All Stories

  1. Phylogenomics using Compression Distances: Incorporating Rate Heterogeneity and Amino Acid Properties

    Article • September 2023, ACM (Association for Computing Machinery)

    Edward L Braun

  2. The Structure of Evolutionary Model Space for Proteins across the Tree of Life

    Article • Biology, February 2023, MDPI AG

    Edward L Braun

  3. The Structure of Evolutionary Model Space for Proteins Across the Tree of Life

    Article • December 2022, MDPI AG

    Edward L Braun

  4. High association strengths are linked to phenotypic similarity, including plumage color and patterns, of participants in mixed-species bird flocks of southwestern China

    Article • Current Zoology, December 2022, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  5. Molecular early burst associated with the diversification of birds at the K–Pg boundary

    Article • October 2022, Cold Spring Harbor Laboratory Press

    Dr Rebecca T Kimball, Edward L Braun

  6. Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae)

    Article • Molecular Phylogenetics and Evolution, October 2022, Elsevier

    Edward L Braun

  7. Exploring Conflicts in Whole Genome Phylogenetics: A Case Study within Manakins (Aves: Pipridae)

    Article • Systematic Biology, September 2022, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  8. Categorical edge-based analyses of phylogenomic data reveal conflicting signals for difficult relationships in the avian tree

    Article • Molecular Phylogenetics and Evolution, September 2022, Elsevier

    Edward L Braun

  9. Updating splits, lumps, and shuffles: Reconciling GenBank names with standardized avian taxonomies

    Article • Ornithology, August 2022, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  10. Phylogenetic definitions for 25 higher-level clade names of birds

    Article • Avian Research, April 2022, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  11. Dynamic Patterns of Sex Chromosome Evolution in Neognath Birds: Many Independent Barriers to Recombination at the ATP5F1A Locus

    Article • Birds, January 2022, MDPI AG

    Dr Rebecca T Kimball, Edward L Braun

  12. Dynamic Patterns of Sex Chromosome Evolution in Neognath Birds: Many Independent Barriers to Recombination at the ATP5F1A Locus

    Article • December 2021, MDPI AG

    Dr Rebecca T Kimball, Edward L Braun

  13. Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements

    Article • BMC Ecology and Evolution, November 2021, Springer Science + Business Media

    Edward L Braun

  14. Historical specimens and the limits of subspecies phylogenomics in the New World quails (Odontophoridae)

    Article • November 2021, Cold Spring Harbor Laboratory Press

    Dr Rebecca T Kimball, Edward L Braun

  15. Protein Structure, Models of Sequence Evolution, and Data Type Effects in Phylogenetic Analyses of Mitochondrial Data: A Case Study in Birds

    Article • Diversity, November 2021, MDPI AG

    Dr Rebecca T Kimball, Edward L Braun

  16. A novel exome probe set captures phototransduction genes across birds (Aves) enabling efficient analysis of vision evolution

    Article • Molecular Ecology Resources, October 2021, Wiley

    Dr Rebecca T Kimball, Edward L Braun

  17. Protein Structure, Models of Sequence Evolution, and Data Type Effects in Phylogenetic Analyses of Mitochondrial Data: A Case Study in Birds

    Article • September 2021, MDPI AG

    Dr Rebecca T Kimball, Edward L Braun

  18. Gene tree quality affects empirical coalescent branch length estimation

    Article • Zoologica Scripta, September 2021, Wiley

    Edward L Braun

  19. TAPER: Pinpointing errors in multiple sequence alignments despite varying rates of evolution

    Article • Methods in Ecology and Evolution, August 2021, Wiley

    Edward L Braun

  20. When good mitochondria go bad: Cyto-nuclear discordance in landfowl (Aves: Galliformes)

    Article • Gene, July 2021, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  21. A phylogenomic supermatrix of Galliformes (Landfowl) reveals biased branch lengths

