All Stories

  1. Parkinson’s disease and schizophrenia interactomes contain temporally distinct gene clusters underlying comorbid mechanisms and unique disease processes

    Article • Schizophrenia, February 2024, Springer Science + Business Media

    Madhavi K Ganapathiraju

  2. Mitotic Block and Epigenetic Repression Underlie Neurodevelopmental Defects and Neurobehavioral Deficits in Congenital Heart Disease

    Article • November 2023, Cold Spring Harbor Laboratory Press

    Madhavi K Ganapathiraju

  3. Uncompensated mitochondrial oxidative stress underlies heart failure in an iPSC-derived model of congenital heart disease

    Article • Cell Stem Cell, May 2022, Elsevier

    Madhavi K Ganapathiraju

  4. Novel Protein–Protein Interactions Highlighting the Crosstalk between Hypoplastic Left Heart Syndrome, Ciliopathies and Neurodevelopmental Delays

    Article • Genes, April 2022, MDPI AG

    Madhavi K Ganapathiraju

  5. GPX4-associated Sedaghatian Type Spondylometaphyseal Dysplasia: A Protein Interactome Perspective

    Article • February 2022, Cold Spring Harbor Laboratory Press

    Madhavi K Ganapathiraju

  6. Novel Protein-Protein Interactions Highlighting the Crosstalk between Hypoplastic Left-Heart Syndrome, Ciliopathies and Neurodevelopmental Delays

    Article • February 2022, MDPI AG

    Madhavi K Ganapathiraju

  7. Circadian transcription factor NPAS2 and the NAD + ‐dependent deacetylase SIRT1 interact in the mouse nucleus accumbens and regulate reward

    Article • European Journal of Neuroscience, January 2022, Wiley

    Madhavi K Ganapathiraju

  8. Benchmark Evaluation of Protein–Protein Interaction Prediction Algorithms

    Article • Molecules, December 2021, MDPI AG

    Madhavi K Ganapathiraju

  9. Generalized and social anxiety disorder interactomes show distinctive overlaps with striosome and matrix interactomes

    Article • Scientific Reports, September 2021, Springer Science + Business Media

    Madhavi K Ganapathiraju

  10. Malignant Peritoneal Mesothelioma Interactome with 417 Novel Protein-Protein Interactions

    Article • June 2021, Springer Science + Business Media

    Madhavi K Ganapathiraju

  11. Malignant Pleural Mesothelioma Interactome with 364 Novel Protein-Protein Interactions

    Article • Cancers, April 2021, MDPI AG

    Madhavi K Ganapathiraju

  12. A reference catalog of DNA palindromes in the human genome and their variations in 1000 Genomes

    Article • Human Genome Variation, November 2020, Springer Science + Business Media

    Madhavi K Ganapathiraju

  13. Cilia interactome with predicted protein–protein interactions reveals connections to Alzheimer’s disease, aging and other neuropsychiatric processes

    Article • Scientific Reports, September 2020, Springer Science + Business Media

    Madhavi K Ganapathiraju

  14. Potentially repurposable drugs for COVID-19 identified from SARS-CoV-2 Host Protein Interactome

    Article • May 2020, Springer Science + Business Media

    Madhavi K Ganapathiraju

  15. Interactome of SARS-CoV-2 / nCoV19 modulated host proteins with computationally predicted PPIs

    Article • May 2020, Springer Science + Business Media

    Madhavi K Ganapathiraju

  16. Antibody Exchange: Information Extraction of Biological Antibody Donation and a Web-Portal to Find Donors and Seekers

    Article • Data, November 2017, MDPI AG

    Madhavi K Ganapathiraju

  17. The complex genetics of hypoplastic left heart syndrome

    Article • Nature Genetics, May 2017, Nature

    Madhavi K Ganapathiraju

  18. Demonstration Study: A Protocol to Combine Online Tools and Databases for Identifying Potentially Repurposable Drugs

    Article • Data, May 2017, MDPI AG

    Madhavi K Ganapathiraju

  19. Generating testable hypotheses for schizophrenia and rheumatoid arthritis pathogenesis by integrating epidemiological, genomic, and protein interaction data

    Article • Schizophrenia, February 2017, Nature

    Madhavi K Ganapathiraju

  20. A pilot study on the prevalence of DNA palindromes in breast cancer genomes

    Article • BMC Medical Genomics, December 2016, Springer Science + Business Media

    Madhavi K Ganapathiraju

  21. Is the average shortest path length of gene set a reflection of their biological relatedness?

    Article • Journal of Bioinformatics and Computational Biology, December 2016, World Scientific Pub Co Pte Lt

    Madhavi K Ganapathiraju

  22. A Protocol for Identifying Potentially Repurposable Drugs Using Online Tools and Databases

    Article • October 2016, MDPI AG

    Madhavi K Ganapathiraju

  23. Bio-Resource Exchange: Study of Prevalence of Antibody Donation and Development of a Web Portal to Facilitate it

    Article • October 2016, MDPI AG

    Madhavi K Ganapathiraju

  24. Erratum: Schizophrenia interactome: fully-labeled interactome network

    Article • Schizophrenia, August 2016, Nature

    Madhavi K Ganapathiraju

  25. Predicted protein interactions of IFITMs which inhibit Zika virus infection

    Article • F1000Research, August 2016, Faculty of 1000, Ltd.

