Professor Johann Peter Gogarten

All Stories

1. 
   Darwin’s Coral of Life and Tangled Bank in Light of Gene Transfer and Constructive Neutral Evolution

   Article • Evolutionary Biology, October 2026, Springer Science + Business Media

   Professor Johann Peter Gogarten

2. 
   The Cyanobacterial dnaX Intein Encodes an Out-of-Frame Homing Endonuclease and is Sporadically Distributed in the Phylum

   Article • September 2026, openRxiv

   Professor Johann Peter Gogarten

3. 
   Inteins at Eleven Distinct Insertion Sites in Archaeal Helicase Subunit MCM Exhibit Varied Architectures and Activity Levels Across Archaeal Groups

   Article • DNA, August 2025, MDPI AG

   Professor Johann Peter Gogarten

4. 
   A systematic assessment of phylogenomic approaches for microbial species tree reconstruction

   Article • Peer Community Journal, July 2025, Peer Community In

   Professor Johann Peter Gogarten

5. 
   Inteins at Eleven Distinct Insertion Sites in Archaeal Helicase Subunit MCM Exhibit Varied Architectures and Activity Levels Across Archaeal Groups

   Article • May 2025, MDPI AG

   Professor Johann Peter Gogarten

6. 
   An Actively Homing Insertion Element in a Phage Methylase Contains a Hidden HNH Endonuclease

   Article • Genes, February 2025, MDPI AG

   Professor Johann Peter Gogarten

7. 
   Actinobacteriophage Inteins: Host Diversity, Local Dissemination, and Non-Canonical Architecture

   Article • January 2025, Cold Spring Harbor Laboratory Press

   Professor Johann Peter Gogarten

8. 
   A systematic assessment of phylogenomic approaches for microbial species tree reconstruction

   Article • November 2024, Cold Spring Harbor Laboratory Press

   Professor Johann Peter Gogarten

9. 
   Leptospira interrogans encodes a canonical BamA and three novel noNterm Omp85 outer membrane protein paralogs

   Article • Scientific Reports, August 2024, Springer Science + Business Media

   Professor Johann Peter Gogarten

10. 
    Investigating Additive and Replacing Horizontal Gene Transfers Using Phylogenies and Whole Genomes

    Article • Genome Biology and Evolution, August 2024, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

11. 
    Using the pan-genomic framework for the discovery of genomic islands in the haloarchaeon Halorubrum ezzemoulense

    Article • mBio, April 2024, ASM Journals

    Professor Johann Peter Gogarten

12. 
    Neighboring inteins interfere with one another’s homing capacity

    Article • PNAS Nexus, October 2023, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

13. 
    Using the pan-genomic framework for the discovery of genomic islands in the haloarchaeon Halorubrum ezzemoulense

    Article • October 2023, Cold Spring Harbor Laboratory Press

    Professor Johann Peter Gogarten

14. 
    The Evolutionary History of a DNA Methylase Reveals Frequent Horizontal Transfer and Within-Gene Recombination

    Article • Genes, January 2023, MDPI AG

    Professor Johann Peter Gogarten

15. 
    The Evolutionary History of a DNA Methylase Reveals Frequent Horizontal Transfer and Within-Gene Recombination

    Article • December 2022, MDPI AG

    Professor Johann Peter Gogarten

16. 
    Bacterial cooperation through horizontal gene transfer

    Article • Trends in Ecology & Evolution, March 2022, Elsevier

    Professor Johann Peter Gogarten

17. 
    An Efficient, Nonphylogenetic Method for Detecting Genes Sharing Evolutionary Signals in Phylogenomic Data Sets

    Article • Genome Biology and Evolution, August 2021, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

18. 
    Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support

    Article • Systematic Biology, July 2021, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

19. 
    The Evolutionary Origins of Extreme Halophilic Archaeal Lineages

    Article • Genome Biology and Evolution, July 2021, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

20. 
    Systematic Detection of Large-Scale Multigene Horizontal Transfer in Prokaryotes

    Article • Molecular Biology and Evolution, February 2021, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

21. 
    Insights into gene expression changes under conditions that facilitate horizontal gene transfer (mating) of a model Archaeon