    Article • Molecular Phylogenetics and Evolution, May 2021, Elsevier

    Edward L Braun

  22. Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

    Article • April 2021, Springer Science + Business Media

    Edward L Braun

  23. Author Correction: Dense sampling of bird diversity increases power of comparative genomics

    Article • Nature, April 2021, Springer Science + Business Media

    Edward L Braun

  24. The Roles of Protein Structure, Taxon Sampling, and Model Complexity in Phylogenomics: A Case Study Focused on Early Animal Divergences

    Article • Biophysica, March 2021, MDPI AG

    Edward L Braun

  25. Phylogenomics of manakins (Aves: Pipridae) using alternative locus filtering strategies based on informativeness

    Article • Molecular Phylogenetics and Evolution, February 2021, Elsevier

    Edward L Braun

  26. The Roles of Protein Structure, Taxon Sampling, and Model Complexity in Phylogenomics: A Case Study Focused on Early Animal Divergences

    Article • January 2021, MDPI AG

    Edward L Braun

  27. Data Types and the Phylogeny of Neoaves

    Article • Birds, January 2021, MDPI AG

    Dr Rebecca T Kimball, Edward L Braun

  28. TAPER: Pinpointing errors in multiple sequence alignments despite varying rates of evolution

    Article • December 2020, Cold Spring Harbor Laboratory Press

    Edward L Braun

  29. Data Types and the Phylogeny of Neoaves

    Article • November 2020, MDPI AG

    Dr Rebecca T Kimball, Edward L Braun

  30. Dense sampling of bird diversity increases power of comparative genomics

    Article • Nature, November 2020, Springer Science + Business Media

    Edward L Braun

  31. Patterns of protein sequence evolution differ among organisms across the tree of life

    Article • September 2020, ACM (Association for Computing Machinery)

    Edward L Braun

  32. Phylogeny and diversification of the gallopheasants (Aves: Galliformes): Testing roles of sexual selection and environmental niche divergence

    Article • Zoologica Scripta, August 2020, Wiley

    Dr Rebecca T Kimball, Edward L Braun

  33. Tempo and Pattern of Avian Brain Size Evolution

    Article • Current Biology, June 2020, Elsevier

    Edward L Braun

  34. Deep-Time Demographic Inference Suggests Ecological Release as Driver of Neoavian Adaptive Radiation

    Article • Diversity, April 2020, MDPI AG

    Edward L Braun

  35. Mitochondrial genome of Apis mellifera anatoliaca (Hymenoptera: Apidae) – the Anatolian honey bee

    Article • Mitochondrial DNA Part B, April 2020, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  36. Phylogenetic Analyses of Sites in Different Protein Structural Environments Result in Distinct Placements of the Metazoan Root

    Article • Biology, March 2020, MDPI AG

    Edward L Braun

  37. Whole genome phylogeny of Gallus: introgression and data-type effects

    Article • Avian Research, March 2020, Elsevier

    Edward L Braun

  38. Protein evolution is structure dependent and non-homogeneous across the tree of life

    Article • January 2020, Cold Spring Harbor Laboratory Press

    Edward L Braun

  39. The complete mitochondrial genome of Apis mellifera jemenitica (Insecta: Hymenoptera: Apidae), the Arabian honey bee

    Article • Mitochondrial DNA Part B, January 2020, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  40. The mitochondrial genome of the Maltese honey bee, Apis mellifera ruttneri (Insecta: Hymenoptera: Apidae)

    Article • Mitochondrial DNA Part B, January 2020, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  41. The mitochondrial genome of Apis mellifera simensis (Hymenoptera: Apidae), an Ethiopian honey bee

    Article • Mitochondrial DNA Part B, December 2019, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  42. The complete mitochondrial genome of the West African honey bee Apis mellifera adansonii (Insecta: Hymenoptera: Apidae)

    Article • Mitochondrial DNA Part B, December 2019, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  43. The mitochondrial genome of the Spanish honey bee, Apis mellifera iberiensis (Insecta: Hymenoptera: Apidae), from Portugal

    Article • Mitochondrial DNA Part B, December 2019, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  44. Phylogenetic Analyses of Sites in Different Protein Structural Environments Result in Distinct Placements of the Metazoan Root

