All Stories

  1. A comparative mutation–selection reanalysis of colon and rectal adenocarcinoma highlights PIK3CA variants and BRAF V600E

    Article • Journal of Translational Medicine, August 2026, Springer Science + Business Media

    Jeffrey Townsend

  2. Stepwise Evolution and Epistatic Interaction of Driver Mutations from Endometrial Hyperplasia to Carcinoma

    Article • June 2026, openRxiv

    Jeffrey Townsend

  3. Signal, noise, and bias in phylogenetic inference: potential and limits to the resolution of phylogenetic trees in the phylogenomic era

    Article • April 2026, openRxiv

    Jeffrey Townsend

  4. Data from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  5. Figure S1 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  6. Figure S10 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  7. Figure S11 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  8. Figure S12 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  9. Figure S13 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  10. Figure S14 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  11. Figure S15 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  12. Figure S16 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  13. Figure S2 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  14. Figure S3 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  15. Figure S4 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  16. Figure S5 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  17. Figure S6 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  18. Figure S7 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  19. Figure S8 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  20. Figure S9 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  21. Table S1 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  22. Table S2 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  23. Table S3 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  24. Table S4 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  25. Table S5 from Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • March 2026, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  26. Germline Predisposition to Oncogenic Alkylating Damage in Colorectal Cancer

    Article • Cancer Epidemiology Biomarkers & Prevention, December 2025, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  27. Figure S1 from Estimation of Neutral Mutation Rates and Quantification of Somatic Variant Selection Using cancereffectsizeR

    Article • November 2025, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  28. KRAS G12C-associated immunotherapy benefit in NSCLC is substantially mediated by tobacco-induced tumor mutation burden, not allele-specific effects

    Article • Lung Cancer, November 2025, Elsevier

    Jeffrey Townsend

  29. Deconvolving mutation and selection reveals stage-specific drivers of thyroid cancer

    Article • October 2025, openRxiv

    Jeffrey Townsend

  30. Germline predisposition to oncogenic alkylating damage in colorectal cancer

    Article • July 2025, openRxiv

    Jeffrey Townsend

  31. Rates of Evolution of Developmental Changes in Gene Expression in Sordariomycetes

    Article • Molecular Biology and Evolution, June 2025, Oxford University Press (OUP)

    Jeffrey Townsend

  32. Precision projections of the delay of resistance mutations in non-small cell lung cancer via suppression of APOBEC

    Article • Lung Cancer, April 2025, Elsevier

    Jeffrey Townsend

  33. Comparative transcriptional analysis reveals gene expression changes in spore germination of opportunistic pathogenic fungi

    Article • February 2025, openRxiv

    Jeffrey Townsend

  34. Entrenchment and contingency in neutral protein evolution with epistasis

    Article • January 2025, openRxiv

    Jeffrey Townsend

  35. Transcription factor-dependent regulatory networks of sexual reproduction in Fusarium graminearum

    Article • mBio, January 2025, ASM Journals

    Jeffrey Townsend

  36. Tobacco smoke alters the trajectory of lung adenocarcinoma evolution via effects on somatic selection and epistasis

    Article • December 2024, openRxiv

    Jeffrey Townsend

  37. Optimal Annual COVID-19 Vaccine Boosting Dates Following Previous Booster Vaccination or Breakthrough Infection

    Article • Clinical Infectious Diseases, November 2024, Oxford University Press (OUP)

    Jeffrey Townsend

  38. COVID-19 prevention with alternate vaccine boosting frequencies for multiple-sclerosis patients undergoing therapy with beta-interferon, dimethyl fumarate, natalizumab, or teriflunomide

    Article • September 2024, openRxiv

    Jeffrey Townsend

  39. Sufficient COVID-19 quarantine and testing on international travelers to forestall cross-border transmission after China's removal of the zero-COVID policy in early 2023

    Article • International Journal of Infectious Diseases, August 2024, Elsevier

    Jeffrey Townsend

  40. Optimal annual COVID-19 vaccine boosting dates following previous booster vaccination or breakthrough infection

    Article • July 2024, openRxiv

    Jeffrey Townsend

  41. Rare Drivers at Low Prevalence with High Cancer Effects in T-Cell and B-Cell Pediatric Acute Lymphoblastic Leukemia

    Article • International Journal of Molecular Sciences, June 2024, MDPI AG

    Jeffrey Townsend

  42. Seasonality of endemic COVID-19

    Article • mBio, December 2023, ASM Journals

    Jeffrey Townsend

  43. Pairwise and higher-order epistatic effects among somatic cancer mutations across oncogenesis

    Article • Mathematical Biosciences, December 2023, Elsevier

    Jeffrey Townsend

  44. Early NOTCH1 mutation is positively selected but epistatically suppresses evolution of later esophageal squamous-cell carcinoma drivers

    Article • November 2023, openRxiv

    Jeffrey Townsend

  45. Sufficient COVID-19 quarantine and testing on international travelers from China

    Article • November 2023, openRxiv

    Jeffrey Townsend

  46. Origins of lineage‐specific elements via gene duplication, relocation, and regional rearrangement in Neurospora crassa

    Article • Molecular Ecology, October 2023, Wiley

    Jeffrey Townsend

  47. Infection with alternate frequencies of SARS-CoV-2 vaccine boosting for patients undergoing antineoplastic cancer treatments