    Article • July 2020, Cold Spring Harbor Laboratory Press

    Professor Johann Peter Gogarten

22. 
    The Impact of Restriction-Modification Systems on Mating in Haloferax volcanii

    Article • June 2020, Cold Spring Harbor Laboratory Press

    Professor Johann Peter Gogarten

23. 
    Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum

    Article • MicrobiologyOpen, April 2020, Wiley

    Professor Johann Peter Gogarten

24. 
    Expanding the utility of sequence comparisons using data from whole genomes

    Article • January 2020, Cold Spring Harbor Laboratory Press

    Professor Johann Peter Gogarten

25. 
    Reconstructing the evolutionary origins of extreme halophilic Archaeal lineages

    Article • December 2019, Cold Spring Harbor Laboratory Press

    Professor Johann Peter Gogarten

26. 
    Identification and characterization of putative Aeromonas spp. T3SS effectors

    Article • PLOS One, June 2019, PLOS

    Professor Johann Peter Gogarten, Professor Joerg Graf

27. 
    Complete Genome Sequence of Halorubrum ezzemoulense Strain Fb21

    Article • Microbiology Resource Announcements, March 2019, ASM Journals

    Professor Johann Peter Gogarten

28. 
    The Patchy Distribution of Restriction–Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria

    Article • Genes, March 2019, MDPI AG

    Professor Johann Peter Gogarten

29. 
    Identification and characterization of putative Aeromonas spp. T3SS effectors

    Article • March 2019, Cold Spring Harbor Laboratory Press

    Professor Johann Peter Gogarten

30. 
    The Patchy Distribution of Restriction-Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria.

    Article • February 2019, Cold Spring Harbor Laboratory Press

    Professor Johann Peter Gogarten

31. 
    Factors influencing bacterial microbiome composition in a wild non-human primate community in Taï National Park, Côte d’Ivoire

    Article • The ISME Journal, June 2018, Springer Science + Business Media

    Professor Johann Peter Gogarten

32. 
    Comparative Analysis of Surface Layer Glycoproteins and Genes Involved in Protein Glycosylation in the Genus Haloferax

    Article • Genes, March 2018, MDPI AG

    Professor Johann Peter Gogarten

33. 
    Characterizing the DNA Methyltransferases of Haloferax volcanii via Bioinformatics, Gene Deletion, and SMRT Sequencing

    Article • Genes, February 2018, MDPI AG

    Professor Johann Peter Gogarten

34. 
    Short branches lead to systematic artifacts when BLAST searches are used as surrogate for phylogenetic reconstruction

    Article • Molecular Phylogenetics and Evolution, February 2017, Elsevier

    Professor Johann Peter Gogarten

35. 
    Does Sequence Conservation Provide Evidence for Biological Function?

    Article • Trends in Microbiology, January 2017, Elsevier

    Professor Johann Peter Gogarten

36. 
    Is LUCA a thermophilic progenote?

    Article • Nature Microbiology, November 2016, Springer Science + Business Media

    Professor Johann Peter Gogarten

37. 
    Leisingera sp. JC1, a Bacterial Isolate from Hawaiian Bobtail Squid Eggs, Produces Indigoidine and Differentially Inhibits Vibrios

    Article • Frontiers in Microbiology, September 2016, Frontiers

    Professor Johann Peter Gogarten

38. 
    Impact of a homing intein on recombination frequency and organismal fitness

    Article • Proceedings of the National Academy of Sciences, July 2016, Proceedings of the National Academy of Sciences

    Professor Johann Peter Gogarten

39. 
    Horizontal gene transfer: building the web of life

    Article • Nature Reviews Genetics, August 2015, Springer Science + Business Media

    Professor Johann Peter Gogarten

40. 
    The pan-genome as a shared genomic resource: mutual cheating, cooperation and the black queen hypothesis

    Article • Frontiers in Microbiology, July 2015, Frontiers

    Professor Johann Peter Gogarten

41. 
    Ancient horizontal gene transfer and the last common ancestors

    Article • BMC Evolutionary Biology, April 2015, Springer Science + Business Media

    Professor Johann Peter Gogarten

42. 
    Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes

    Article • Frontiers in Microbiology, February 2015, Frontiers

    Professor Johann Peter Gogarten

43. 
    Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case

    Article • mBio, November 2014, ASM Journals

    Professor Joerg Graf, Professor Johann Peter Gogarten

44. 
    Inteins as indicators of gene flow in the halobacteria

    Article • Frontiers in Microbiology, June 2014, Frontiers

    Professor Johann Peter Gogarten

45. 
    AST: An Automated Sequence-Sampling Method for Improving the Taxonomic Diversity of Gene Phylogenetic Trees

    Article • PLOS One, June 2014, PLOS

    Professor Johann Peter Gogarten

46. 
    Population and genomic analysis of the genus Halorubrum

    Article • Frontiers in Microbiology, April 2014, Frontiers

    Professor Johann Peter Gogarten, ANTONIO VENTOSA

47. 
    Evidence from phylogenetic and genome fingerprinting analyses suggests rapidly changing variation in Halorubrum and Haloarcula populations

