All Stories

  1. Assembly of the Complete Sitka Spruce Chloroplast Genome Using 10X Genomics’ GemCode Sequencing Data
  2. Organellar Genomes of White Spruce ( Picea glauca ): Assembly and Annotation
  3. Sealer: a scalable gap-closing application for finishing draft genomes
  4. Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism
  5. UniqTag: Content-Derived Unique and Stable Identifiers for Gene Annotation
  6. On the Representation of De Bruijn Graphs
  7. DIDA: Distributed Indexing Dispatched Alignment
  8. Spaced Seed Data Structures forDe NovoAssembly
  9. Konnector v2.0: pseudo-long reads from paired-end sequencing data
  10. Spaced seed data structures
  11. Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph
  12. KLEAT: CLEAVAGE SITE ANALYSIS OF TRANSCRIPTOMES
  13. BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters
  14. UniqTag: Content-derived unique and stable identifiers for gene annotation
  15. On the Representation of de Bruijn Graphs
  16. Whole Genome Duplication and Enrichment of Metal Cation Transporters Revealed by De Novo Genome Sequencing of Extremely Halotolerant Black Yeast Hortaea werneckii
  17. Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies
  18. The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera
  19. Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data
  20. The genetic landscape of high-risk neuroblastoma
  21. Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest
  22. Subgroup-specific structural variation across 1,000 medulloblastoma genomes
  23. Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers
  24. Genome Sequence of Mycoplasma capricolum subsp. capripneumoniae Strain M1601
  25. Assemblathon 1: A competitive assessment of de novo short read assembly methods
  26. Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees
  27. Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma
  28. De novo assembly and analysis of RNA-seq data
  29. Assembling genomes using short-read sequencing technology
  30. ABySS-Explorer: Visualizing Genome Sequence Assemblies
  31. De novo transcriptome assembly with ABySS
  32. ABySS: A parallel assembler for short read sequence data