All Stories

  1. Temporal Patterns of Deleterious Variations: Purifying Selection Across Evolutionary Timescales

    Article • August 2026, MDPI AG

    Dr Sankar Subramanian

  2. The amino acid composition of mammalian mitochondrial proteins correlates with generation time

    Article • Frontiers in Ecology and Evolution, March 2026, Frontiers

    Dr Sankar Subramanian

  3. Genetic structure of Sydney Cockle Anadara trapezia: Implications for stock assessment and restoration of extirpated populations

    Article • Fisheries Research, March 2026, Elsevier

    Dr Sankar Subramanian

  4. Deleterious Mutations in the Mitogenomes of Cetacean Populations

    Article • Biology, January 2026, MDPI AG

    Dr Sankar Subramanian

  5. Transcription Factor Analysis of Rhodophytes Suggests Trihelix Transcription Factors Across the Florideophyceae

    Article • Plants, October 2025, MDPI AG

    Dr Sankar Subramanian

  6. The Abundance of Harmful Rare Homozygous Variants in Children of Consanguineous Parents

    Article • Biology, March 2025, MDPI AG

    Dr Sankar Subramanian

  7. Purifying Selection Influences the Comparison of Heterozygosities between Populations

    Article • Biology, October 2024, MDPI AG

    Dr Sankar Subramanian

  8. The Association between the Abundance of Homozygous Deleterious Variants and the Morbidity of Dog Breeds

    Article • Biology, July 2024, MDPI AG

    Dr Sankar Subramanian

  9. Genomic Consequences of Isolation and Inbreeding in an Island Dingo Population

    Article • Genome Biology and Evolution, June 2024, Oxford University Press (OUP)

    Dr Sankar Subramanian

  10. The genetics and breeding of the Portuguese oyster, Crassostrea angulata: lessons, experiences, and challenges in Vietnam

    Article • Frontiers in Marine Science, November 2023, Frontiers

    Dr Sankar Subramanian

  11. Genomic consequences of isolation and inbreeding in an island dingo population

    Article • September 2023, Cold Spring Harbor Laboratory Press

    Dr Sankar Subramanian

  12. Genomic analyses indicate two blue swimmer crab species in Australia, evidence for natural interspecific hybridization and genetic structure within species with implications for fisheries management and stock enhancement

    Article • Fisheries Research, September 2023, Elsevier

    Dr Sankar Subramanian

  13. Genomic signatures of bottleneck and founder effects in dingoes

    Article • Ecology and Evolution, September 2023, Wiley

    Dr Sankar Subramanian

  14. The abundance of harmful homozygous rare variants in children of consanguineous parents

    Article • July 2023, Springer Science + Business Media

    Dr Sankar Subramanian

  15. Genomic footprints of bottleneck in landlocked salmon population

    Article • Scientific Reports, April 2023, Springer Science + Business Media

    Dr Sankar Subramanian

  16. Deleterious mutation load in the admixed mice population

    Article • Frontiers in Ecology and Evolution, March 2023, Frontiers

    Dr Sankar Subramanian

  17. Genomic signatures of bottleneck and founder effects in dingoes

    Article • February 2023, Cold Spring Harbor Laboratory Press

    Dr Sankar Subramanian

  18. The Difference in the Proportions of Deleterious Variations within and between Populations Influences the Estimation of FST

    Article • Genes, January 2022, MDPI AG

    Dr Sankar Subramanian

  19. Deleterious protein-coding variants in diverse cattle breeds of the world

    Article • Genetics Selection Evolution, October 2021, Springer Science + Business Media

    Dr Sankar Subramanian

  20. Genomic Prediction for Whole Weight, Body Shape, Meat Yield, and Color Traits in the Portuguese Oyster Crassostrea angulata

    Article • Frontiers in Genetics, July 2021, Frontiers

    Dr Mohammad Mobashwer Alam, Dr Sankar Subramanian

  21. NMOSD and MS prevalence in the Indigenous populations of Australia and New Zealand

    Article • Journal of Neurology, July 2021, Springer Science + Business Media

    Dr Sankar Subramanian

  22. Harmful mutation load in the mitochondrial genomes of cattle breeds

    Article • BMC Research Notes, June 2021, Springer Science + Business Media

    Dr Sankar Subramanian

  23. Harmful Mutation Load in the Mitochondrial Genomes of Cattle Breeds 

    Article • March 2021, Research Square

    Dr Sankar Subramanian

  24. Difference in the Proportions of Deleterious Variations Within and Between Populations Influences the Estimation of FST

