All Stories

  1. Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility

    Article • PLoS Genetics, March 2025, PLOS

    Shuji Shigenobu

  2. Genomic and transcriptomic analyses of the subterranean termite Reticulitermes speratus : Gene duplication facilitates social evolution

    Article • Proceedings of the National Academy of Sciences, January 2022, Proceedings of the National Academy of Sciences

    Shuji Shigenobu

  3. High-Quality Genome Sequence of the Root-Knot Nematode Meloidogyne arenaria Genotype A2-O

    Article • Genome Announcements, June 2018, ASM Journals

    Shuji Shigenobu

  4. Methylome Diversification through Changes in DNA Methyltransferase Sequence Specificity

    Article • PLoS Genetics, April 2014, PLOS

    Shuji Shigenobu

  5. Development of New PCR Primers by Comparative Genomics for the Detection of Helicobacter suis in Gastric Biopsy Specimens

    Article • Helicobacter, March 2014, Wiley

    Shuji Shigenobu, Professor Freddy Haesebrouck

  6. Sex Chromosome Turnover Contributes to Genomic Divergence between Incipient Stickleback Species

    Article • PLoS Genetics, March 2014, PLOS

    Shuji Shigenobu

  7. Comparison of gene expression of Paramecium bursaria with and without Chlorella variabilissymbionts

    Article • BMC Genomics, March 2014, Springer Science + Business Media

    Shuji Shigenobu

  8. Identical sets of methylated and nonmethylated genes in Ciona intestinalis sperm and muscle cells

    Article • Epigenetics & Chromatin, November 2013, Springer Science + Business Media

    Shuji Shigenobu

  9. Correction: Construction and Characterization of Normalized cDNA Libraries by 454 Pyrosequencing and Estimation of DNA Methylation Levels in Three Distantly Related Termite Species

    Article • PLOS One, October 2013, PLOS

    Shuji Shigenobu

  10. Construction and Characterization of Normalized cDNA Libraries by 454 Pyrosequencing and Estimation of DNA Methylation Levels in Three Distantly Related Termite Species

    Article • PLOS One, September 2013, PLOS

    Shuji Shigenobu

  11. Complete Genome Sequence of Burkholderia sp. Strain RPE64, Bacterial Symbiont of the Bean Bug Riptortus pedestris

    Article • Genome Announcements, July 2013, ASM Journals

    Shuji Shigenobu

  12. The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan

    Article • Nature Genetics, April 2013, Springer Science + Business Media

    Shuji Shigenobu

  13. Identification of an EMS-induced causal mutation in a gene required for boron-mediated root development by low-coverage genome re-sequencing inArabidopsis

    Article • Plant Signaling & Behavior, January 2013, Taylor & Francis

    Shuji Shigenobu

  14. Aphids evolved novel secreted proteins for symbiosis with bacterial endosymbiont

    Article • Proceedings of the Royal Society B Biological Sciences, November 2012, Royal Society Publishing

    Shuji Shigenobu

  15. Sexual and asexual oogenesis require the expression of unique and shared sets of genes in the insect Acyrthosiphon pisum

    Article • BMC Genomics, February 2012, Springer Science + Business Media

    Shuji Shigenobu

  16. Genomic revelations of a mutualism: the pea aphid and its obligate bacterial symbiont

    Article • Cellular and Molecular Life Sciences, March 2011, Springer Science + Business Media

    Shuji Shigenobu

  17. Transcription factor AP2‐Sp and its target genes in malarial sporozoites

    Article • Molecular Microbiology, February 2010, Wiley

    Shuji Shigenobu

  18. Expression of the apoptosis inducer genehead involution defectivein primordial germ cells of theDrosophilaembryo requireseiger,p53, andlokifunction

    Article • Development Growth & Differentiation, April 2009, Wiley

    Shuji Shigenobu

  19. Identification of a transcription factor in the mosquito‐invasive stage of malaria parasites

    Article • Molecular Microbiology, March 2009, Wiley

    Shuji Shigenobu

  20. Expression of genes involved in sumoylation in the Drosophila germline

    Article • Gene Expression Patterns, January 2009, Elsevier

    Shuji Shigenobu

  21. MAMO, a maternal BTB/POZ-Zn-finger protein enriched in germline progenitors is required for the production of functional eggs in Drosophila

    Article • Mechanisms of Development, August 2007, Elsevier

    Shuji Shigenobu

  22. Boss/Sev Signaling from Germline to Soma Restricts Germline-Stem-Cell-Niche Formation in the Anterior Region of Drosophila Male Gonads

    Article • Developmental Cell, July 2007, Elsevier

    Shuji Shigenobu

  23. Expression of meiotic genes in the germline progenitors of Drosophila embryos

    Article • Gene Expression Patterns, March 2006, Elsevier

    Shuji Shigenobu

  24. Isolation of germline cells from Drosophila embryos by flow cytometry

    Article • Development Growth & Differentiation, January 2006, Wiley

    Shuji Shigenobu

  25. An Experimental Validation of Orphan Genes of Buchnera, a Symbiont of Aphids

    Article • Biochemical and Biophysical Research Communications, March 2002, Elsevier

    Shuji Shigenobu

  26. Accumulation of Species-Specific Amino Acid Replacements That Cause Loss of Particular Protein Functions in Buchnera, an Endocellular Bacterial Symbiont

    Article • Journal of Molecular Evolution, October 2001, Springer Science + Business Media

    Shuji Shigenobu