    Article • October 2019, MDPI AG

    Edward L Braun

  45. A Phylogenomic Supertree of Birds

    Article • Diversity, July 2019, MDPI AG

    Dr Rebecca T Kimball, Edward L Braun

  46. Phylogenetic Signal of Indels and the Neoavian Radiation

    Article • Diversity, July 2019, MDPI AG

    Edward L Braun

  47. The complete mitochondrial genome of Apis mellifera unicolor (Insecta: Hymenoptera: Apidae), the Malagasy honey bee

    Article • Mitochondrial DNA Part B, July 2019, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  48. The mitochondrial genome of the Carniolan honey bee, Apis mellifera carnica (Insecta: Hymenoptera: Apidae)

    Article • Mitochondrial DNA Part B, July 2019, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  49. Earth history and the passerine superradiation

    Article • Proceedings of the National Academy of Sciences, April 2019, Proceedings of the National Academy of Sciences

    Edward L Braun

  50. What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data?

    Article • Molecular Phylogenetics and Evolution, January 2019, Elsevier

    Edward L Braun

  51. A simple strategy for recovering ultraconserved elements, exons, and introns from low coverage shotgun sequencing of museum specimens: placement of the partridge genus Tropicoperdix within the Galliformes

    Article • Molecular Phylogenetics and Evolution, September 2018, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  52. Why do phylogenomic analyses of early animal evolution continue to disagree? Sites in different structural environments yield different answers

    Article • August 2018, Cold Spring Harbor Laboratory Press

    Edward L Braun

  53. An evolutionary model motivated by physicochemical properties of amino acids reveals variation among proteins

    Article • Bioinformatics, June 2018, Oxford University Press (OUP)

    Edward L Braun

  54. Comparative Genomics Reveals a Burst of Homoplasy-Free Numt Insertions

    Article • Molecular Biology and Evolution, May 2018, Oxford University Press (OUP)

    Edward L Braun

  55. Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution

    Article • BMC Genomics, May 2018, Springer Science + Business Media

    Dr Rebecca T Kimball, Edward L Braun

  56. Mitochondrial genome diversity and population structure of two western honey bee subspecies in the Republic of South Africa

    Article • Scientific Reports, January 2018, Springer Science + Business Media

    Dr Rebecca T Kimball, Edward L Braun

  57. Phylogenomic analysis supports multiple instances of polyphyly in the oomycete peronosporalean lineage

    Article • Molecular Phylogenetics and Evolution, September 2017, Elsevier

    Edward L Braun

  58. How do seemingly non-vagile clades accomplish trans-marine dispersal? Trait and dispersal evolution in the landfowl (Aves: Galliformes)

    Article • Proceedings of the Royal Society B Biological Sciences, May 2017, Royal Society Publishing

    Dr Rebecca T Kimball, Edward L Braun

  59. Historical relationships of three enigmatic phasianid genera (Aves: Galliformes) inferred using phylogenomic and mitogenomic data

    Article • Molecular Phylogenetics and Evolution, April 2017, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  60. Evolution of the 3R-MYB Gene Family in Plants

    Article • Genome Biology and Evolution, April 2017, Oxford University Press (OUP)

    Edward L Braun

  61. Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling

    Article • Systematic Biology, March 2017, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  62. The complete mitochondrial genome of Apis nuluensis Tingek, an Asian honey bee (Insecta: Hymenoptera: Apidae)

    Article • Mitochondrial DNA Part B, January 2017, Taylor & Francis

    Edward L Braun

  63. The complete mitochondrial genome of an east African honey bee, Apis mellifera monticola Smith (Insecta: Hymenoptera: Apidae)

    Article • Mitochondrial DNA Part B, January 2017, Taylor & Francis

    Edward L Braun

  64. The complete mitochondrial genome and phylogenetic placement of Apis nigrocincta Smith (Insecta: Hymenoptera: Apidae), an Asian, cavity-nesting honey bee