    Article • Frontiers in Microbiology, April 2014, Frontiers

    Professor Johann Peter Gogarten, ANTONIO VENTOSA

48. 
    Reconstructed Ancestral Myo-Inositol-3-Phosphate Synthases Indicate That Ancestors of the Thermococcales and Thermotoga Species Were More Thermophilic than Their Descendants

    Article • PLOS One, December 2013, PLOS

    Professor Johann Peter Gogarten

49. 
    The effects of model choice and mitigating bias on the ribosomal tree of life

    Article • Molecular Phylogenetics and Evolution, October 2013, Elsevier

    Professor Johann Peter Gogarten

50. 
    Distribution and Evolution of the Mobile vma-1b Intein

    Article • Molecular Biology and Evolution, September 2013, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

51. 
    Thermotoga lettingae Can Salvage Cobinamide To Synthesize Vitamin B12

    Article • Applied and Environmental Microbiology, September 2013, ASM Journals

    Professor Johann Peter Gogarten

52. 
    Reconstruction of Ancestral 16S rRNA Reveals Mutation Bias in the Evolution of Optimal Growth Temperature in the Thermotogae Phylum

    Article • Molecular Biology and Evolution, August 2013, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

53. 
    Orthologues, Paralogues and Horizontal Gene Transfer in the Human Holobiont

    Article • March 2013, Wiley

    Professor Johann Peter Gogarten

54. 
    Systematic inference of highways of horizontal gene transfer in prokaryotes

    Article • Bioinformatics, January 2013, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

55. 
    Biased Gene Transfer Contributes to Maintaining the Tree of Life

    Article • January 2013, Springer Science + Business Media

    Professor Johann Peter Gogarten

56. 
    Pre-Posting and OLEB

    Article • Origins of Life and Evolution of Biospheres, December 2012, Springer Science + Business Media

    Professor Johann Peter Gogarten

57. 
    The impact of HGT on phylogenomic reconstruction methods

    Article • Briefings in Bioinformatics, August 2012, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

58. 
    Erratum to: Molecular Evolution of Aminoacyl tRNA Synthetase Proteins in the Early History of Life

    Article • Origins of Life and Evolution of Biospheres, August 2012, Springer Science + Business Media

    Professor Johann Peter Gogarten

59. 
    Genes for the Major Structural Components of Thermotogales Species’ Togas Revealed by Proteomic and Evolutionary Analyses of OmpA and OmpB Homologs

    Article • PLOS One, June 2012, PLOS

    Professor Johann Peter Gogarten

60. 
    How Bacterial Lineages Emerge

    Article • Science, April 2012, American Association for the Advancement of Science

    Professor Johann Peter Gogarten

61. 
    Ancient origin of the divergent forms of leucyl-tRNA synthetases in the Halobacteriales

    Article • BMC Evolutionary Biology, January 2012, Springer Science + Business Media

    Professor Johann Peter Gogarten

62. 
    Quantifying Homologous Replacement of Loci between Haloarchaeal Species

    Article • Genome Biology and Evolution, January 2012, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

63. 
    Quartet decomposition server: a platform for analyzing phylogenetic trees

    Article • BMC Bioinformatics, January 2012, Springer Science + Business Media

    Professor Johann Peter Gogarten

64. 
    The Role of Reticulate Evolution in Creating Innovation and Complexity

    Article • International Journal of Evolutionary Biology, January 2012, Hindawi Publishing Corporation

    Professor Johann Peter Gogarten

65. 
    Vitamin B12 Synthesis and Salvage Pathways Were Acquired by Horizontal Gene Transfer to the Thermotogales

    Article • Genome Biology and Evolution, January 2012, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

66. 
    Molecular Evolution of Aminoacyl tRNA Synthetase Proteins in the Early History of Life

    Article • Origins of Life and Evolution of Biospheres, December 2011, Springer Science + Business Media

    Professor Johann Peter Gogarten

67. 
    Genome Sequence of Thermotoga sp. Strain RQ2, a Hyperthermophilic Bacterium Isolated from a Geothermally Heated Region of the Seafloor near Ribeira Quente, the Azores

