All Stories

  1. Toward a simple yet efficient cost function for the optimization of Gaussian process regression model hyperparameters
  2. Creating Gaussian process regression models for molecular simulations using adaptive sampling
  3. Towards the simulation of biomolecules: optimisation of peptide-capped glycine using FFLUX
  4. Rhorix: Software for drawing the results of calculations of molecules
  5. QCTFF: On the construction of a novel protein force field
  6. Evaluation of aromatic amines with different purities and different solvent vehicles in the Ames test
  7. Scientists discuss about the application of topological methods to chemistry
  8. Where does charge reside in amino acids? The effect of side-chain protonation state on the atomic charges of Asp, Glu, Lys, His and Arg
  9. Accurate prediction of polarised high order electrostatic interactions for hydrogen bonded complexes using the machine learning method kriging
  10. Cytotoxicity towards CCO cells of imidazolium ionic liquids with functionalized side chains: Preliminary QSTR modeling using regression and classification based approaches
  11. Conformational dynamics of carbohydrates: Raman optical activity of d-glucuronic acid and N-acetyl-d-glucosamine using a combined molecular dynamics and quantum chemical approach
  12. Calculation of Raman optical activity spectra for vibrational analysis
  13. The Raman optical activity of β-d-xylose: where experiment and computation meet
  14. Chemometric modeling of the chromatographic lipophilicity parameter logk0 of ionic liquid cations with ETA and QTMS descriptors
  15. Predictive QSAR modelling of algal toxicity of ionic liquids and its interspecies correlation with Daphnia toxicity
  16. Linear Free-Energy Relationships between a Single Gas-Phase Ab Initio Equilibrium Bond Length and Experimental pKaValues in Aqueous Solution
  17. Quantitative structure–activity relationship for toxicity of ionic liquids to Daphnia magna: Aromaticity vs. lipophilicity
  18. Comprehensive Analysis of Energy Minima of the 20 Natural Amino Acids
  19. Prediction of Intramolecular Polarization of Aromatic Amino Acids Using Kriging Machine Learning
  20. Electrostatic Forces: Formulas for the First Derivatives of a Polarizable, Anisotropic Electrostatic Potential Energy Function Based on Machine Learning
  21. Spherical tensor multipolar electrostatics and smooth particle mesh Ewald summation: a theoretical study
  22. The prediction of atomic kinetic energies from coordinates of surrounding atoms using kriging machine learning
  23. The QTAIM Perspective of Chemical Bonding
  24. Multipolar electrostatics based on the Kriging machine learning method: an application to serine
  25. Theoretical Prediction of Hydrogen-Bond Basicity p K BHX Using Quantum Chemical Topology Descriptors
  26. The hydration of serine: multipole moments versus point charges
  27. Multipolar electrostatics
  28. Characterising Heterocyclic Rings Through Quantum Chemical Topology
  29. Multipolar electrostatics for proteins: Atom-atom electrostatic energies in crambin
  30. Characterization of Heterocyclic Rings through Quantum Chemical Topology
  31. Relationship between experimental pK a values in aqueous solution and a gas phase bond length in bicyclo[2.2.2]octane and cubane carboxylic acids
  32. Accuracy and tractability of a kriging model of intramolecular polarizable multipolar electrostatics and its application to histidine
  33. Predicting pK a Values in Aqueous Solution for the Guanidine Functional Group from Gas Phase Ab Initio Bond Lengths
  34. Domain-Averaged Exchange-Correlation Energies as a Physical Underpinning for Chemical Graphs
  35. Unified approach to multipolar polarisation and charge transfer for ions: microhydrated Na+
  36. Conformational study of the open-chain and furanose structures of d-erythrose and d-threose
  37. New Insights in Atom-Atom Interactions for Future Drug Design
  38. Polarisable multipolar electrostatics from the machine learning method Kriging: an application to alanine
  39. Polarisable multipolar electrostatics from the machine learning method Kriging: an application to alanine
  40. Quantum Chemical Topology: Knowledgeable atoms in peptides
  41. Chapter 6. Quantum Chemical Topology: on Descriptors, Potentials and Fragments
  42. Computational study of mutarotation in erythrose and threose
  43. Fully Analytical Integration Over the 3D Volume Bounded by the β Sphere in Topological Atoms
  44. Intramolecular polarisable multipolar electrostatics from the machine learning method Kriging