    Article • JNCI Journal of the National Cancer Institute, August 2023, Oxford University Press (OUP)

    Jeffrey Townsend

  48. Purifying selection and adaptive evolution proximate to the zoonosis of SARS-CoV-1 and SARS-CoV-2

    Article • August 2023, openRxiv

    Jeffrey Townsend

  49. Tracing the evolution of single-cell cancer 3D genomes: an atlas for cancer gene discovery

    Article • July 2023, openRxiv

    Jeffrey Townsend

  50. Origins of lineage-specific elements via gene duplication, relocation, and regional rearrangement in Neurospora crassa

    Article • July 2023, Wiley

    Jeffrey Townsend

  51. Infection by SARS-CoV-2 with alternate frequencies of mRNA vaccine boosting for patients undergoing antineoplastic treatment for cancer

    Article • May 2023, openRxiv

    Jeffrey Townsend

  52. The “evol” is in the details: a rummage-region model for the origins of lineage-specific elements via gene duplication, relocation, and regional rearrangement in Neurospora crassa

    Article • April 2023, Wiley

    Jeffrey Townsend

  53. Data from Estimation of Neutral Mutation Rates and Quantification of Somatic Variant Selection Using cancereffectsizeR

    Article • March 2023, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  54. Data from Estimation of Neutral Mutation Rates and Quantification of Somatic Variant Selection Using cancereffectsizeR

    Article • March 2023, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  55. Figure S1 from Estimation of Neutral Mutation Rates and Quantification of Somatic Variant Selection Using cancereffectsizeR

    Article • March 2023, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  56. Figure S1 from Estimation of Neutral Mutation Rates and Quantification of Somatic Variant Selection Using cancereffectsizeR

    Article • March 2023, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  57. Infection by SARS‐CoV‐2 with alternate frequencies of mRNA vaccine boosting

    Article • Journal of Medical Virology, January 2023, Wiley

    Jeffrey Townsend

  58. Jot: guiding journal selection with suitability metrics

    Article • Journal of the Medical Library Association JMLA, December 2022, University Library System, University of Pittsburgh

    Jeffrey Townsend

  59. Estimation of Neutral Mutation Rates and Quantification of Somatic Variant Selection Using cancereffectsizeR

    Article • Cancer Research, December 2022, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  60. In Response to “De Novo KRAS G12C-Mutant SCLC: A Case Report”

    Article • JTO Clinical and Research Reports, December 2022, Elsevier

    Jeffrey Townsend

  61. Not only mutations but also tumorigenesis can be substantially attributed to DNA damage from reactive oxygen species in RUNX1::RUNX1T1-fusion-positive acute myeloid leukemia

    Article • Leukemia, November 2022, Springer Science + Business Media

    Jeffrey Townsend

  62. The durability of natural infection and vaccine-induced immunity against future infection by SARS-CoV-2

    Article • Proceedings of the National Academy of Sciences, July 2022, Proceedings of the National Academy of Sciences

    Jeffrey Townsend

  63. Transcriptional Divergence Underpinning Sexual Development in the Fungal Class Sordariomycetes

    Article • mBio, June 2022, ASM Journals

    Jeffrey Townsend

  64. Attribution of Cancer Origins to Endogenous, Exogenous, and Preventable Mutational Processes

    Article • Molecular Biology and Evolution, April 2022, Oxford University Press (OUP)

    Jeffrey Townsend

  65. Cancer Relevance of Human Genes

    Article • JNCI Journal of the National Cancer Institute, April 2022, Oxford University Press (OUP)

    Jeffrey Townsend

  66. Heavy mutagenesis by tobacco leads to lung adenocarcinoma tumors with KRAS G12 mutations other than G12D, leading KRAS G12D tumors—on average—to exhibit a lower mutation burden

    Article • Lung Cancer, April 2022, Elsevier

    Jeffrey Townsend

  67. Quarantine and testing strategies to ameliorate transmission due to travel during the COVID-19 pandemic: a modelling study

    Article • The Lancet Regional Health - Europe, March 2022, Elsevier

    Jeffrey Townsend

  68. Sequencing and Analysis of the Entire Genome of the Mycoparasitic Bioeffector Fungus Trichoderma asperelloides Strain T 203 (Hypocreales)

    Article • Microbiology Resource Announcements, February 2022, ASM Journals

    Jeffrey Townsend

  69. Premetastatic shifts of endogenous and exogenous mutational processes support consolidative therapy in EGFR-driven lung adenocarcinoma

    Article • Cancer Letters, February 2022, Elsevier

    Jeffrey Townsend

  70. Projecting the seasonality of endemic COVID-19

    Article • January 2022, openRxiv

    Jeffrey Townsend

  71. Pairwise and higher-order epistatic effects among somatic cancer mutations across oncogenesis

    Article • January 2022, openRxiv

    Jeffrey Townsend

  72. The Prognostic Value of an RT-PCR Test for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Is Contingent on Timing across Disease Time Course in addition to Assay Sensitivity

    Article • Journal of Molecular Diagnostics, January 2022, Elsevier

    Jeffrey Townsend

  73. The durability of immunity against reinfection by SARS-CoV-2: a comparative evolutionary study

    Article • The Lancet Microbe, December 2021, Elsevier

    Jeffrey Townsend

  74. The somatic molecular evolution of cancer: Mutation, selection, and epistasis

    Article • Progress in Biophysics and Molecular Biology, October 2021, Elsevier

    Jeffrey Townsend

  75. Comparative analyses of FDA EUA-approved rapid antigen tests and RT-PCR for COVID-19 quarantine and surveillance-based isolation