    Article • Journal of Bacteriology, September 2011, ASM Journals

    Professor Johann Peter Gogarten

68. 
    Genome Sequence of Kosmotoga olearia Strain TBF 19.5.1, a Thermophilic Bacterium with a Wide Growth Temperature Range, Isolated from the Troll B Oil Platform in the North Sea

    Article • Journal of Bacteriology, September 2011, ASM Journals

    Professor Johann Peter Gogarten

69. 
    Multilevel populations and the evolution of antibiotic resistance through horizontal gene transfer

    Article • FEMS Microbiology Reviews, September 2011, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

70. 
    Detecting Highways of Horizontal Gene Transfer

    Article • Journal of Computational Biology, September 2011, Mary Ann Liebert Inc

    Professor Johann Peter Gogarten

71. 
    Reassessment of the Lineage Fusion Hypothesis for the Origin of Double Membrane Bacteria

    Article • PLOS One, August 2011, PLOS

    Professor Johann Peter Gogarten

72. 
    Biased gene transfer in microbial evolution

    Article • Nature Reviews Microbiology, June 2011, Springer Science + Business Media

    Professor Johann Peter Gogarten

73. 
    Complex Evolutionary History of the Aeromonas veronii Group Revealed by Host Interaction and DNA Sequence Data

    Article • PLOS One, February 2011, PLOS

    Professor Joerg Graf, Professor Johann Peter Gogarten

74. 
    Home and away- the evolutionary dynamics of homing endonucleases

    Article • BMC Evolutionary Biology, January 2011, Springer Science + Business Media

    Professor Johann Peter Gogarten

75. 
    Evolution of the archaea: emerging views on origins and phylogeny

    Article • Research in Microbiology, January 2011, Elsevier

    Professor Johann Peter Gogarten

76. 
    A Rooted Net of Life

    Article • Biology Direct, January 2011, Springer Science + Business Media

    Professor Johann Peter Gogarten

77. 
    Biased gene transfer and its implications for the concept of lineage

    Article • Biology Direct, January 2011, Springer Science + Business Media

    Professor Johann Peter Gogarten

78. 
    Biased gene transfer mimics patterns created through shared ancestry

    Article • Proceedings of the National Academy of Sciences, May 2010, Proceedings of the National Academy of Sciences

    Professor Johann Peter Gogarten

79. 
    Natural taxonomy in light of horizontal gene transfer

    Article • Biology & Philosophy, May 2010, Springer Science + Business Media

    Professor Johann Peter Gogarten

80. 
    Using comparative genome analysis to identify problems in annotated microbial genomes

    Article • Microbiology, April 2010, Society for General Microbiology

    Professor Johann Peter Gogarten

81. 
    Inferring the Ancient History of the Translation Machinery and Genetic Code via Recapitulation of Ribosomal Subunit Assembly Orders

    Article • PLOS One, March 2010, PLOS

    Professor Johann Peter Gogarten

82. 
    Rooting the Ribosomal Tree of Life

    Article • Molecular Biology and Evolution, March 2010, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

83. 
    Bioinformatics Research and Applications

    Article • January 2010

    Professor Johann Peter Gogarten

84. 
    Detecting Highways of Horizontal Gene Transfer

    Article • January 2010, Springer Science + Business Media

    Professor Johann Peter Gogarten

85. 
    Filling the gaps in the genomic landscape

    Article • Genome Biology, January 2010, Springer Science + Business Media

    Professor Johann Peter Gogarten

86. 
    Evolution of Genes and Organisms

    Article • Annals of the New York Academy of Sciences, October 2009, Wiley

    Professor Johann Peter Gogarten

87. 
    Horizontal gene transfer from extinct and extant lineages: biological innovation and the coral of life

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, August 2009, Royal Society Publishing

    Professor Johann Peter Gogarten

88. 
    On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales

    Article • Proceedings of the National Academy of Sciences, April 2009, Proceedings of the National Academy of Sciences

