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  1. Atrapos: Real-time Evaluation of Metapath Query Workloads

    Article • April 2023, ACM (Association for Computing Machinery)

    Dr Thanasis Vergoulis

  2. 3rd International Workshop on Scientific Knowledge Representation, Discovery, and Assessment (Sci-K 2023)

    Article • April 2023, ACM (Association for Computing Machinery)

    Misha Teplitskiy, Dr Thanasis Vergoulis

  3. Sci-K 2022 - International Workshop on Scientific Knowledge: Representation, Discovery, and Assessment

    Article • April 2022, ACM (Association for Computing Machinery)

    Dr Thanasis Vergoulis

  4. SurvAnnT: Facilitating Community-Led Scientific Surveys and Annotations

    Article • January 2022, Springer Science + Business Media

    Dr Thanasis Vergoulis

  5. VeTo+: improved expert set expansion in academia

    Article • International Journal on Digital Libraries, November 2021, Springer Science + Business Media

    Dr Thanasis Vergoulis

  6. VeTo-web: A Recommendation Tool for the Expansion of Sets of Scholars

    Article • September 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Thanasis Vergoulis

  7. Bias in miRNA enrichment analysis related to gene functional annotations

    Article • August 2021, Cold Spring Harbor Laboratory Press

    Dr Thanasis Vergoulis

  8. SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines

    Article • July 2021, ACM (Association for Computing Machinery)

    Martin Reczko, Dr Thanasis Vergoulis

  9. BIP! DB: A Dataset of Impact Measures for Scientific Publications

    Article • April 2021, ACM (Association for Computing Machinery)

    Ms Natalia Manola, Dr Thanasis Vergoulis

  10. Visualising Scientific Topic Evolution

    Article • April 2021, ACM (Association for Computing Machinery)

    Dr Thanasis Vergoulis

  11. Impact-Based Ranking of Scientific Publications: A Survey and Experimental Evaluation

    Article • IEEE Transactions on Knowledge and Data Engineering, April 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Thanasis Vergoulis

  12. Ranking Papers by their Short-Term Scientific Impact

    Article • April 2021, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Thanasis Vergoulis

  13. Further improvements on estimating the popularity of recently published papers

    Article • Quantitative Science Studies, January 2021, The MIT Press

    Dr Thanasis Vergoulis

  14. New trends in scientific knowledge graphs and research impact assessment

    Article • Quantitative Science Studies, January 2021, The MIT Press

    Dr Thanasis Vergoulis

  15. A Cloud-Native NGS Data Processing and Annotation Platform

    Article • January 2021, Springer Science + Business Media

    Dr Thanasis Vergoulis

  16. BIP4COVID19: Releasing impact measures for articles relevant to COVID-19

    Article • Quantitative Science Studies, January 2021, The MIT Press

    Dr Thanasis Vergoulis

  17. SPHINX

    Article • Proceedings of the VLDB Endowment, August 2020, ACM (Association for Computing Machinery)

    Dr Thanasis Vergoulis

  18. Efficient Calculation of Empirical P-values for Association Testing of Binary Classifications

    Article • July 2020, ACM (Association for Computing Machinery)

    Dr Thanasis Vergoulis

  19. BIP4COVID19: Releasing impact measures for articles relevant to COVID-19

    Article • April 2020, Cold Spring Harbor Laboratory Press

    Dr Thanasis Vergoulis

  20. Databases and Information Systems in the AI Era: Contributions from ADBIS, TPDL and EDA 2020 Workshops and Doctoral Consortium

    Article • January 2020, Springer Science + Business Media

    Maria Bielikova, Dr Thanasis Vergoulis

  21. ArtSim: Improved Estimation of Current Impact for Recent Articles

    Article • January 2020, Springer Science + Business Media

    Dr Thanasis Vergoulis

  22. VeTo: Expert Set Expansion in Academia

    Article • January 2020, Springer Science + Business Media

    Dr Thanasis Vergoulis

  23. BIP! Finder

    Article • November 2019, ACM (Association for Computing Machinery)

    Dr Thanasis Vergoulis

  24. A Study on the Readability of Scientific Publications

    Article • January 2019, Springer Science + Business Media

    Dr Thanasis Vergoulis

  25. SciTo Trends: Visualising Scientific Topic Trends

    Article • January 2019, Springer Science + Business Media

    Dr Thanasis Vergoulis

  26. DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions

    Article • Nucleic Acids Research, November 2017, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  27. BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets

    Article • BMC Bioinformatics, September 2017, Springer Science + Business Media

    Dr Thanasis Vergoulis

  28. DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data

    Article • Nucleic Acids Research, May 2016, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  29. DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts

    Article • Nucleic Acids Research, November 2015, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  30. DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators

    Article • Nucleic Acids Research, November 2015, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  31. TarMiner

    Article • June 2015, ACM (Association for Computing Machinery)

    Dr Thanasis Vergoulis

  32. DIANA-miRPath v3.0: deciphering microRNA function with experimental support

    Article • Nucleic Acids Research, May 2015, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  33. MirPub v2: Towards Ranking and Refining miRNA Publication Search Results

    Article • January 2015, Springer Science + Business Media

    Dr Thanasis Vergoulis

  34. mirPub: a database for searching microRNA publications

    Article • Bioinformatics, December 2014, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  35. DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA:mRNA interactions

    Article • Nucleic Acids Research, November 2014, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  36. MR-microT: a MapReduce (Cloud-based), real-time miRNA target prediction platform based on microT

    Article • January 2014, ACM (Association for Computing Machinery)

    Dr Thanasis Vergoulis

  37. DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows

    Article • Nucleic Acids Research, May 2013, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  38. DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways

    Article • Nucleic Acids Research, May 2012, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  39. Approximate regional sequence matching for genomic databases

    Article • The VLDB Journal, March 2012, Springer Science + Business Media

    Dr Thanasis Vergoulis

  40. TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction

    Article • January 2012, Springer Science + Business Media

    Dr Thanasis Vergoulis

  41. TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support

    Article • Nucleic Acids Research, December 2011, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  42. DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association

    Article • Nucleic Acids Research, May 2011, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  43. miRGen 2.0: a database of microRNA genomic information and regulation

    Article • Nucleic Acids Research, November 2009, Oxford University Press (OUP)

    Professor Ivo Grosse, Dr Thanasis Vergoulis

  44. DIANA-microT web server: elucidating microRNA functions through target prediction

    Article • Nucleic Acids Research, April 2009, Oxford University Press (OUP)

    Dr Thanasis Vergoulis

  45. Accurate microRNA target prediction correlates with protein repression levels

    Article • BMC Bioinformatics, January 2009, Springer Science + Business Media

    Dr Thanasis Vergoulis