    Article • August 2021, openRxiv

    Jeffrey Townsend

  76. Mechanistic basis of post-treatment control of SIV after anti-α4β7 antibody therapy

    Article • PLoS Computational Biology, June 2021, PLOS

    Jeffrey Townsend

  77. Environmental and sex-specific molecular signatures of glioma causation

    Article • Neuro-Oncology, May 2021, Oxford University Press (OUP)

    Jeffrey Townsend

  78. Clinically relevant shifts in endogenous and exogenous mutational processes proximate to metastasis support local consolidative treatment in EGFR-driven non-small cell lung cancer

    Article • May 2021, openRxiv

    Jeffrey Townsend

  79. Quarantine and testing strategies to ameliorate transmission due to travel during the COVID-19 pandemic: a modelling study

    Article • April 2021, openRxiv

    Jeffrey Townsend

  80. Identifying modules of cooperating cancer drivers

    Article • Molecular Systems Biology, March 2021, Springer Science + Business Media

    Jeffrey Townsend

  81. Cancer relevance of human genes

    Article • February 2021, openRxiv

    Jeffrey Townsend

  82. Optimal COVID-19 quarantine and testing strategies

    Article • Nature Communications, January 2021, Springer Science + Business Media

    Jeffrey Townsend

  83. Chemsearch: collaborative compound libraries with structure-aware browsing

    Article • Bioinformatics Advances, January 2021, Oxford University Press (OUP)

    Jeffrey Townsend

  84. Comparative Genomics within and across Bilaterians Illuminates the Evolutionary History of ALK and LTK Proto-Oncogene Origination and Diversification

    Article • Genome Biology and Evolution, November 2020, Oxford University Press (OUP)

    Jeffrey Townsend

  85. Optimal COVID-19 quarantine and testing strategies

    Article • October 2020, openRxiv

    Jeffrey Townsend

  86. Attribution of Cancer Origins to Endogenous, Exogenous, and Actionable Mutational Processes

    Article • October 2020, openRxiv

    Jeffrey Townsend

  87. Identifying Modules of Cooperating Cancer Drivers

    Article • June 2020, openRxiv

    Jeffrey Townsend

  88. Non-Coding Mutations in Urothelial Bladder Cancer: Biological and Clinical Relevance and Potential Utility as Biomarkers

    Article • Bladder Cancer, June 2020, IOS Press

    Jeffrey Townsend

  89. Dogs and pigs are transport hosts of Necator americanus: Molecular evidence for a zoonotic mechanism of human hookworm transmission in Ghana

    Article • Zoonoses and Public Health, June 2020, Wiley

    Jeffrey Townsend

  90. Germline variant burden in cancer genes correlates with age at diagnosis and somatic mutation burden

    Article • Nature Communications, May 2020, Springer Science + Business Media

    Jeffrey Townsend

  91. Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi

    Article • Molecular Biology and Evolution, March 2020, Oxford University Press (OUP)

    Jeffrey Townsend

  92. Transfer RNA methyltransferase gene NSUN2 mRNA expression modifies the effect of T cell activation score on patient survival in head and neck squamous carcinoma

    Article • Oral Oncology, February 2020, Elsevier

    Jeffrey Townsend

  93. Re: Ming-Jun Shi, Xiang-Yu Meng, Philippe Lamy, et al. APOBEC-mediated Mutagenesis as a Likely Cause of FGFR3 S249C Mutation Over-representation in Bladder Cancer. Eur Urol 2019;76:9–13

    Article • European Urology, January 2020, Elsevier

    Jeffrey Townsend

  94. Integrative Activity of Mating Loci, Environmentally Responsive Genes, and Secondary Metabolism Pathways during Sexual Development of Chaetomium globosum

    Article • mBio, December 2019, ASM Journals

    Jeffrey Townsend

  95. Molecular Biology and Evolution of Cancer: From Discovery to Action

    Article • Molecular Biology and Evolution, October 2019, Oxford University Press (OUP)

    Jeffrey Townsend

  96. Evolutionary analyses guide selection of model systems to investigate proto-oncogene function in ALK and LTK

    Article • October 2019, openRxiv

    Jeffrey Townsend

  97. Modelling microbial infection to address global health challenges

    Article • Nature Microbiology, September 2019, Springer Science + Business Media

    Jeffrey Townsend

  98. The landscape of novel and complementary targets for immunotherapy: an analysis of gene expression in the tumor microenvironment

    Article • Oncotarget, July 2019, Impact Journals, LLC

    Jeffrey Townsend

  99. GEM-NET: Lessons in Multi-Institution Teamwork Using Collaboration Software

    Article • ACS Central Science, July 2019, American Chemical Society (ACS)

    Jeffrey Townsend

  100. Identifying Combinations of Cancer Drivers in Individual Patients

    Article • June 2019, openRxiv

    Jeffrey Townsend

  101. A multigene phylogeny toward a new phylogenetic classification of Leotiomycetes

    Article • IMA Fungus, June 2019, Pensoft Publishers

    Jeffrey Townsend

  102. Comparative Genomics and Transcriptomics During Sexual Development Gives Insight Into the Life History of the Cosmopolitan Fungus Fusarium neocosmosporiellum