    Article • February 2021, Research Square

    Dr Sankar Subramanian

  25. The Long-Term Evolutionary History of Gradual Reduction of CpG Dinucleotides in the SARS-CoV-2 Lineage

    Article • Biology, January 2021, MDPI AG

    Dr Sankar Subramanian

  26. PACTRIMS 2019

    Article • Multiple Sclerosis Journal, June 2020, SAGE Publications

    Dr Sankar Subramanian

  27. VCF2PopTree: a client-side software to construct population phylogeny from genome-wide SNPs

    Article • PeerJ, December 2019, PeerJ

    Dr Sankar Subramanian

  28. Population size influences the type of nucleotide variations in humans

    Article • BMC Genetics, December 2019, Springer Science + Business Media

    Dr Sankar Subramanian

  29. Mitogenomic diversity in Sacred Ibis Mummies sheds light on early Egyptian practices

    Article • PLOS One, November 2019, PLOS

    Dr Sankar Subramanian

  30. Greenlip Abalone (Haliotis laevigata) Genome and Protein Analysis Provides Insights into Maturation and Spawning

    Article • G3 Genes Genomes Genetics, October 2019, Oxford University Press (OUP)

    Dr Sankar Subramanian

  31. VCF2PopTree: a one-click client-side software to construct population phylogeny from genome-wide SNPs

    Article • April 2019, PeerJ

    Dr Sankar Subramanian

  32. Ancient nuclear genomes enable repatriation of Indigenous human remains

    Article • Science Advances, December 2018, American Association for the Advancement of Science

    Dr Sankar Subramanian

  33. ‘Fishing’ for Mitochondrial DNA in The Egyptian Sacred Ibis Mummies

    Article • November 2018, Cold Spring Harbor Laboratory Press

    Dr Sankar Subramanian

  34. The genome of the oyster Saccostrea offers insight into the environmental resilience of bivalves

    Article • DNA Research, October 2018, Oxford University Press (OUP)

    Dr Sankar Subramanian

  35. Effect of genetic drift on determinants of protein evolution

    Article • Biology Letters, July 2018, Royal Society Publishing

    Dr Sankar Subramanian

  36. Abundance of clinical variants in exons included in multiple transcripts

    Article • Human Genomics, June 2018, Springer Science + Business Media

    Dr Sankar Subramanian

  37. Influence of Effective Population Size on Genes under Varying Levels of Selection Pressure

    Article • Genome Biology and Evolution, February 2018, Oxford University Press (OUP)

    Dr Sankar Subramanian

  38. Ancient Population Genomics

    Article • February 2018, Wiley

    Dr Sankar Subramanian

  39. A genomic history of Aboriginal Australia

    Article • Nature, September 2016, Springer Science + Business Media

    Dr Sankar Subramanian

  40. Ancient mtDNA sequences from the First Australians revisited

    Article • Proceedings of the National Academy of Sciences, June 2016, Proceedings of the National Academy of Sciences

    Dr Sankar Subramanian

  41. The effects of sample size on population genomic analyses – implications for the tests of neutrality

    Article • BMC Genomics, February 2016, Springer Science + Business Media

    Dr Sankar Subramanian

  42. Europeans have a higher proportion of high-frequency deleterious variants than Africans

    Article • Human Genetics, October 2015, Springer Science + Business Media

    Dr Sankar Subramanian

  43. Distance-dependent patterns of molecular divergences in tuatara mitogenomes

    Article • Scientific Reports, March 2015, Springer Science + Business Media

    Dr Sankar Subramanian

  44. Whole-genome analyses resolve early branches in the tree of life of modern birds

    Article • Science, December 2014, American Association for the Advancement of Science

    Cai Li, Edward L Braun, Dr Sankar Subramanian

  45. Ancient population genomics and the study of evolution

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, December 2014, Royal Society Publishing

    Dr Sankar Subramanian

  46. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

    Article • GigaScience, December 2014, Oxford University Press (OUP)

    Cai Li, Dr Sankar Subramanian

  47. Using the plurality of codon positions to identify deleterious variants in human exomes

    Article • Bioinformatics, October 2014, Oxford University Press (OUP)

    Dr Sankar Subramanian

  48. Evidence for a recent origin of penguins

    Article • Proceedings of the Royal Society B Biological Sciences, November 2013, Royal Society Publishing

    Sankar Subramanian, Dr Sankar Subramanian

  49. Complete mitochondrial genomes of Tuatara endemic to different islands of New Zealand

    Article • Mitochondrial DNA, October 2013, Taylor & Francis

    Dr Sankar Subramanian

  50. Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau

    Article • Nature Communications, July 2013, Springer Science + Business Media

    Sankar Subramanian, Dr Sankar Subramanian

  51. Second generation DNA sequencing of the mitogenome of the Chinstrap penguin and comparative genomics of Antarctic penguins

    Article • Mitochondrial DNA, June 2013, Taylor & Francis

    Sankar Subramanian, Dr Sankar Subramanian

  52. Selection against Amino Acid Replacements in Human Proteins

    Article • March 2013, Wiley

    Sankar Subramanian, Dr Sankar Subramanian

  53. Significance of Population Size on the Fixation of Nonsynonymous Mutations in Genes Under Varying Levels of Selection Pressure

    Article • Genetics, March 2013, Oxford University Press (OUP)