    Professor Johann Peter Gogarten

89. 
    Estimating the size of the bacterial pan-genome

    Article • Trends in Genetics, March 2009, Elsevier

    Professor Johann Peter Gogarten

90. 
    Horizontal Gene Transfer

    Article • January 2009

    Professor Johann Peter Gogarten

91. 
    Gene Transfer: Who Benefits?

    Article • January 2009, Springer Science + Business Media

    Professor Johann Peter Gogarten

92. 
    Ancient Gene Transfer as a Tool in Phylogenetic Reconstruction

    Article • January 2009, Springer Science + Business Media

    Professor Johann Peter Gogarten

93. 
    Trees in the Web of Life

    Article • Journal of Biology, January 2009, Springer Science + Business Media

    Professor Johann Peter Gogarten

94. 
    Insertion sequence content reflects genome plasticity in strains of the root nodule actinobacterium Frankia

    Article • BMC Genomics, January 2009, Springer Science + Business Media

    Professor Johann Peter Gogarten

95. 
    Prokaryotic evolution and the tree of life are two different things

    Article • Biology Direct, January 2009, Springer Science + Business Media

    Dr Yan Boucher, Professor Johann Peter Gogarten

96. 
    Conservation of intron and intein insertion sites: implications for life histories of parasitic genetic elements

    Article • BMC Evolutionary Biology, January 2009, Springer Science + Business Media

    Professor Johann Peter Gogarten

97. 
    Intertwined Evolutionary Histories of Marine Synechococcus and Prochlorococcus marinus

    Article • Genome Biology and Evolution, January 2009, Oxford University Press (OUP)

    Professor Johann Peter Gogarten

98. 
    Computational Methods for Understanding Bacterial and Archaeal Genomes

    Article • August 2008

    Professor Johann Peter Gogarten

99. 
    HORIZONTAL GENE TRANSFER: ITS DETECTION AND ROLE IN MICROBIAL EVOLUTION

    Article • August 2008, World Scientific Pub Co Pte Lt

    Professor Johann Peter Gogarten

100. 
     Orthologues, Paralogues and Xenologues in Human and Other Genomes

     Article • March 2008, Wiley

     Professor Johann Peter Gogarten

101. 
     Computational Methods for Understanding Bacterial and Archaeal Genomes

     Article • January 2008

     Professor Johann Peter Gogarten

102. 
     Concerted gene recruitment in early plant evolution

     Article • Genome Biology, January 2008, Springer Science + Business Media

     Professor Johann Peter Gogarten

103. 
     Evolution of mal ABC transporter operons in the Thermococcales and Thermotogales

     Article • BMC Evolutionary Biology, January 2008, Springer Science + Business Media

     Professor Johann Peter Gogarten

104. 
     Unsupervised Learning in Detection of Gene Transfer

     Article • Journal of Biomedicine and Biotechnology, January 2008, Hindawi Publishing Corporation

     Professor Johann Peter Gogarten

105. 
     Evolution of Acetoclastic Methanogenesis in Methanosarcina via Horizontal Gene Transfer from Cellulolytic Clostridia

     Article • Journal of Bacteriology, November 2007, ASM Journals

     Professor Johann Peter Gogarten

106. 
     Signature of a Primitive Genetic Code in Ancient Protein Lineages

     Article • Journal of Molecular Evolution, October 2007, Springer Science + Business Media

     Professor Johann Peter Gogarten

107. 
     Gene Transfer and the Reconstruction of Life’s Early History from Genomic Data

     Article • Space Science Reviews, October 2007, Springer Science + Business Media

     Professor Johann Peter Gogarten

108. 
     GPX: A Tool for the Exploration and Visualization of Genome Evolution

     Article • October 2007, Institute of Electrical & Electronics Engineers (IEEE)

     Professor Johann Peter Gogarten

109. 
     A hyperconserved protein in Prochlorococcus and marine Synechococcus

     Article • FEMS Microbiology Letters, September 2007, Oxford University Press (OUP)

     Professor Johann Peter Gogarten

110. 
     The Evolution of Eukaryotes

     Article • Science, April 2007, American Association for the Advancement of Science

     Professor Johann Peter Gogarten

111. 
     BranchClust: a phylogenetic algorithm for selecting gene families

     Article • BMC Bioinformatics, April 2007, Springer Science + Business Media

     Professor Johann Peter Gogarten

112. 
     Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?