    Article • Frontiers in Microbiology, June 2019, Frontiers

    Jeffrey Townsend

  103. Combined Aurora Kinase A (AURKA) and WEE1 Inhibition Demonstrates Synergistic Antitumor Effect in Squamous Cell Carcinoma of the Head and Neck

    Article • Clinical Cancer Research, June 2019, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  104. Implementation of Syringe Services Programs to Prevent Rapid Human Immunodeficiency Virus Transmission in Rural Counties in the United States: A Modeling Study

    Article • Clinical Infectious Diseases, May 2019, Oxford University Press (OUP)

    Jeffrey Townsend

  105. Metabolism and Development during Conidial Germination in Response to a Carbon-Nitrogen-Rich Synthetic or a Natural Source of Nutrition in Neurospora crassa

    Article • mBio, April 2019, ASM Journals

    Jeffrey Townsend

  106. Unmatched level of molecular convergence among deeply divergent complex multicellular fungi

    Article • February 2019, openRxiv

    Jeffrey Townsend

  107. Wagging the long tail of drivers of prostate cancer

    Article • PLoS Genetics, January 2019, PLOS

    Jeffrey Townsend

  108. APOBEC-induced mutations and their cancer effect size in head and neck squamous cell carcinoma

    Article • Oncogene, January 2019, Springer Science + Business Media

    Jeffrey Townsend

  109. Modeling Approaches Toward Understanding Infectious Disease Transmission

    Article • January 2019, Springer Science + Business Media

    Jeffrey Townsend

  110. Effect Sizes of Somatic Mutations in Cancer

    Article • JNCI Journal of the National Cancer Institute, October 2018, Oxford University Press (OUP)

    Jeffrey Townsend

  111. The critical importance of retention in HIV prevention

    Article • The Lancet HIV, September 2018, Elsevier

    Jeffrey Townsend

  112. Using evolutionary genomics, transcriptomics, and systems biology to reveal gene networks underlying fungal development

    Article • Fungal Biology Reviews, September 2018, Elsevier

    Jeffrey Townsend

  113. Potential effectiveness of long-acting injectable pre-exposure prophylaxis for HIV prevention in men who have sex with men: a modelling study

    Article • The Lancet HIV, September 2018, Elsevier

    Jeffrey Townsend

  114. Developmental Dynamics of Long Noncoding RNA Expression during Sexual Fruiting Body Formation in Fusarium graminearum

    Article • mBio, August 2018, ASM Journals

    Jeffrey Townsend

  115. Optimal Rates for Phylogenetic Inference and Experimental Design in the Era of Genome-Scale Data Sets

    Article • Systematic Biology, June 2018, Oxford University Press (OUP)

    Jeffrey Townsend

  116. Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel

    Article • Frontiers in Cellular and Infection Microbiology, June 2018, Frontiers

    Jeffrey Townsend

  117. Neutral Theory and the Somatic Evolution of Cancer

    Article • Molecular Biology and Evolution, May 2018, Oxford University Press (OUP)

    Jeffrey Townsend

  118. Analysis of mutation, selection, and epistasis: an informed approach to cancer clinical trials

    Article • Oncotarget, April 2018, Impact Journals, LLC

    Jeffrey Townsend

  119. Neutral Theory and the Somatic Evolution of Cancer

    Article • Molecular Biology and Evolution, April 2018, Oxford University Press (OUP)

    Jeffrey Townsend

  120. CDKN2A Copy Number Loss Is an Independent Prognostic Factor in HPV-Negative Head and Neck Squamous Cell Carcinoma

    Article • Frontiers in Oncology, April 2018, Frontiers

    Jeffrey Townsend

  121. The Cancer Tree

    Article • Scientific American A Matter of Time, April 2018, Springer Science + Business Media

    Jeffrey Townsend

  122. Primary hepatic neuroendocrine carcinoma: report of two cases and literature review

    Article • BMC Clinical Pathology, March 2018, Springer Science + Business Media

    Jeffrey Townsend

  123. Lvr, a Signaling System That Controls Global Gene Regulation and Virulence in Pathogenic Leptospira

    Article • Frontiers in Cellular and Infection Microbiology, February 2018, Frontiers

    Jeffrey Townsend

  124. Sexual stage-induced long noncoding RNAs in the filamentous fungus Fusarium graminearum

    Article • February 2018, openRxiv

    Jeffrey Townsend

  125. Heterogeneity and mutation in KRAS and associated oncogenes: evaluating the potential for the evolution of resistance to targeting of KRAS G12C

    Article • Oncogene, February 2018, Springer Science + Business Media

    Jeffrey Townsend

  126. Somatic evolutionary timings of driver mutations

    Article • BMC Cancer, January 2018, Springer Science + Business Media

    Jeffrey Townsend

  127. how fungi may sense light and oxygen and adjust their behaviors

    Article • Molecular Ecology, December 2017, Wiley

    Zheng Wang, Jeffrey Townsend

  128. Effect sizes of somatic mutations in cancer

    Article • December 2017, openRxiv

    Jeffrey Townsend

  129. The Moran coalescent in a discrete one-dimensional spatial model

    Article • September 2017, openRxiv

    Jeffrey Townsend

  130. Distributions of Mutational Effects and the Estimation of Directional Selection in Divergent Lineages ofArabidopsis thaliana