  45. Aqueous Imidazole Solutions: A Structural Perspective from Simulations with High-Rank Electrostatic Multipole Moments
  46. Solving the Schrödinger Equation
  47. Nature of Chemical Interactions from the Profiles of Electron Delocalization Indices
  48. Calculation of Raman Optical Activity Spectra of Methyl-β-d-Glucose Incorporating a Full Molecular Dynamics Simulation of Hydration Effects
  49. pKa Prediction from an ab initio bond length: part 2—phenols
  50. The dynamic behavior of a liquid ethanol–water mixture: a perspective from quantum chemical topology
  51. pKa prediction from an ab initio bond length: Part 3—benzoic acids and anilines
  52. Solving The Schrödinger Equation
  53. A Generic Force Field Based on Quantum Chemical Topology
  54. Thermodynamic and kinetic effects of Lewis acid complexation on a Schiff base present in two tautomeric forms
  55. A water potential based on multipole moments trained by machine learning — Reducing maximum energy errors
  56. Developing Quantum Topological Molecular Similarity (QTMS)
  57. Convergence of the multipole expansion for 1,2 Coulomb interactions: The modified multipole shifting algorithm
  58. Properties of liquid water from a systematic refinement of a high-rank multipolar electrostatic potential
  59. In Silico Techniques for the Identification of Bioisosteric Replacements for Drug Design
  60. Potential Energy Surfaces Fitted by Artificial Neural Networks
  61. Prediction of the Basicities of Pyridines in the Gas Phase and in Aqueous Solution
  62. Simulation of liquid imidazole using a high-rank quantum topological electrostatic potential
  63. An investigation of the conductivity of peptide nanotube networks prepared by enzyme-triggered self-assembly
  64. QSAR with quantum topological molecular similarity indices: toxicity of aromatic aldehydes toTetrahymena pyriformis
  65. p K a Prediction from “Quantum Chemical Topology” Descriptors
  66. Quantum Isostere Database: A Web-Based Tool Using Quantum Chemical Topology To Predict Bioisosteric Replacements for Drug Design
  67. Dynamically Polarizable Water Potential Based on Multipole Moments Trained by Machine Learning
  68. Toward anab initiofragment database for bioisosterism: Dependence of QCT properties on level of theory, conformation, and chemical environment
  69. Prediction of Interaction Energies of Substituted Hydrogen-Bonded Watson−Crick Cytosine:Guanine 8X Base Pairs
  70. Predictive QSPR modeling of the acidic dissociation constant (pKa) of phenols in different solvents
  71. Atoms in Molecules and Population Analysis
  72. Optimal construction of a fast and accurate polarisable water potential based on multipole moments trained by machine learning
  73. A refined model for prediction of hydrogen bond acidity and basicity parameters from quantum chemical molecular descriptors
  74. Geometrically faithful homeomorphisms between the electron density and the bare nuclear potential
  75. Role of Short-Range Electrostatics in Torsional Potentials †
  76. Quantum Topological QSAR Models based on the MOLMAP Approach
  77. Beyond Point Charges: Dynamic Polarization from Neural Net Predicted Multipole Moments
  78. Exploring Predictive QSAR Models Using Quantum Topological Molecular Similarity (QTMS) Descriptors for Toxicity of Nitroaromatics toSaccharomyces cerevisiae
  79. The importance of multipole moments when describing water and hydrated amino acid cluster geometry
  80. Computational Study of Substituent Effects on the Interaction Energies of Hydrogen-Bonded Watson−Crick Cytosine:Guanine Base Pairs
  81. Exploring predictive QSAR models for hepatocyte toxicity of phenols using QTMS descriptors
  82. The Calculation of Polar Surface Area from First Principles: An Application of Quantum Chemical Topology to Drug Design
  83. Properties and 3D Structure of Liquid Water:  A Perspective from a High-Rank Multipolar Electrostatic Potential
  84. Room temperature ionic liquids containing low water concentrations—a molecular dynamics study
  85. Book review
  86. Electronic structure calculations of vitamin E analogues: A model for calculated geometries, hyperfine coupling constants, reaction enthalpies (ΔHr) and relative bond dissociation enthalpies (ΔBDE)
  87. The Effects of Hydrogen-Bonding Environment on the Polarization and Electronic Properties of Water Molecules
  88. Atom-atom partitioning of total (super)molecular energy: The hidden terms of classical force fields
  89. Preface