     Article • Genome Biology, January 2007, Springer Science + Business Media

     Professor Johann Peter Gogarten

113. 
     The power of phylogenetic approaches to detect horizontally transferred genes

     Article • BMC Evolutionary Biology, January 2007, Springer Science + Business Media

     Professor Johann Peter Gogarten

114. 
     Unsupervised Learning in Spectral Genome Analysis

     Article • January 2007, Institute of Electrical & Electronics Engineers (IEEE)

     Professor Johann Peter Gogarten

115. 
     Structural stability and endonuclease activity of a PI-SceI GFP-fusion protein

     Article • International Journal of Biological Sciences, January 2007, Ivyspring International Publisher

     Professor Johann Peter Gogarten

116. 
     Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography

     Article • Genome Research, December 2006, Cold Spring Harbor Laboratory Press

     Professor Johann Peter Gogarten

117. 
     Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events

     Article • Genome Research, August 2006, Cold Spring Harbor Laboratory Press

     Professor Johann Peter Gogarten

118. 
     Orthologs, Paralogs and Xenologs in Human and Other Genomes

     Article • July 2006, Wiley

     Professor Johann Peter Gogarten

119. 
     Ancient horizontal gene transfer can benefit phylogenetic reconstruction

     Article • Trends in Genetics, July 2006, Elsevier

     Professor Johann Peter Gogarten

120. 
     Distribution of F- and A/V-type ATPases in Thermus scotoductus and other closely related species

     Article • Systematic and Applied Microbiology, January 2006, Elsevier

     Professor Johann Peter Gogarten

121. 
     Article • BMC Evolutionary Biology, January 2006, Springer Science + Business Media

     Professor Johann Peter Gogarten

122. 
     Ancient gene duplications and the root(s) of the tree of life

     Article • PROTOPLASMA, December 2005, Springer Science + Business Media

     Professor Johann Peter Gogarten

123. 
     Evolutionary and Diagnostic Implications of Intragenomic Heterogeneity in the 16S rRNA Gene in Aeromonas Strains

     Article • Journal of Bacteriology, September 2005, ASM Journals

     Professor Joerg Graf, Professor Johann Peter Gogarten

124. 
     Horizontal gene transfer, genome innovation and evolution

     Article • Nature Reviews Microbiology, August 2005, Springer Science + Business Media

     Jeffrey Townsend, Professor Johann Peter Gogarten

125. 
     The Presence of a Haloarchaeal Type Tyrosyl-tRNA Synthetase Marks the Opisthokonts as Monophyletic

     Article • Molecular Biology and Evolution, July 2005, Oxford University Press (OUP)

     Professor Johann Peter Gogarten

126. 
     Cladistics: A Practical Primer on CD-ROM. By Peter Skelton and Andrew Smith, with accompanying booklet by NealeMonks. Cambridge University Press, 40 West 20th Street, New York, NY 10011-4211, ISBN: 0-521-52341-9, Price $55.00

     Article • Origins of Life and Evolution of Biospheres, February 2005, Springer Science + Business Media

     Professor Johann Peter Gogarten

127. 
     Were arachnids the first to use combinatorial peptide libraries?

     Article • Peptides, January 2005, Elsevier

     Professor Johann Peter Gogarten

128. 
     Article • BMC Bioinformatics, January 2005, Springer Science + Business Media

     Professor Johann Peter Gogarten

129. 
     Erratum: Cladogenesis, coalescence and the evolution of the three domains of life

     Article • Trends in Genetics, July 2004, Elsevier

     Professor Johann Peter Gogarten

130. 
     Genome mosaicism and organismal lineages

     Article • Trends in Genetics, May 2004, Elsevier

     Professor Johann Peter Gogarten

131. 
     Cladogenesis, coalescence and the evolution of the three domains of life

     Article • Trends in Genetics, April 2004, Elsevier

     Professor Johann Peter Gogarten

132. 
     Article • BMC Bioinformatics, January 2004, Springer Science + Business Media

     Professor Johann Peter Gogarten

133. 
     Article • Genome Biology, January 2004, Springer Science + Business Media

     Professor Johann Peter Gogarten

134. 
     Spliceosomal Introns: New Insights into their Evolution

     Article • Current Biology, September 2003, Elsevier

     Professor Johann Peter Gogarten

135. 
     Evolution of photosynthetic prokaryotes: a maximum-likelihood mapping approach

     Article • Philosophical Transactions of the Royal Society B Biological Sciences, January 2003, Royal Society Publishing

     Professor Johann Peter Gogarten

136. 
     Article • BMC Genomics, January 2003, Springer Science + Business Media

     Professor Johann Peter Gogarten

137. 
     Gene Transfer: Gene Swapping Craze Reaches Eukaryotes

     Article • Current Biology, January 2003, Elsevier

     Professor Johann Peter Gogarten

138. 
     Prokaryotic Evolution in Light of Gene Transfer

     Article • Molecular Biology and Evolution, December 2002, Oxford University Press (OUP)

     Professor Johann Peter Gogarten

139. 
     Whole-Genome Analysis of Photosynthetic Prokaryotes

     Article • Science, November 2002, American Association for the Advancement of Science