    Dr Sankar Subramanian

  54. Adélie penguins and temperature changes in Antarctica: a long‐term view

    Article • Integrative Zoology, June 2012, Wiley

    Sankar Subramanian, Dr Sankar Subramanian

  55. Quantifying harmful mutations in human populations

    Article • European Journal of Human Genetics, April 2012, Springer Science + Business Media

    Sankar Subramanian, Dr Sankar Subramanian

  56. The Abundance of Deleterious Polymorphisms in Humans

    Article • Genetics, April 2012, Oxford University Press (OUP)

    Dr Sankar Subramanian

  57. Selective Constraints Determine the Time Dependency of Molecular Rates for Human Nuclear Genomes

    Article • Genome Biology and Evolution, January 2012, Oxford University Press (OUP)

    Dr Sankar Subramanian

  58. Fixation of Deleterious Mutations at Critical Positions in Human Proteins

    Article • Molecular Biology and Evolution, April 2011, Oxford University Press (OUP)

    Dr Sankar Subramanian

  59. Time Dependency of Molecular Evolutionary Rates? Yes and No

    Article • Genome Biology and Evolution, January 2011, Oxford University Press (OUP)

    Dr Sankar Subramanian

  60. Next generation sequencing and analysis of a conserved transcriptome of New Zealand's kiwi

    Article • BMC Evolutionary Biology, December 2010, Springer Science + Business Media

    Sankar Subramanian, Dr Sankar Subramanian

  61. High Proportions of Deleterious Polymorphisms in Constrained Human Genes

    Article • Molecular Biology and Evolution, October 2010, Oxford University Press (OUP)

    Dr Sankar Subramanian

  62. High mitogenomic evolutionary rates and time dependency

    Article • Trends in Genetics, November 2009, Elsevier

    Sankar Subramanian, Dr Sankar Subramanian

  63. Temporal Trails of Natural Selection in Human Mitogenomes

    Article • Molecular Biology and Evolution, January 2009, Oxford University Press (OUP)

    Dr Sankar Subramanian

  64. Molecular and morphological evolution in tuatara are decoupled

    Article • Trends in Genetics, January 2009, Elsevier

    Sankar Subramanian, Dr Sankar Subramanian

  65. New developments in ancient genomics

    Article • Trends in Ecology & Evolution, July 2008, Elsevier

    Sankar Subramanian, Dr Sankar Subramanian

  66. Nearly Neutrality and the Evolution of Codon Usage Bias in Eukaryotic Genomes

    Article • Genetics, April 2008, Oxford University Press (OUP)

    Dr Sankar Subramanian

  67. Selection against Amino Acid Replacements in Human Proteins

    Article • March 2008, Wiley

    Dr Sankar Subramanian

  68. Rapid molecular evolution in a living fossil

    Article • Trends in Genetics, March 2008, Elsevier

    Sankar Subramanian, Dr Sankar Subramanian

  69. Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome

    Article • BMC Genomics, December 2006, Springer Science + Business Media

    Dr Sankar Subramanian

  70. Higher Intensity of Purifying Selection on >90% of the Human Genes Revealed by the Intrinsic Replacement Mutation Rates

    Article • Molecular Biology and Evolution, August 2006, Oxford University Press (OUP)

    Dr Sankar Subramanian

  71. Signatures of Ecological Resource Availability in the Animal and Plant Proteomes

    Article • Molecular Biology and Evolution, July 2006, Oxford University Press (OUP)

    Dr Sankar Subramanian

  72. Gene Expression Intensity Shapes Evolutionary Rates of the Proteins Encoded by the Vertebrate Genome

    Article • Genetics, September 2004, Oxford University Press (OUP)

    Dr Sankar Subramanian

  73. Genomic sequence of a ranavirus (family Iridoviridae) associated with salamander mortalities in North America

    Article • Virology, November 2003, Elsevier

    Sankar Subramanian, Dr Sankar Subramanian

  74. Temporal Patterns of Fruit Fly (Drosophila) Evolution Revealed by Mutation Clocks

    Article • Molecular Biology and Evolution, October 2003, Oxford University Press (OUP)

    Dr Sankar Subramanian

  75. Neutral Substitutions Occur at a Faster Rate in Exons Than in Noncoding DNA in Primate Genomes

    Article • Genome Research, May 2003, Cold Spring Harbor Laboratory Press

    Dr Sankar Subramanian

  76. Patterns of Transitional Mutation Biases Within and Among Mammalian Genomes

    Article • Molecular Biology and Evolution, April 2003, Oxford University Press (OUP)

    Dr Michael S Rosenberg, Dr Sankar Subramanian

  77. The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

    Article • BMC Bioinformatics, January 2002, Springer Science + Business Media

    Dr Sankar Subramanian

  78. Mutation rates in mammalian genomes

    Article • Proceedings of the National Academy of Sciences, January 2002, Proceedings of the National Academy of Sciences

    Dr Sankar Subramanian

  79. Development of genetic markers in cyanobacteria and stability of genetically marked strains in soil

    Article • World Journal of Microbiology and Biotechnology, July 2001, Springer Science + Business Media

    Dr Sankar Subramanian