    Article • Genetics, August 2017, Oxford University Press (OUP)

    Jeffrey Townsend

  131. Detection of Regional Variation in Selection Intensity within Protein-Coding Genes Using DNA Sequence Polymorphism and Divergence

    Article • Molecular Biology and Evolution, July 2017, Oxford University Press (OUP)

    Jeffrey Townsend

  132. The ancestral levels of transcription and the evolution of sexual phenotypes in filamentous fungi

    Article • PLoS Genetics, July 2017, PLOS

    Jeffrey Townsend

  133. The likelihood of heterogeneity or additional mutation in KRAS or associated oncogenes to compromise targeting of oncogenic KRAS G12C

    Article • June 2017, openRxiv

    Jeffrey Townsend

  134. New insights on the sister lineage of percomorph fishes with an anchored hybrid enrichment dataset

    Article • Molecular Phylogenetics and Evolution, May 2017, Elsevier

    Jeffrey Townsend

  135. Radiation-Specific Clinical Data Should Be Included in Existing Large-Scale Genomic Datasets

    Article • International Journal of Radiation Oncology*Biology*Physics, May 2017, Elsevier

    Jeffrey Townsend

  136. PhyloOncology: Understanding cancer through phylogenetic analysis

    Article • Biochimica et Biophysica Acta (BBA) - Reviews on Cancer, April 2017, Elsevier

    Jeffrey Townsend

  137. Oncogenes without a neighboring tumor-suppressor gene are more prone to amplification

    Article • Molecular Biology and Evolution, January 2017, Oxford University Press (OUP)

    Jeffrey Townsend

  138. A working model of the deep relationships of diverse modern human genetic lineages outside of Africa

    Article • Molecular Biology and Evolution, January 2017, Oxford University Press (OUP)

    Jeffrey Townsend

  139. Mutation profiles in early-stage lung squamous cell carcinoma with clinical follow-up and correlation with markers of immune function

    Article • Annals of Oncology, January 2017, Elsevier

    Jeffrey Townsend

  140. Whole-exome sequencing and immune profiling of early-stage lung adenocarcinoma with fully annotated clinical follow-up

    Article • Annals of Oncology, January 2017, Elsevier

    Jeffrey Townsend

  141. Maximizing Power in Phylogenetics and Phylogenomics: A Perspective Illuminated by Fungal Big Data

    Article • January 2017, Elsevier

    Jeffrey Townsend

  142. Preface

    Article • January 2017, Elsevier

    Jeffrey Townsend

  143. One Health approach to cost-effective rabies control in India

    Article • Proceedings of the National Academy of Sciences, December 2016, Proceedings of the National Academy of Sciences

    Dr Syed S Abbas, Jeffrey Townsend

  144. PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R

    Article • BMC Evolutionary Biology, December 2016, Springer Science + Business Media

    Jeffrey Townsend

  145. Vaccination strategies against respiratory syncytial virus

    Article • Proceedings of the National Academy of Sciences, October 2016, Proceedings of the National Academy of Sciences

    Jeffrey Townsend

  146. Climatic and evolutionary drivers of phase shifts in the plague epidemics of colonial India

    Article • Proceedings of the National Academy of Sciences, October 2016, Proceedings of the National Academy of Sciences

    Jeffrey Townsend

  147. PathScore: a web tool for identifying altered pathways in cancer data

    Article • Bioinformatics, August 2016, Oxford University Press (OUP)

    Jeffrey Townsend

  148. PathScore: a web tool for identifying altered pathways in cancer data

    Article • August 2016, openRxiv

    Jeffrey Townsend

  149. Cost-effectiveness of next-generation vaccines: The case of pertussis

    Article • Vaccine, June 2016, Elsevier

    Jeffrey Townsend

  150. A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

    Article • Nature, June 2016, Springer Science + Business Media

    Jeffrey Townsend

  151. Cost-Effectiveness of Pertussis Vaccination During Pregnancy in the United States

    Article • American Journal of Epidemiology, May 2016, Oxford University Press (OUP)

    Jeffrey Townsend

  152. Retrospective Analysis of the 2014–2015 Ebola Epidemic in Liberia

    Article • American Journal of Tropical Medicine and Hygiene, April 2016, American Society of Tropical Medicine and Hygiene

    Jeffrey Townsend

  153. A traffic light for fungal sex

    Article • mBio, March 2016, ASM Journals

    Jeffrey Townsend

  154. Determinants of Human African Trypanosomiasis Elimination via Paratransgenesis

    Article • PLoS Neglected Tropical Diseases, March 2016, PLOS

    Jeffrey Townsend

  155. Early and multiple origins of metastatic lineages within primary tumors

    Article • Proceedings of the National Academy of Sciences, February 2016, Proceedings of the National Academy of Sciences

    Jeffrey Townsend

  156. Optimizing age of cytomegalovirus screening and vaccination to avert congenital disease in the US

    Article • Vaccine, January 2016, Elsevier

    Jeffrey Townsend

  157. Quantitative analyses and modelling to support achievement of the 2020 goals for nine neglected tropical diseases

    Article • Parasites & Vectors, December 2015, Springer Science + Business Media

    Professor Deirdre Hollingsworth, Lloyd Chapman, Professor Maria-Gloria Basáñez, Jeffrey Townsend

  158. The Impact of Enhanced Screening and Treatment on Hepatitis C in the United States

    Article • Clinical Infectious Diseases, November 2015, Oxford University Press (OUP)

