All Stories

  1. Transcriptomic Analysis of the Human Habenula in Schizophrenia

    Article • American Journal of Psychiatry, November 2025, American Psychiatric Association

    Louise Huuki-Myers, Leonardo Collado Torres

  2. Step-by-step R code for accessing over 70,000 human RNA-seq samples using recount (Bioconductor)

    Article • F1000Research, August 2017, Faculty of 1000, Ltd.

    Leonardo Collado Torres, Leonardo Collado Torres

  3. Improving the value of public RNA-seq expression data by phenotype prediction

    Article • June 2017, Cold Spring Harbor Laboratory Press

    Leonardo Collado Torres

  4. Reproducible RNA-seq analysis using recount2

    Article • Nature Biotechnology, April 2017, Nature

    Leonardo Collado Torres

  5. Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive

    Article • December 2016, Springer Science + Business Media

    Leonardo Collado Torres

  6. Flexible expressed region analysis for RNA-seq with derfinder

    Article • Nucleic Acids Research, September 2016, Oxford University Press (OUP)

    Leonardo Collado Torres

  7. Resource with analysis-ready RNA-seq data for ~60k human samples (pre-print)

    Article • August 2016, Cold Spring Harbor Laboratory Press

    Leonardo Collado Torres

  8. regionReport: a R package for creating HTML reports for RNA-seq results (version 2: final)

    Article • F1000Research, June 2016, Faculty of 1000, Ltd.

    Leonardo Collado Torres

  9. Rail-RNA applied to all public human RNA-seq data from the Sequence Read Archive (pre-print)

    Article • January 2016, Cold Spring Harbor Laboratory Press

    Leonardo Collado Torres

  10. Rail-RNA: scalable alignment software for RNA-seq (pre-print)

    Article • May 2015, Cold Spring Harbor Laboratory Press

    Leonardo Collado Torres

  11. regionReport: a R package for creating HTML reports for RNA-seq results (version 1)

    Article • F1000Research, May 2015, Faculty of 1000, Ltd.

    Leonardo Collado Torres

  12. regionReport: a R package for creating HTML reports for RNA-seq results (pre-print)

    Article • March 2015, Cold Spring Harbor Laboratory Press

    Leonardo Collado Torres

  13. derfinder: software for annotation-agnostic RNA-seq differential expression (pre-print 2)

    Article • February 2015, Cold Spring Harbor Laboratory Press

    Leonardo Collado Torres

  14. First derfinder application to brain data spanning the human lifespan

    Article • Nature Neuroscience, December 2014, Nature

    Leonardo Collado Torres

  15. Book chapter about RNA-seq

    Article • January 2014, Springer Science + Business Media

    Leonardo Collado Torres

  16. Species that interact with Bacillus subtilis in biofilm formation

    Article • Proceedings of the National Academy of Sciences, November 2011, Proceedings of the National Academy of Sciences

    Dr Elizabeth Anne Shank, Leonardo Collado Torres

  17. RegulonDB v7.0 including transcription start sites derived from high-throughput sequencing

    Article • Nucleic Acids Research, November 2010, Oxford University Press (OUP)

    Leonardo Collado Torres