    Article • Mitochondrial DNA Part B, January 2017, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  65. The complete mitochondrial genome of Apis mellifera meda (Insecta: Hymenoptera: Apidae)

    Article • Mitochondrial DNA Part B, January 2017, Taylor & Francis

    Edward L Braun

  66. The complete mitochondrial genome of the Egyptian honey bee, Apis mellifera lamarckii (Insecta: Hymenoptera: Apidae)

    Article • Mitochondrial DNA Part B, January 2017, Taylor & Francis

    Dr Nizar Jamal Haddad, Edward L Braun

  67. Rapid and recent diversification of curassows, guans, and chachalacas (Galliformes: Cracidae) out of Mesoamerica: Phylogeny inferred from mitochondrial, intron, and ultraconserved element sequences

    Article • Molecular Phylogenetics and Evolution, September 2016, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  68. Ancestral range reconstruction of Galliformes: the effects of topology and taxon sampling

    Article • Journal of Biogeography, July 2016, Wiley

    Dr Rebecca T Kimball, Zhengwang Zhang, Edward L Braun

  69. Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication

    Article • Current Biology, June 2016, Elsevier

    Edward L Braun

  70. Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences

    Article • Molecular Phylogenetics and Evolution, May 2016, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  71. Whole genome sequence of the emerging oomycete pathogen Pythium insidiosum strain CDC-B5653 isolated from an infected human in the USA

    Article • Genomics Data, March 2016, Elsevier

    Edward L Braun

  72. Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods

    Article • Systematic Biology, February 2016, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  73. The complete mitochondrial genome of the hybrid honey bee, Apis mellifera capensis × Apis mellifera scutellata, from South Africa

    Article • Mitochondrial DNA Part B, January 2016, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  74. The complete mitochondrial genome of the Cape honey bee, Apis mellifera capensis Esch. (Insecta: hymenoptera: apidae)

    Article • Mitochondrial DNA Part B, January 2016, Taylor & Francis

    Dr Rebecca T Kimball, Edward L Braun

  75. Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes)

    Article • Molecular Biology and Evolution, December 2015, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  76. Response to Comment on “Whole-genome analyses resolve early branches in the tree of life of modern birds”

    Article • Science, September 2015, American Association for the Advancement of Science

    Edward L Braun

  77. Land connectivity changes and global cooling shaped the colonization history and diversification of New World quail (Aves: Galliformes: Odontophoridae)

    Article • Journal of Biogeography, June 2015, Wiley

    Dr Rebecca T Kimball, Edward L Braun

  78. Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity

    Article • eLife, April 2015, eLife

    Dr Welkin H Pope, Professor Shallee T Page, Edward L Braun

  79. Building the avian tree of life using a large-scale, sparse supermatrix

    Article • Molecular Phylogenetics and Evolution, March 2015, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  80. Phylogenomic analyses data of the avian phylogenomics project

    Article • GigaScience, February 2015, Oxford University Press (OUP)

    Cai Li, Edward L Braun

  81. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

    Article • Science, December 2014, American Association for the Advancement of Science

    Edward L Braun

  82. Comparative genomics reveals insights into avian genome evolution and adaptation

    Article • Science, December 2014, American Association for the Advancement of Science

    Cai Li, Edward L Braun, Dr Jacqueline Smith

  83. Whole-genome analyses resolve early branches in the tree of life of modern birds

    Article • Science, December 2014, American Association for the Advancement of Science

    Cai Li, Edward L Braun, Dr Sankar Subramanian

  84. Early Mesozoic Coexistence of Amniotes and Hepadnaviridae

    Article • PLoS Genetics, December 2014, PLOS

    Edward L Braun

  85. Multiple Lineages of Ancient CR1 Retroposons Shaped the Early Genome Evolution of Amniotes

    Article • Genome Biology and Evolution, December 2014, Oxford University Press (OUP)

    Edward L Braun

  86. The evolution of peafowl and other taxa with ocelli (eyespots): a phylogenomic approach

    Article • Proceedings of the Royal Society B Biological Sciences, September 2014, Royal Society Publishing