    Jeffrey Townsend

  159. Impact of bed capacity on spatiotemporal shifts in Ebola transmission

    Article • Proceedings of the National Academy of Sciences, October 2015, Proceedings of the National Academy of Sciences

    Jeffrey Townsend

  160. Inferring the Origin of Metastases from Cancer Phylogenies

    Article • Cancer Research, September 2015, American Association for Cancer Research (AACR)

    Jeffrey Townsend

  161. Genomic and gene-expression comparisons among phage-resistant type-IV pilus mutants of Pseudomonas syringae pathovar phaseolicola

    Article • August 2015, openRxiv

    Jeffrey Townsend

  162. Solving the ecological puzzle of mycorrhizal associations using data from annotated collections and environmental samples – an example of saddle fungi

    Article • Environmental Microbiology Reports, July 2015, Wiley

    Jeffrey Townsend

  163. Correction: Harnessing Case Isolation and Ring Vaccination to Control Ebola

    Article • PLoS Neglected Tropical Diseases, June 2015, PLOS

    Jeffrey Townsend

  164. Harnessing Case Isolation and Ring Vaccination to Control Ebola

    Article • PLoS Neglected Tropical Diseases, May 2015, PLOS

    Jeffrey Townsend

  165. Gene Expression Evolves under a House-of-Cards Model of Stabilizing Selection

    Article • Molecular Biology and Evolution, April 2015, Oxford University Press (OUP)

    Jeffrey Townsend

  166. Under-reporting and case fatality estimates for emerging epidemics

    Article • BMJ, March 2015, BMJ

    Jeffrey Townsend

  167. H-CLAP: hierarchical clustering within a linear array with an application in genetics

    Article • Statistical Applications in Genetics and Molecular Biology, January 2015, De Gruyter

    Jeffrey Townsend

  168. Epidemiological and Viral Genomic Sequence Analysis of the 2014 Ebola Outbreak Reveals Clustered Transmission

    Article • Clinical Infectious Diseases, December 2014, Oxford University Press (OUP)

    Jeffrey Townsend

  169. The peopling of the African continent and the diaspora into the new world

    Article • Current Opinion in Genetics & Development, December 2014, Elsevier

    Jeffrey Townsend

  170. Strategies for containing Ebola in West Africa

    Article • Science, November 2014, American Association for the Advancement of Science

    Jeffrey Townsend

  171. Neural Gene Expression Profiles and Androgen Levels Underlie Alternative Reproductive Tactics in the Ocellated Wrasse,Symphodus ocellatus

    Article • Ethology, October 2014, Wiley

    Jeffrey Townsend

  172. Gene Expression Differences among Three Neurospora Species Reveal Genes Required for Sexual Reproduction in Neurospora crassa

    Article • PLOS One, October 2014, PLOS

    Jeffrey Townsend

  173. Genome-Wide Characterization of Light-Regulated Genes inNeurospora crassa

    Article • G3 Genes Genomes Genetics, September 2014, Oxford University Press (OUP)

    Jeffrey Townsend

  174. Phylogenetic informativeness reconciles ray-finned fish molecular divergence times

    Article • BMC Evolutionary Biology, August 2014, Springer Science + Business Media

    Dr Alex Dornburg, Jeffrey Townsend

  175. The impact of incorporating molecular evolutionary model into predictions of phylogenetic signal and noise

    Article • Frontiers in Ecology and Evolution, April 2014, Frontiers

    Jeffrey Townsend

  176. Probabilistic uncertainty analysis of epidemiological modeling to guide public health intervention policy

    Article • Epidemics, March 2014, Elsevier

    Jeffrey Townsend

  177. Detecting rare gene transfer events in bacterial populations

    Article • Frontiers in Microbiology, January 2014, Frontiers

    Jeffrey Townsend

  178. Optimized primers and other critical conditions for efficient fusion PCR to generate knockout vectors in filamentous fungi.

    Article • Fungal Genetics Reports, December 2013, New Prairie Press

    Jeffrey Townsend

  179. Global Gene Expression and Focused Knockout Analysis Reveals Genes Associated with Fungal Fruiting Body Development in Neurospora crassa

    Article • Eukaryotic Cell, November 2013, ASM Journals

    Jeffrey Townsend

  180. Phylogenetic and phylogenomic overview of the Polyporales

    Article • Mycologia, November 2013, Taylor & Francis

    Jeffrey Townsend

  181. Potential Cost-Effectiveness of Schistosomiasis Treatment for Reducing HIV Transmission in Africa – The Case of Zimbabwean Women

    Article • PLoS Neglected Tropical Diseases, August 2013, PLOS

    Jeffrey Townsend

  182. Sex-linked transcriptional divergence in the hermaphrodite fungus Neurospora tetrasperma

    Article • Proceedings of the Royal Society B Biological Sciences, June 2013, Royal Society Publishing

    Jeffrey Townsend

  183. Epidemiological mechanisms of genetic resistance to kuru

    Article • Journal of The Royal Society Interface, June 2013, Royal Society Publishing

    Jeffrey Townsend

  184. AuthorReward: increasing community curation in biological knowledge wikis through automated authorship quantification

    Article • Bioinformatics, June 2013, Oxford University Press (OUP)