  90. Calculation of the relative acidities and oxidation potentials of para-substituted phenols. A model for α-tocopherol in solution
  91. Atoms in molecules
  92. Long range behavior of high-rank topological multipole moments
  93. Visualization and integration of quantum topological atoms by spatial discretization into finite elements
  94. Chapter 15 A quantitative structure-activity relationship of 1,4-dihydropyridine calcium channel blockers with electronic descriptors produced by quantum chemical topology
  95. A polarizable high-rank quantum topological electrostatic potential developed using neural networks: Molecular dynamics simulations on the hydrogen fluoride dimer
  96. Transferability of Quantum Topological Atoms in Terms of Electrostatic Interaction Energy
  97. Quantum Chemical Topology: Bonds and Potentials
  98. QSAR models based on quantum topological molecular similarity
  99. Substituent effects on the stability of para substituted benzyl radicals
  100. Electron Delocalization and Aromaticity in Linear Polyacenes:  Atoms in Molecules Multicenter Delocalization Index
  101. Computation of Relative Bond Dissociation Enthalpies (ΔBDE) of Phenolic Antioxidants from Quantum Topological Molecular Similarity (QTMS)
  102. A convergent multipole expansion for 1,3 and 1,4 Coulomb interactions
  103. The cytotoxicity of ortho alkyl substituted 4-X-phenols: A QSAR based on theoretical bond lengths and electron densities
  104. The electrostatic potential generated by topological atoms. II. Inverse multipole moments
  105. Rendering of quantum topological atoms and bonds
  106. Quantum Chemical Topology: on Bonds and Potentials
  107. Mechanistic aspects of hydrogen abstraction for phenolic antioxidants. Electronic structure and topological electron density analysis
  108. Quantitative structure-activity relationships of mutagenic activity from quantum topological descriptors: triazenes and halogenated hydroxyfuranones (mutagen-X) derivatives
  109. High-Speed Calculation of AIM Charges through the Electronegativity Equalization Method
  110. Polarizability of acetanilide and RDX in the crystal: effect of molecular geometry
  111. The quantum topological electrostatic potential as a probe for functional group transferability
  112. Distributed polarizability analysis for para-nitroaniline and meta-nitroaniline: Functional group and charge-transfer contributions
  113. Quantitative structure–activity relationships from optimised ab initio bond lengths: steroid binding affinity and antibacterial activity of nitrofuran derivatives
  114. Estimation of p K a Using Quantum Topological Molecular Similarity Descriptors:  Application to Carboxylic Acids, Anilines and Phenols
  115. Simulation of liquid water using a high-rank quantum topological electrostatic potential
  116. High-rank quantum topological electrostatic potential: Molecular dynamics simulation of liquid hydrogen fluoride
  117. Atomic Properties of Amino Acids: Computed Atom Types as a Guide for Future Force-Field Design
  118. “Chemical Bonding and Molecular Geometry”: Comments on a Book Review
  119. The electrostatic potential generated by topological atoms: a continuous multipole method leading to larger convergence regions
  120. An algorithm to delineate and integrate topological basins in a three-dimensional quantum mechanical density function
  121. Ester Hydrolysis Rate Constant Prediction from Quantum Topological Molecular Similarity Descriptors
  122. Atomic Properties of Selected Biomolecules: Quantum Topological Atom Types of Hydrogen, Oxygen, Nitrogen and Sulfur Occurring in Natural Amino Acids and Their Derivatives
  123. An improved algorithm to locate critical points in a 3D scalar field as implemented in the program MORPHY
  124. Functional groups expressed as graphs extracted from the Laplacian of the electron density
  125. Atomic Properties of Selected Biomolecules:  Quantum Topological Atom Types of Carbon Occurring in Natural Amino Acids and Derived Molecules
  126. The full topology of the Laplacian of the electron density: scrutinising a physical basis for the VSEPR model
  127. Improved convergence of the ‘atoms in molecules’ multipole expansion of electrostatic interaction
  128. A topological study of homonuclear multiple bonds between the elements of group 14
  129. The prediction of energies and geometries of hydrogen bonded DNA base-pairs via a topological electrostatic potentialElectronic supplementary information (ESI) available: Comparison of the BSSE corrected interaction energies, geometrical parameters and...
