All Stories

  1. Broad and thematic remodeling of the surface glycoproteome on isogenic cells transformed with driving proliferative oncogenes

    Article • October 2019, Cold Spring Harbor Laboratory Press

    Dr Nicholas M Riley

  2. Mutating stress-defense regulators in yeast improves biofuels engineering

    Article • PLoS ONE, May 2019, PLOS

    Dr Nicholas M Riley, Audrey Gasch

  3. Interactive Peptide Spectral Annotator: A Versatile Web-Based Tool for Proteomic Applications

    Article • Molecular & Cellular Proteomics, May 2019, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Nicholas M Riley

  4. Lysosome Targeting Chimeras (LYTACs) for the Degradation of Secreted and Membrane Proteins

    Article • March 2019, American Chemical Society (ACS)

    Dr Nicholas M Riley

  5. Lysosome Targeting Chimeras (LYTACs) for the Degradation of Secreted and Membrane Proteins

    Article • March 2019, American Chemical Society (ACS)

    Dr Nicholas M Riley

  6. Capturing site-specific heterogeneity with large-scale N-glycoproteome analysis

    Article • Nature Communications, March 2019, Springer Science + Business Media

    Dr Nicholas M Riley

  7. Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast

    Article • PLoS Genetics, March 2019, PLOS

    Dr Nicholas M Riley, Audrey Gasch

  8. Top-Down Characterization of Proteins with Intact Disulfide Bonds Using Activated-Ion Electron Transfer Dissociation

    Article • Analytical Chemistry, July 2018, American Chemical Society (ACS)

    Dr Nicholas M Riley

  9. The Value of Activated Ion Electron Transfer Dissociation for High-Throughput Top-Down Characterization of Intact Proteins

    Article • Analytical Chemistry, June 2018, American Chemical Society (ACS)

    Dr Nicholas M Riley

  10. Improved Precursor Characterization for Data-Dependent Mass Spectrometry

    Article • Analytical Chemistry, January 2018, American Chemical Society (ACS)

    Dr Nicholas M Riley

  11. The Role of Electron Transfer Dissociation in Modern Proteomics

    Article • Analytical Chemistry, December 2017, American Chemical Society (ACS)

    Dr Nicholas M Riley

  12. Sequencing Larger Intact Proteins (30-70 kDa) with Activated Ion Electron Transfer Dissociation

    Article • Journal of the American Society for Mass Spectrometry, October 2017, Springer Science + Business Media

    Dr Nicholas M Riley

  13. Activated Ion-Electron Transfer Dissociation Enables Comprehensive Top-Down Protein Fragmentation

    Article • Journal of Proteome Research, June 2017, American Chemical Society (ACS)

    Dr Nicholas M Riley

  14. Negative Electron Transfer Dissociation Sequencing of Increasingly Sulfated Glycosaminoglycan Oligosaccharides on an Orbitrap Mass Spectrometer

    Article • Journal of the American Society for Mass Spectrometry, June 2017, Springer Science + Business Media

    Dr Nicholas M Riley

  15. Implementation of Activated Ion Electron Transfer Dissociation on a Quadrupole-Orbitrap-Linear Ion Trap Hybrid Mass Spectrometer

    Article • Analytical Chemistry, April 2017, American Chemical Society (ACS)

    Dr Nicholas M Riley

  16. Phosphoproteomics with Activated Ion Electron Transfer Dissociation

    Article • Analytical Chemistry, April 2017, American Chemical Society (ACS)

    Dr Nicholas M Riley

  17. Sulfur Pentafluoride is a Preferred Reagent Cation for Negative Electron Transfer Dissociation

    Article • Journal of the American Society for Mass Spectrometry, March 2017, Springer Science + Business Media

    Dr Nicholas M Riley

  18. Multi-omics Evidence for Inheritance of Energy Pathways in Red Blood Cells

    Article • Molecular & Cellular Proteomics, October 2016, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Nicholas M Riley

  19. Full-Featured Search Algorithm for Negative Electron-Transfer Dissociation

    Article • Journal of Proteome Research, July 2016, American Chemical Society (ACS)

    Dr Nicholas M Riley

  20. Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research

    Article • G3 Genes Genomes Genetics, April 2016, Genetics Society of America

    Dr Nicholas M Riley, Dr Oleg V Moskvin

  21. Proteomics Moves into the Fast Lane

    Article • Cell Systems, March 2016, Elsevier

    Dr Nicholas M Riley

  22. Mitochondrial protein hyperacetylation in the failing heart

    Article • JCI Insight, February 2016, American Society for Clinical Investigation

    Dr Nicholas M Riley

  23. Enhanced Dissociation of Intact Proteins with High Capacity Electron Transfer Dissociation

    Article • Journal of the American Society for Mass Spectrometry, November 2015, Springer Science + Business Media

    Dr Nicholas M Riley

  24. Phosphoproteomics in the Age of Rapid and Deep Proteome Profiling

    Article • Analytical Chemistry, November 2015, American Chemical Society (ACS)

    Dr Nicholas M Riley

  25. The Negative Mode Proteome with Activated Ion Negative Electron Transfer Dissociation (AI-NETD)

    Article • Molecular & Cellular Proteomics, July 2015, American Society for Biochemistry & Molecular Biology (ASBMB)

    Dr Nicholas M Riley

  26. A Calibration Routine for Efficient ETD in Large-Scale Proteomics

    Article • Journal of the American Society for Mass Spectrometry, June 2015, Springer Science + Business Media

    Dr Nicholas M Riley

  27. Activated Ion Electron Transfer Dissociation for Improved Fragmentation of Intact Proteins

    Article • Analytical Chemistry, June 2015, American Chemical Society (ACS)

    Dr Nicholas M Riley

  28. Coupling Capillary Zone Electrophoresis with Electron Transfer Dissociation and Activated Ion Electron Transfer Dissociation for Top-Down Proteomics

    Article • Analytical Chemistry, May 2015, American Chemical Society (ACS)

    Dr Nicholas M Riley

  29. Neutron-Encoded Mass Signatures for Quantitative Top-Down Proteomics

    Article • Analytical Chemistry, February 2014, American Chemical Society (ACS)

    Timothy W Rhoads, Dr Nicholas M Riley