     Professor Johann Peter Gogarten

140. 
     Inteins: Structure, Function, and Evolution

     Article • Annual Review of Microbiology, October 2002, Annual Reviews

     Professor Johann Peter Gogarten

141. 
     Progenote

     Article • January 2002, Wiley

     Professor Johann Peter Gogarten

142. 
     Horizontal Gene Transfer

     Article • January 2002, Elsevier

     Professor Johann Peter Gogarten

143. 
     Article • BMC Genomics, January 2002, Springer Science + Business Media

     Professor Johann Peter Gogarten

144. 
     Article • BMC Plant Biology, January 2002, Springer Science + Business Media

     Professor Johann Peter Gogarten

145. 
     Article • BMC Biochemistry, January 2001, Springer Science + Business Media

     Professor Prabhakara Choudary, Professor Johann Peter Gogarten

146. 
     Comparing trees in a phylogenetic relationship repository

     Article • January 2001, Institute of Electrical & Electronics Engineers (IEEE)

     Professor Johann Peter Gogarten

147. 
     Article • BMC Biochemistry, January 2001, Springer Science + Business Media

     Professor Johann Peter Gogarten

148. 
     Horizontal Transfer of Archaeal Genes into the Deinococcaceae: Detection by Molecular and Computer-Based Approaches

     Article • Journal of Molecular Evolution, December 2000, Springer Science + Business Media

     Professor Johann Peter Gogarten

149. 
     Orthologs, paralogs and genome comparisons

     Article • Current Opinion in Genetics & Development, December 1999, Elsevier

     Professor Johann Peter Gogarten

150. 
     Horizontal Gene Transfer: Pitfalls and Promises

     Article • Biological Bulletin, June 1999, JSTOR

     Professor Johann Peter Gogarten

151. 
     Gene Transfer in Early Evolution

     Article • January 1999, Springer Science + Business Media

     Professor Johann Peter Gogarten

152. 
     The Prokaryote-to-Eukaryote Transition Reflected in the Evolution of the V/F/A-ATPase Catalytic and Proteolipid Subunits

     Article • Journal of Molecular Evolution, June 1998, Springer Science + Business Media

     Professor Johann Peter Gogarten

153. 
     cDNA cloning of a mandibular organ inhibiting hormone from the spider crabLibinia emarginata

     Article • Invertebrate Neuroscience, September 1997, Springer Science + Business Media

     Professor Johann Peter Gogarten

154. 
     Dating the Cenancester of Organisms

     Article • Science, December 1996, American Association for the Advancement of Science

     Professor Johann Peter Gogarten

155. 
     Dating the Cenancester of Organisms

     Article • Science, December 1996, American Association for the Advancement of Science

     Professor Johann Peter Gogarten

156. 
     Gene duplications and horizontal gene transfer during early evolution

     Article • Origins of Life and Evolution of Biospheres, October 1996, Springer Science + Business Media

     Professor Johann Peter Gogarten

157. 
     The V-ATPase A subunit gene (vma-1 from Giardia lamblia

     Article • Biochimica et Biophysica Acta (BBA) - Biomembranes, August 1995, Elsevier

     Professor Johann Peter Gogarten

158. 
     The effects of heavy meteorite bombardment on the early evolution — The emergence of the three Domains of life

     Article • Origins of Life and Evolution of Biospheres, June 1995, Springer Science + Business Media

     Professor Johann Peter Gogarten

159. 
     The early evolution of cellular life

     Article • Trends in Ecology & Evolution, April 1995, Elsevier

     Professor Johann Peter Gogarten

160. 
     A Second Cell Wall Acid Invertase Gene in Arabidopsis thaliana

     Article • Plant Physiology, February 1995, American Society of Plant Biologists (ASPB)

     Professor Johann Peter Gogarten

161. 
     Which is the most conserved group of proteins? Homology-orthology, paralogy, xenology, and the fusion of independent lineages

     Article • Journal of Molecular Evolution, November 1994, Springer Science + Business Media

     Professor Johann Peter Gogarten

162. 
     Letter to the editor

     Article • Plant Molecular Biology, October 1993, Springer Science + Business Media

     Professor Johann Peter Gogarten

163. 
     A conserved intron in the V-ATPase A subunit genes of plants and algae

     Article • FEBS Letters, January 1993, Wiley

     Professor Johann Peter Gogarten

164. 
     Horizontal transfer of ATPase genes — the tree of life becomes a net of life

     Article • Biosystems, January 1993, Elsevier

     Professor Johann Peter Gogarten

165. 
     Evolution of proton pumping ATPases: Rooting the tree of life

     Article • Photosynthesis Research, August 1992, Springer Science + Business Media