    Madhavi K Ganapathiraju

  26. Novel protein-protein interactions of Schizophrenia genes

    Article • Schizophrenia, April 2016, Nature

    Madhavi K Ganapathiraju

  27. A web-application for interactome based analysis of pathway, disease and drug-targets of human genes

    Article • BMC Medical Genomics, December 2015, Springer Science + Business Media

    Madhavi K Ganapathiraju

  28. Learning structure in gene expression data using deep architectures, with an application to gene clustering

    Article • November 2015, Cold Spring Harbor Laboratory Press

    Madhavi K Ganapathiraju

  29. Towards extracting supporting information about predicted protein-protein interactions

    Article • November 2015, Cold Spring Harbor Laboratory Press

    Madhavi K Ganapathiraju

  30. Global genetic analysis in mice unveils central role for cilia in congenital heart disease

    Article • Nature, March 2015, Nature

    Madhavi K Ganapathiraju

  31. Antiviral Activity of Human OASL Protein Is Mediated by Enhancing Signaling of the RIG-I RNA Sensor

    Article • Immunity, June 2014, Elsevier

    Madhavi K Ganapathiraju

  32. Predicting gene ontology annotations of orphan GWAS genes using protein-protein interactions

    Article • Algorithms for Molecular Biology, January 2014, Springer Science + Business Media

    Madhavi K Ganapathiraju

  33. Research prioritization through prediction of future impact on biomedical science: a position paper on inference-analytics

    Article • GigaScience, August 2013, Oxford University Press (OUP)

    Madhavi K Ganapathiraju

  34. Analysis ofLMNB1Duplications in Autosomal Dominant Leukodystrophy Provides Insights into Duplication Mechanisms and Allele-Specific Expression

    Article • Human Mutation, May 2013, Wiley

    Madhavi K Ganapathiraju

  35. SUITE OF TOOLS FOR STATISTICAL N-GRAM LANGUAGE MODELING FOR PATTERN MINING IN WHOLE GENOME SEQUENCES

    Article • Journal of Bioinformatics and Computational Biology, December 2012, World Scientific Pub Co Pte Lt

    Madhavi K Ganapathiraju

  36. Wiki-Pi: A Web-Server of Annotated Human Protein-Protein Interactions to Aid in Discovery of Protein Function

    Article • PLOS One, November 2012, PLOS

    Madhavi K Ganapathiraju

  37. An efficient heuristic method for active feature acquisition and its application to protein-protein interaction prediction

    Article • BMC Proceedings, January 2012, Springer Science + Business Media

    Madhavi K Ganapathiraju

  38. Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction

    Article • Microbial Informatics and Experimentation, January 2012, Springer Science + Business Media

    Madhavi K Ganapathiraju

  39. N-gram analysis of 970 microbial organisms reveals presence of biological language models

    Article • BMC Bioinformatics, January 2011, Springer Science + Business Media

    Madhavi K Ganapathiraju

  40. Active learning for human protein-protein interaction prediction

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Madhavi K Ganapathiraju

  41. Active machine learning for transmembrane helix prediction

    Article • BMC Bioinformatics, January 2010, Springer Science + Business Media

    Madhavi K Ganapathiraju

  42. Transmembrane helix prediction using amino acid property features and latent semantic analysis

    Article • BMC Bioinformatics, January 2008, Springer Science + Business Media

    Madhavi K Ganapathiraju

  43. TMpro web server and web service: transmembrane helix prediction through amino acid property analysis

    Article • Bioinformatics, August 2007, Oxford University Press (OUP)

    Madhavi K Ganapathiraju

  44. Evolutionary insights from suffix array-based genome sequence analysis

    Article • Journal of Biosciences, August 2007, Springer Science + Business Media

    Madhavi K Ganapathiraju

  45. Comparison of Stability Predictions and Simulated Unfolding of Rhodopsin Structures†

    Article • Photochemistry and Photobiology, March 2007, American Society for Photobiology

    Madhavi K Ganapathiraju

  46. Retinitis pigmentosa associated with rhodopsin mutations: Correlation between phenotypic variability and molecular effects

    Article • Vision Research, December 2006, Elsevier

    Madhavi K Ganapathiraju

  47. BLMT

    Article • Applied Bioinformatics, January 2004, Springer Science + Business Media

    Madhavi K Ganapathiraju