    Dr Rebecca T Kimball, Edward L Braun

  87. Incongruence among different mitochondrial regions: A case study using complete mitogenomes

    Article • Molecular Phylogenetics and Evolution, September 2014, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  88. Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix

    Article • PeerJ, April 2014, PeerJ

    Dr Rebecca T Kimball, Edward L Braun

  89. Identifying localized biases in large datasets: A case study using the avian tree of life

    Article • Molecular Phylogenetics and Evolution, December 2013, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  90. Assessing Phylogenetic Relationships among Galliformes: A Multigene Phylogeny with Expanded Taxon Sampling in Phasianidae

    Article • PLoS ONE, May 2013, PLOS

    Dr Rebecca T Kimball, Edward L Braun

  91. Parsimony and Model-Based Analyses of Indels in Avian Nuclear Genes Reveal Congruent and Incongruent Phylogenetic Signals

    Article • Biology, March 2013, MDPI AG

    Dr Rebecca T Kimball, Edward L Braun

  92. Error in Phylogenetic Estimation for Bushes in the Tree of Life

    Article • Journal of Phylogenetics & Evolutionary Biology, January 2013, OMICS Publishing Group

    Edward L Braun

  93. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage

    Article • Genome Biology, January 2013, Springer Science + Business Media

    Edward L Braun

  94. Report from the First Snake Genomics and Integrative Biology Meeting

    Article • Standards in Genomic Sciences, September 2012, Springer Science + Business Media

    Edward L Braun

  95. Ratite Nonmonophyly: Independent Evidence from 40 Novel Loci

    Article • Systematic Biology, July 2012, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  96. Assessing Parameter Identifiability in Phylogenetic Models Using Data Cloning

    Article • Systematic Biology, July 2012, Oxford University Press (OUP)

    Edward L Braun

  97. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes

    Article • January 2012, Springer Science + Business Media

    Dr Arkhat Abzhanov, Edward L Braun

  98. An unbiased approach to identify genes involved in development in a turtle with temperature-dependent sex determination

    Article • BMC Genomics, January 2012, Springer Science + Business Media

    Edward L Braun

  99. Testing Hypotheses about the Sister Group of the Passeriformes Using an Independent 30-Locus Data Set

    Article • Molecular Biology and Evolution, September 2011, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  100. Evolutionary Genomics Implies a Specific Function of Ant4 in Mammalian and Anole Lizard Male Germ Cells

    Article • PLoS ONE, August 2011, PLOS

    Edward L Braun

  101. Homoplastic microinversions and the avian tree of life

    Article • BMC Evolutionary Biology, May 2011, Springer Science + Business Media

    Dr Rebecca T Kimball, Edward L Braun

  102. A Macroevolutionary Perspective on Multiple Sexual Traits in the Phasianidae (Galliformes)

    Article • International Journal of Evolutionary Biology, May 2011, Hindawi Publishing Corporation

    Dr Rebecca T Kimball, Edward L Braun

  103. Evolutionary and comparative analysis of MYB and bHLH plant transcription factors

    Article • The Plant Journal, March 2011, Wiley

    Edward L Braun

  104. Are Transposable Element Insertions Homoplasy Free?: An Examination Using the Avian Tree of Life

    Article • Systematic Biology, February 2011, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  105. Comparative molecular evolution and phylogenetic utility of 3′-UTRs and introns in Galliformes

    Article • Molecular Phylogenetics and Evolution, August 2010, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  106. Phylogenomic Analyses Reveal the Evolutionary Origin of the Inhibin α-Subunit, a Unique TGFβ Superfamily Antagonist

    Article • PLoS ONE, March 2010, PLOS

    Edward L Braun

  107. A well-tested set of primers to amplify regions spread across the avian genome

    Article • Molecular Phylogenetics and Evolution, March 2009, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  108. From Reptilian Phylogenomics to Reptilian Genomes: Analyses of c-<i>Jun</i> and <i>DJ-1</i> Proto-Oncogenes

