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  1. Range-aware graph positional encoding via high-order pretraining: theory and practice

    Article • Machine Learning Science and Technology, November 2025, Institute of Physics Publishing

    Prof. Truong Son Hy

  2. EvoSynth: Enabling Multi-Target Drug Discovery through Latent Evolutionary Optimization and Synthesis-Aware Prioritization

    Article • November 2025, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  3. FFTMed: leveraging fast-fourier transform for a lightweight and adversarial-resilient medical image segmentation framework

    Article • Scientific Reports, October 2025, Springer Science + Business Media

    Prof. Truong Son Hy

  4. 24 th International Workshop on Data Mining in Bioinformatics (BIOKDD 2025)

    Article • August 2025, ACM (Association for Computing Machinery)

    Da Yan, Prof. Mohammed J Zaki, Prof. Truong Son Hy

  5. Effective Design of Sequences with Limited Data

    Article • July 2025, ACM (Association for Computing Machinery)

    Prof. Truong Son Hy, Thanh Tran

  6. A Knowledge Graph for Vietnamese Traditional Medicine and Its Use in AI Question Answering

    Article • ACM Transactions on Asian and Low-Resource Language Information Processing, June 2025, ACM (Association for Computing Machinery)

    Prof. Truong Son Hy

  7. SilVar-Med: A Speech-Driven Visual Language Model for Explainable Abnormality Detection in Medical Imaging

    Article • June 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Prof. Truong Son Hy

  8. Effective Context Modeling Framework for Emotion Recognition in Conversations

    Article • April 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Prof. Truong Son Hy

  9. Machine learning for automated electrical penetration graph analysis of aphid feeding behavior: Accelerating research on insect-plant interactions

    Article • PLOS One, April 2025, PLOS

    Prof. Truong Son Hy

  10. Protein Design by Directed Evolution Guided by Large Language Models

    Article • IEEE Transactions on Evolutionary Computation, April 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Prof. Truong Son Hy

  11. LatentDE: latent-based directed evolution for protein sequence design

    Article • Machine Learning Science and Technology, March 2025, Institute of Physics Publishing

    Prof. Truong Son Hy

  12. LANTERN: Leveraging Large Language Models and Transformers for Enhanced Molecular Interactions

    Article • February 2025, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  13. DrugPipe: Generative artificial intelligence-assisted virtual screening pipeline for generalizable and efficient drug repurposing

    Article • Biology Methods and Protocols, January 2025, Oxford University Press (OUP)

    Viet Thanh Duy Nguyen, Prof. Truong Son Hy

  14. Hybridising Reinforcement Learning and Heuristics for Hierarchical Directed Arc Routing Problems

    Article • January 2025, Elsevier

    Prof. Truong Son Hy

  15. MultiMed: Multilingual Medical Speech Recognition via Attention Encoder Decoder

    Article • January 2025, Association for Computational Linguistics (ACL)

    Prof. Truong Son Hy

  16. Sentiment Reasoning for Healthcare

    Article • January 2025, Association for Computational Linguistics (ACL)

    Prof. Truong Son Hy

  17. Generative AI-assisted Virtual Screening Pipeline for Generalizable and Efficient Drug Repurposing

    Article • December 2024, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  18. DiscoEPG: A Python package for characterization of insect electrical penetration graph (EPG) signals

    Article • December 2024, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  19. ProteinReDiff: Ligand-binding Proteins Redesign by Equivariant Diffusion-based Generative Models

    Article • Structural Dynamics, November 2024, American Institute of Physics

    Viet Thanh Duy Nguyen, Prof. Truong Son Hy

  20. LightMed: A Light-weight and Robust FFT-Based Model for Adversarially Resilient Medical Image Segmentation

    Article • September 2024, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  21. Real-time Speech Summarization for Medical Conversations

    Article • September 2024, International Speech Communication Association

    Prof. Truong Son Hy

  22. VieMedKG: Knowledge Graph and Benchmark for Traditional Vietnamese Medicine

    Article • August 2024, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  23. MGLEP: Multimodal Graph Learning for Modeling Emerging Pandemics with Big Data

    Article • Scientific Reports, July 2024, Springer Science + Business Media

    Prof. Truong Son Hy

  24. Machine learning for characterizing plant-insect interactions through electrical penetration graphic signal

    Article • June 2024, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  25. Multimodal protein representation learning and target-aware variational auto-encoders for protein-binding ligand generation

    Article • Machine Learning Science and Technology, April 2024, Institute of Physics Publishing

    Prof. Truong Son Hy

  26. Complex-based Ligand-Binding Proteins Redesign by Equivariant Diffusion-based Generative Models

    Article • April 2024, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  27. Latent-based Directed Evolution accelerated by Gradient Ascent for Protein Sequence Design

    Article • April 2024, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  28. Multimodal pretraining for unsupervised protein representation learning

    Article • Biology Methods and Protocols, January 2024, Oxford University Press (OUP)

    Prof. Truong Son Hy

  29. Multimodal Pretraining for Unsupervised Protein Representation Learning

    Article • December 2023, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  30. Protein Design by Directed Evolution Guided by Large Language Models

    Article • November 2023, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  31. Multimodal Protein Representation Learning and Target-aware Variational Auto-encoders for Protein-binding Ligand Generation

    Article • November 2023, Research Square

    Prof. Truong Son Hy

  32. Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning

    Article • August 2023, Cold Spring Harbor Laboratory Press

    Prof. Truong Son Hy

  33. Multiresolution graph transformers and wavelet positional encoding for learning long-range and hierarchical structures

    Article • The Journal of Chemical Physics, July 2023, American Institute of Physics

    Prof. Truong Son Hy

  34. Multiresolution equivariant graph variational autoencoder

    Article • Machine Learning Science and Technology, March 2023, Institute of Physics Publishing

    Prof. Truong Son Hy

  35. Predicting molecular properties with covariant compositional networks

    Article • The Journal of Chemical Physics, June 2018, American Institute of Physics

    Prof. Truong Son Hy