACS)

    Dr Venakata Rajesh Yella

  8. Computational analysis on the dissemination of non-B DNA structural motifs in promoter regions of 1180 cellular genomes

    Article • Biochimie, November 2023, Elsevier

    Dr Venakata Rajesh Yella

  9. DNA structural properties of DNA binding sites for 21 transcription factors in the mycobacterial genome

    Article • Frontiers in Cellular and Infection Microbiology, June 2023, Frontiers

    Dr Venakata Rajesh Yella

  10. Nucleic acid-based therapeutics for dermal wound healing

    Article • International Journal of Biological Macromolecules, November 2022, Elsevier

    Dr Venakata Rajesh Yella

  11. Evolution of machine learning in biosciences: A bibliometric network analysis

    Article • Journal of Applied Biology & Biotechnology, July 2022, Journal of Applied Pharmaceutical Science

    Dr Venakata Rajesh Yella

  12. Delineation of the DNA Structural Features of Eukaryotic Core Promoter Classes

    Article • ACS Omega, February 2022, American Chemical Society (ACS)

    Dr Venakata Rajesh Yella

  13. DeePromClass: Delineator for Eukaryotic Core Promoters employing Deep Neural Networks

    Article • IEEE/ACM Transactions on Computational Biology and Bioinformatics, January 2022, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Venakata Rajesh Yella

  14. Symphony of the DNA flexibility and sequence environment orchestrates p53 binding to its responsive elements

    Article • Gene, November 2021, Elsevier

    Dr Venakata Rajesh Yella, Dr Umasankar Kulandaivelu

  15. Analysis of nucleoid‐associated protein‐binding regions reveals DNA structural features influencing genome organization in Mycobacterium tuberculosis

    Article • FEBS Letters, August 2021, Wiley

    Dr Venakata Rajesh Yella

  16. G-quadruplex motifs are functionally conserved in cis-regulatory regions of pathogenic bacteria: An in-silico evaluation

    Article • Biochimie, May 2021, Elsevier

    Dr Venakata Rajesh Yella

  17. Delving into Eukaryotic Origins of Replication Using DNA Structural Features

    Article • ACS Omega, June 2020, American Chemical Society (ACS)

    Dr Venakata Rajesh Yella

  18. Strategies toward development of biodegradable hydrogels for biomedical applications

    Article • Polymer-Plastics Technology and Materials, January 2020, Taylor & Francis

    Dr Venakata Rajesh Yella

  19. Flexibility and structure of flanking DNA impact transcription factor affinity for its core motif

    Article • Nucleic Acids Research, November 2018, Oxford University Press (OUP)

    Dr Venakata Rajesh Yella

  20. Identification of promoters in Eukaryotic DNA sequences by applying DNA stability as a criterion

    Article • Scientific Reports, March 2018, Springer Science + Business Media

    Dr Venakata Rajesh Yella

  21. DNA stability, bendability and curvature of eukaryotic TATA-containing and TATA-less promoter DNA

    Article • FEBS Open Bio, February 2017, Wiley

    Professor Manju Bansal, Dr Venakata Rajesh Yella

  22. DNA Structure and Promoter Engineering

    Article • December 2014, Springer Science + Business Media

    Dr Venakata Rajesh Yella

  23. Computational Identification of promoter DNA sequences in eukaryotes

    Article • December 2014, Springer Science + Business Media

    Dr Venakata Rajesh Yella

  24. Role of DNA sequence based structural features of promoters in transcription initiation and gene expression

    Article • Current Opinion in Structural Biology, April 2014, Elsevier

    Dr Venakata Rajesh Yella

  25. DNA STRUCTURAL FEATURES AND ARCHITECTURE OF PROMOTER REGIONS PLAY A ROLE IN GENE RESPONSIVENESS OF S. cerevisiae

    Article • Journal of Bioinformatics and Computational Biology, December 2013, World Scientific Pub Co Pte Lt

    Dr Venakata Rajesh Yella