    Article • Cytogenetic and Genome Research, January 2009, Karger Publishers

    Edward L Braun

  109. Phylogenomic evidence for multiple losses of flight in ratite birds

    Article • Proceedings of the National Academy of Sciences, September 2008, Proceedings of the National Academy of Sciences

    Dr Rebecca T Kimball, Edward L Braun

  110. Duplications and functional divergence of ADP-glucose pyrophosphorylase genes in plants

    Article • BMC Evolutionary Biology, August 2008, Springer Science + Business Media

    Edward L Braun

  111. A Phylogenomic Study of Birds Reveals Their Evolutionary History

    Article • Science, June 2008, American Association for the Advancement of Science

    Dr Rebecca T Kimball, Edward L Braun

  112. Turtle isochore structure is intermediate between amphibians and other amniotes

    Article • Integrative and Comparative Biology, June 2008, Oxford University Press (OUP)

    Edward L Braun

  113. Duplication of Accelerated Evolution and Growth Hormone Gene in Passerine Birds

    Article • Molecular Biology and Evolution, February 2008, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  114. Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes

    Article • Gene, February 2008, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  115. PHYLOGENOMICS AND SECONDARY PLASTIDS: A LOOK BACK AND A LOOK AHEAD

    Article • Journal of Phycology, February 2008, Wiley

    Edward L Braun

  116. GENOMIC INSIGHTS INTO EVOLUTIONARY RELATIONSHIPS AMONG HETEROKONT LINEAGES EMPHASIZING THE PHAEOPHYCEAE1

    Article • Journal of Phycology, January 2008, Wiley

    Ahmed Moustafa, Edward L Braun

  117. Duplication of Accelerated Evolution and Growth Hormone Gene in Passerine Birds

    Article • Molecular Biology and Evolution, January 2008, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  118. Patterns of Vertebrate Isochore Evolution Revealed by Comparison of Expressed Mammalian, Avian, and Crocodilian Genes

    Article • Journal of Molecular Evolution, August 2007, Springer Science + Business Media

    Dr Rebecca T Kimball, Edward L Braun

  119. The Two AGPase Subunits Evolve at Different Rates in Angiosperms, yet They Are Equally Sensitive to Activity-Altering Amino Acid Changes When Expressed in Bacteria

    Article • The Plant Cell, May 2007, Oxford University Press (OUP)

    Edward L Braun

  120. The Evolution of Seminal Ribonuclease: Pseudogene Reactivation or Multiple Gene Inactivation Events?

    Article • Molecular Biology and Evolution, January 2007, Oxford University Press (OUP)

    Edward L Braun

  121. PHYLOGENETIC POSITION OF THE NEW WORLD QUAIL (ODONTOPHORIDAE): EIGHT NUCLEAR LOCI AND THREE MITOCHONDRIAL REGIONS CONTRADICT MORPHOLOGY AND THE SIBLEY-AHLQUIST TAPESTRY

    Article • Ornithology, January 2007, American Ornithologists' Union

    Dr Rebecca T Kimball, Edward L Braun

  122. Mitochondrial Genomes and Avian Phylogeny: Complex Characters and Resolvability without Explosive Radiations

    Article • Molecular Biology and Evolution, October 2006, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  123. Molecular cloning of the estrogen and progesterone receptors of the American alligator

    Article • General and Comparative Endocrinology, March 2004, Elsevier

    Edward L Braun

  124. Genomics in Neurospora crassa: From One-Gene-One-Enzyme to 10,000 Genes

    Article • January 2004, Elsevier

    Edward L Braun

  125. The genome sequence of the filamentous fungus Neurospora crassa

    Article • Nature, April 2003, Springer Science + Business Media

    Professor jay dunlap, Edward L Braun

  126. Recently Duplicated Maize R2R3 Myb Genes Provide Evidence for Distinct Mechanisms of Evolutionary Divergence after Duplication

    Article • PLANT PHYSIOLOGY, February 2003, Oxford University Press (OUP)

    Edward L Braun

  127. Examining Basal Avian Divergences with Mitochondrial Sequences: Model Complexity, Taxon Sampling, and Sequence Length