  130. The Elusive Atomic Rationale for DNA Base Pair Stability
  131. Quantum topological molecular similarity. Part 5. Further development with an application to the toxicity of polychlorinated dibenzo-p-dioxinsThe IUPAC name for dibenzo-p-dioxin is dibenzo[b,e][1,4]dioxin.(PCDDs)
  132. Distributed response analysis of conductive behavior in single molecules
  133. Quantum topological molecular similarity. Part 4.See ref. 7 for Part 3. A QSAR study of cell growth inhibitory properties of substituted (E)-1-phenylbut-1-en-3-ones
  134. Convergence of the Electrostatic Interaction Based on Topological Atoms
  135. On the Full Topology of the Laplacian of the Electron Density II:  Umbrella Inversion of the Ammonia Molecule
  136. Distributed polarizability of the water dimer: Field-induced charge transfer along the hydrogen bond
  137. Quantum Molecular Similarity. 3. QTMS Descriptors
  138. Atom–atom partitioning of intramolecular and intermolecular Coulomb energy
  139. A fast algorithm to compute atomic charges based on the topology of the electron density
  140. Protonation energies and the Laplacian of the electron density: A critical examination
  141. Distributed Response Analysis of the Water Dimer
  142. MRS 2001 (Boston): Design and Quantification of a Nanoscale Field Effect Transistor: Distributed Response Analysis for Investigating Conductive Behaviour.
  143. Convergence of the multipole expansion for electrostatic potentials of finite topological atoms
  144. Atomic Partitioning of Molecular Electrostatic Potentials
  145. Atomic properties of selected biomolecules. Part 1. The interpretation of atomic integration errors
  146. On the full topology of the Laplacian of the electron density
  147. Atomic properties of selected biomolecules. Part 1. The interpretation of atomic integration errors
  148. Quantum Molecular Similarity. 1. BCP Space
  149. Quantum molecular similarity. Part 2: The relation between properties in BCP space and bond length
  150. Quantum molecular similarity. Part 2: The relation between properties in BCP space and bond length
  151. Characterization of a Dihydrogen Bond on the Basis of the Electron Density
  152. Characterization of an agostic bond on the basis of the electron density
  153. A method to integrate an atom in a molecule without explicit representation of the interatomic surface
  154. The polarizabilities of halide ions in crystals
  155. On the differential geometry of interatomic surfaces
  156. Topological studies of the charge density of some group 2 metallocenes M(η 5 -C 5 H 5 ) 2 (M = Mg or Ca)
  157. Integration of atoms in molecules: a critical examination
  158. Integration of atoms in molecules: a critical examination
  159. MORPHY, a program for an automated “atoms in molecules” analysis
  160. The Electron Pair
  161. On the polarizabilities of the doubly charged ions of group IIB
  162. The influence of improved dipole-quadrupole dispersion coefficients on the predicted cohesion of ionic oxides
  163. Conformational dependence of atomic multipole moments
  164. Potential energy surfaces of several van der Waals complexes modelled using distributed multipoles
  165. Characterization of C-H-O Hydrogen Bonds on the Basis of the Charge Density
  166. Potential energy surfaces of van der Waals complexes of water and hydrogen halides modeled using distributed multipoles
  167. Molecular similarity and complementarity based on the theory of atoms in molecules
  168. A robust algorithm to locate automatically all types of critical points in the charge density and its Laplacian
  169. Formulae for the first and second derivatives of anisotropie potentials with respect to geometrical parameters
  170. Effect of Twisting a Polypeptide on Its Geometry and Electron Distribution
  171. Theoretical Definition of a Functional Group and the Molecular Orbital Paradigm
  172. Die Theoretische Definition einer funktionellen Gruppe und das Paradigma des Molekülorbitals
  173. An analytical expression for interatomic surfaces in the theory of atoms in molecules
  174. Topography of potential-energy surfaces for Van der Waals complexes
  175. Structures of cubic and orthorhombic phases of acetylene by single-crystal neutron diffraction. Erratum
  176. Structures of cubic and orthorhombic phases of acetylene by single-crystal neutron diffraction
  177. Theoretical study of neutral and of acid and base-promoted hydrolysis of formamide
  178. Similarity and complementarity in chemistry
  179. The existence of an intramolecular CHO hydrogen bond in creatine and carbamoyl sarcosine
  180. An ab initio study of crystal field effects, part 3: Solid- and gas-phase geometry of formamide, modeling the changes in a peptide group due to hydrogen bonds
  181. Lithium hydrogen maleate dihydrate
  182. An ab-initio study of crystal field effects: solid-state and gas-phase geometry of acetamide
  183. Ab Initio Studies of Crystal Field Effects in Acetylene.
  184. Quantum topological atoms
  185. Topological Atom–Atom Partitioning of Molecular Exchange Energy and its Multipolar Convergence