    Jeffrey Townsend

  185. Optimal targeting of seasonal influenza vaccination toward younger ages is robust to parameter uncertainty

    Article • Vaccine, June 2013, Elsevier

    Jeffrey Townsend

  186. Cost-effectiveness of a community-based intervention for reducing the transmission of Schistosoma haematobium and HIV in Africa

    Article • Proceedings of the National Academy of Sciences, April 2013, Proceedings of the National Academy of Sciences

    Jeffrey Townsend

  187. Yeast response to LA virus indicates coadapted global gene expression during mycoviral infection

    Article • FEMS Yeast Research, January 2013, Oxford University Press (OUP)

    Jeffrey Townsend

  188. Evaluating Phylogenetic Informativeness as a Predictor of Phylogenetic Signal for Metazoan, Fungal, and Mammalian Phylogenomic Data Sets

    Article • BioMed Research International, January 2013, Wiley

    Jeffrey Townsend

  189. Response to: The relative utility of sequence divergence and phylogenetic informativeness profiling in phylogenetic study design

    Article • Molecular Phylogenetics and Evolution, January 2013, Elsevier

    Jeffrey Townsend

  190. Controlling Antimicrobial Resistance through Targeted, Vaccine-Induced Replacement of Strains

    Article • PLOS One, December 2012, PLOS

    Jeffrey Townsend, Professor Melinda M Pettigrew

  191. Analyses of expressed sequence tags in Neurosporareveal rapid evolution of genes associated with the early stages of sexual reproduction in fungi

    Article • BMC Evolutionary Biology, November 2012, Springer Science + Business Media

    Jeffrey Townsend

  192. Potential for Rabies Control through Dog Vaccination in Wildlife-Abundant Communities of Tanzania

    Article • PLoS Neglected Tropical Diseases, August 2012, PLOS

    Jeffrey Townsend

  193. Reevaluation of Epidemiological Data Demonstrates That It Is Consistent With Cross-Immunity Among Human Papillomavirus Types

    Article • The Journal of Infectious Diseases, August 2012, Oxford University Press (OUP)

    Jeffrey Townsend

  194. Transcriptome analyses during fruiting body formation in Fusarium graminearum and Fusarium verticillioides reflect species life history and ecology

    Article • Fungal Genetics and Biology, August 2012, Elsevier

    Jeffrey Townsend

  195. Resampling QTL Effects in the QTL Sign Test Leads to Incongruous Sensitivity to Variance in Effect Size

    Article • G3 Genes Genomes Genetics, August 2012, Oxford University Press (OUP)

    Jeffrey Townsend

  196. Sex-specific gene expression during asexual development of Neurospora crassa

    Article • Fungal Genetics and Biology, July 2012, Elsevier

    Jeffrey Townsend

  197. RBE controls microRNA164 expression to effect floral organogenesis

    Article • Development, June 2012, The Company of Biologists

    Jeffrey Townsend

  198. Differential impact of nutrition on developmental and metabolic gene expression during fruiting body development in Neurospora crassa

    Article • Fungal Genetics and Biology, May 2012, Elsevier

    Jeffrey Townsend

  199. The influence of altruism on influenza vaccination decisions

    Article • Journal of The Royal Society Interface, April 2012, Royal Society Publishing

    Jeffrey Townsend

  200. A Test for Selection Employing Quantitative Trait Locus and Mutation Accumulation Data

    Article • Genetics, April 2012, Oxford University Press (OUP)

    Jeffrey Townsend

  201. Codon Deviation Coefficient: a novel measure for estimating codon usage bias and its statistical significance

    Article • BMC Bioinformatics, March 2012, Springer Science + Business Media

    Jeffrey Townsend

  202. Phylogenetic Signal and Noise: Predicting the Power of a Data Set to Resolve Phylogeny

    Article • Systematic Biology, March 2012, Oxford University Press (OUP)

    Jeffrey Townsend

  203. Assessing the Probability of Detection of Horizontal Gene Transfer Events in Bacterial Populations

    Article • Frontiers in Microbiology, January 2012, Frontiers

    Jeffrey Townsend

  204. Abundant Gene-by-Environment Interactions in Gene Expression Reaction Norms to Copper within Saccharomyces cerevisiae

    Article • Genome Biology and Evolution, January 2012, Oxford University Press (OUP)

    Jeffrey Townsend

  205. Data Integration in Bioinformatics: Current Efforts and Challenges

    Article • November 2011, IntechOpen

    Jeffrey Townsend

  206. Phylogenetic informativeness profiling of 12 genes for 28 vertebrate taxa without divergence dates

    Article • Molecular Phylogenetics and Evolution, August 2011, Elsevier

    Jeffrey Townsend

  207. PhyDesign: an online application for profiling phylogenetic informativeness

    Article • BMC Evolutionary Biology, May 2011, Springer Science + Business Media

    Jeffrey Townsend

  208. Tasting Soil Fungal Diversity with Earth Tongues: Phylogenetic Test of SATé Alignments for Environmental ITS Data

    Article • PLOS One, April 2011, PLOS

    Jeffrey Townsend

  209. SIR2 and other genes are abundantly expressed in long-lived natural segregants for replicative aging of the budding yeast Saccharomyces cerevisiae

    Article • FEMS Yeast Research, March 2011, Oxford University Press (OUP)

    Jeffrey Townsend

  210. Taxon Sampling and the Optimal Rates of Evolution for Phylogenetic Inference

    Article • Systematic Biology, February 2011, Oxford University Press (OUP)