     Professor Johann Peter Gogarten

166. 
     Evolution of structure and function of V-ATPases

     Article • Journal of Bioenergetics and Biomembranes, August 1992, Springer Science + Business Media

     Professor Johann Peter Gogarten

167. 
     The Use of Antisense mRNA to Inhibit the Tonoplast H+ ATPase in Carrot

     Article • The Plant Cell, July 1992, American Society of Plant Biologists (ASPB)

     Professor Johann Peter Gogarten

168. 
     Tracing origins with molecular sequences: rooting the universal tree of life

     Article • Trends in Biochemical Sciences, January 1991, Elsevier

     Professor Johann Peter Gogarten

169. 
     Evolution of the vacuolar H+-ATPase: implications for the origin of eukaryotes.

     Article • Proceedings of the National Academy of Sciences, September 1989, Proceedings of the National Academy of Sciences

     Professor Johann Peter Gogarten

170. 
     The H+ ATPase regulatory subunit of Methanococcus thermolithotrophicus : Amplification of an 800 bp fragment by polymerase chain reaction

     Article • FEBS Letters, July 1989, Wiley

     Professor Johann Peter Gogarten

171. 
     Substrate specifity of the hexose carrier in the plasmalemma of Chenopodium suspension cells probed by transmembrane exchange diffusion

     Article • Planta, January 1989, Springer Science + Business Media

     Professor Johann Peter Gogarten

172. 
     The electrogenic proton/hexose carrier in the plasmalemma of Chenopodium rubrum suspension cells: effects of Δc, ΔpH and Δψ on hexose exchange diffusion

     Article • Biochimica et Biophysica Acta (BBA) - Biomembranes, January 1989, Elsevier

     Professor Johann Peter Gogarten

173. 
     Sugar nucleotides dissipate ATP-generated transmembrane pH gradient in Golgi vesicles from suspension-cell protoplasts ofChenopodium rubrum L.

     Article • Planta, June 1988, Springer Science + Business Media

     Professor Johann Peter Gogarten

174. 
     Physical properties of the cell wall of photoautotrophic suspension cells fromChenopodium rubrum L.

     Article • Planta, June 1988, Springer Science + Business Media

     Professor Johann Peter Gogarten

175. 
     ATP-dependent acidification and tonoplast hyperpolarization in isolated vacuoles from green suspension cells of Chenopodium rubrum L

     Article • Proceedings of the National Academy of Sciences, April 1986, Proceedings of the National Academy of Sciences

     Professor Johann Peter Gogarten

176. 
     Lateral electrophoresis versus 2D-diffusion

     Article • Trends in Biochemical Sciences, December 1985, Elsevier

     Professor Johann Peter Gogarten

177. 
     A Patch Clamp Study of Tonoplast Electrical Properties in Vacuoles Isolated from Chenopodium rubrum Suspension Cells

     Article • Zeitschrift für Naturforschung C, October 1985, De Gruyter

     Professor Johann Peter Gogarten

178. 
     Kinetics and Specificity of ATP-dependent Proton Translocation Measured with Acridine Orange in Microsomal Fractions from Green Suspension Cells of Chenopodium rubrum L.

     Article • Journal of Plant Physiology, March 1985, Elsevier

     Professor Johann Peter Gogarten

179. 
     Phlorizin inhibits hexose transport across the plasmalemma of Riccia fluitans

     Article • Planta, April 1983, Springer Science + Business Media

     Professor Johann Peter Gogarten

180. 
     Fluxes and compartmentation of 3-O-methyl-D-glucose in Riccia fluitans

     Article • Planta, January 1983, Springer Science + Business Media

     Professor Johann Peter Gogarten

181. 
     What’s in a Tree?

     Article • Springer Science + Business Media

     Professor Johann Peter Gogarten

182. 
     Horizontal gene transfer, gene histories, and the root of the tree of life

     Article • Cambridge University Press

     Professor Johann Peter Gogarten

183. 
     Gene Transfer and the Reconstruction of Life’s Early History from Genomic Data

     Article • Springer Science + Business Media

     Professor Johann Peter Gogarten

184. 
     II.11. Evolution in the Prokaryotic Grade

     Article • De Gruyter

     Professor Johann Peter Gogarten