    Article • Systematic Biology, July 2002, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  128. Functional Conservation of Plant Secondary Metabolic Enzymes Revealed by Complementation of Arabidopsis Flavonoid Mutants with Maize Genes

    Article • PLANT PHYSIOLOGY, September 2001, Oxford University Press (OUP)

    Edward L Braun

  129. Fungal Zuotin Proteins Evolved from MIDA1-like Factors by Lineage-Specific Loss of MYB Domains

    Article • Molecular Biology and Evolution, July 2001, Oxford University Press (OUP)

    Edward L Braun

  130. POLYTOMIES, THE POWER OF PHYLOGENETIC INFERENCE, AND THE STOCHASTIC NATURE OF MOLECULAR EVOLUTION: A COMMENT ON WALSH ET AL. (1999)

    Article • Evolution, June 2001, Wiley

    Dr Rebecca T Kimball, Edward L Braun

  131. A molecular phylogeny of the peacock-pheasants (Galliformes Polyplectron spp.) indicates loss and reduction of ornamental traits and display behaviours

    Article • Biological Journal of the Linnean Society, June 2001, Oxford University Press (OUP)

    Dr Rebecca T Kimball, Edward L Braun

  132. Evolution of the Mitochondrial DNA Control Region and Cytochrome b Genes and the Inference of Phylogenetic Relationships in the Avian Genus Lophura (Galliformes)

    Article • Molecular Phylogenetics and Evolution, May 2001, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  133. Chapter Five Transcription factors and metabolic engineering: Novel applications for ancient tools

    Article • January 2001, Elsevier

    Edward L Braun

  134. Mitochondrial DNA Phylogeny and Speciation in the Tragopans

    Article • Ornithology, October 2000, JSTOR

    Dr Rebecca T Kimball, Edward L Braun

  135. Large-Scale Comparison of Fungal Sequence Information: Mechanisms of Innovation in Neurospora crassa and Gene Loss in Saccharomyces cerevisiae

    Article • Genome Research, April 2000, Cold Spring Harbor Laboratory Press

    Edward L Braun

  136. Newly Discovered Plant c-myb-Like Genes Rewrite the Evolution of the Plant myb Gene Family

    Article • PLANT PHYSIOLOGY, September 1999, Oxford University Press (OUP)

    Edward L Braun

  137. The nop-1 gene of Neurospora crassa encodes a seven transmembrane helix retinal-binding protein homologous to archaeal rhodopsins

    Article • Proceedings of the National Academy of Sciences, July 1999, Proceedings of the National Academy of Sciences

    Edward L Braun

  138. A Molecular Phylogeny of the Pheasants and Partridges Suggests That These Lineages Are Not Monophyletic

    Article • Molecular Phylogenetics and Evolution, February 1999, Elsevier

    Dr Rebecca T Kimball, Edward L Braun

  139. Identification of the First Fungal Annexin: Analysis of Annexin Gene Duplications and Implications for Eukaryotic Evolution

    Article • Journal of Molecular Evolution, November 1998, Springer Science + Business Media

    Edward L Braun

  140. Resolution of the phylogenetic position of the Congo peafowl, Afropavo congensis: a biogeographic and evolutionary enigma

    Article • Proceedings of the Royal Society B Biological Sciences, October 1997, Royal Society Publishing

    Dr Rebecca T Kimball, Edward L Braun

  141. Expressed Sequences from Conidial, Mycelial, and Sexual Stages ofNeurospora crassa

    Article • Fungal Genetics and Biology, June 1997, Elsevier

    Edward L Braun

  142. A stationary-phase gene in Saccharomyces cerevisiae is a member of a novel, highly conserved gene family

    Article • Journal of Bacteriology, December 1996, ASM Journals

    Edward L Braun

  143. Stationary phase in Saccharomyces cerevisiae

    Article • Molecular Microbiology, March 1996, Wiley

    Edward L Braun

  144. Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae

    Article • Journal of Bacteriology, September 1994, ASM Journals

    Edward L Braun