    Jeffrey Townsend

  211. Retrospective evidence for a biological cost of vancomycin resistance determinants in the absence of glycopeptide selective pressures

    Article • Journal of Antimicrobial Chemotherapy, January 2011, Oxford University Press (OUP)

    Jeffrey Townsend

  212. Getting the Most Out of Your Fungal Microarray Data: Two Cost- and Time-Effective Methods

    Article • January 2011, Springer Science + Business Media

    Jeffrey Townsend

  213. Northern species of earth tongue genus Thuemenidium revisited, considering morphology, ecology and molecular phylogeny

    Article • Mycologia, September 2010, Taylor & Francis

    Jeffrey Townsend

  214. Multi-targeted priming for genome-wide gene expression assays

    Article • BMC Genomics, August 2010, Springer Science + Business Media

    Jeffrey Townsend

  215. LOX: inferring Level Of eXpression from diverse methods of census sequencing

    Article • Bioinformatics, June 2010, Oxford University Press (OUP)

    Jeffrey Townsend

  216. Identification of new molecular markers for assembling the eukaryotic tree of life

    Article • Molecular Phylogenetics and Evolution, June 2010, Elsevier

    Jeffrey Townsend

  217. Optimal Selection of Gene and Ingroup Taxon Sampling for Resolving Phylogenetic Relationships

    Article • Systematic Biology, May 2010, Oxford University Press (OUP)

    Jeffrey Townsend

  218. The filamentous fungal gene expression database (FFGED)

    Article • Fungal Genetics and Biology, March 2010, Elsevier

    Jeffrey Townsend

  219. Evolving gene expression: from G to E to G×E

    Article • Trends in Ecology & Evolution, December 2009, Elsevier

    Jeffrey Townsend

  220. Evolution of Reproductive Morphology in Leaf Endophytes

    Article • September 2009, SciVee, Inc

    Jeffrey Townsend

  221. Maximum-Likelihood Model Averaging To Profile Clustering of Site Types across Discrete Linear Sequences

    Article • August 2009, SciVee, Inc

    Jeffrey Townsend

  222. Geoglossomycetes cl. nov., Geoglossales ord. nov. and taxa above class rank in the Ascomycota Tree of Life

    Article • Persoonia - Molecular Phylogeny and Evolution of Fungi, June 2009, Centraalbureau voor Schimmelcultures (CBS)

    Jeffrey Townsend

  223. Maximum-Likelihood Model Averaging To Profile Clustering of Site Types across Discrete Linear Sequences

    Article • PLoS Computational Biology, June 2009, PLOS

    Jeffrey Townsend

  224. Factors affecting the reversal of antimicrobial-drug resistance

    Article • The Lancet Infectious Diseases, June 2009, Elsevier

    Jeffrey Townsend

  225. The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits

    Article • Systematic Biology, April 2009, Oxford University Press (OUP)

    Jeffrey Townsend

  226. Evolution of Reproductive Morphology in Leaf Endophytes

    Article • PLOS One, January 2009, PLOS

    Jeffrey Townsend

  227. Measuring Transcription Factor–Binding Site Turnover: A Maximum Likelihood Approach Using Phylogenies

    Article • Genome Biology and Evolution, January 2009, Oxford University Press (OUP)

    Jeffrey Townsend

  228. Article Commentary: Snapshots of Tree Space

    Article • Evolutionary Bioinformatics, January 2009, SAGE Publications

    Jeffrey Townsend

  229. RNA extraction, probe preparation, and competitive hybridization for transcriptional profiling using Neurospora crassa long-oligomer DNA microarrays

    Article • Fungal Genetics Reports, December 2008, New Prairie Press

    Jeffrey Townsend

  230. Bringing Web 2.0 to bioinformatics

    Article • Briefings in Bioinformatics, October 2008, Oxford University Press (OUP)

    Jeffrey Townsend

  231. HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0

    Article • Journal of Biomedical Informatics, October 2008, Elsevier

    Jeffrey Townsend

  232. The Phylogenetic Informativeness of Nucleotide and Amino Acid Sequences for Reconstructing the Vertebrate Tree

    Article • Journal of Molecular Evolution, August 2008, Springer Science + Business Media

    Jeffrey Townsend

  233. Sleuthing the difference a nucleotide can make

    Article • Molecular Ecology, June 2008, Wiley

    Jeffrey Townsend

  234. Quantifying variation in gene expression

    Article • Molecular Ecology, June 2007, Wiley

    Jeffrey Townsend

  235. Profiling Phylogenetic Informativeness

    Article • Systematic Biology, April 2007, Oxford University Press (OUP)

    Jeffrey Townsend

  236. Enabling a Community to Dissect an Organism: Overview of the Neurospora Functional Genomics Project

    Article • January 2007, Elsevier

    Mi Shi, Professor jay dunlap, Jeffrey Townsend

  237. Eukaryotic microbes, species recognition and the geographic limits of species: examples from the kingdom Fungi

    Article • Philosophical Transactions of the Royal Society B Biological Sciences, October 2006, Royal Society Publishing

    Jeffrey Townsend

  238. Population structure and gene evolution in Saccharomyces cerevisiae

    Article • FEMS Yeast Research, August 2006, Oxford University Press (OUP)

    Jeffrey Townsend

  239. Phase-specific gene expression underlying morphological adaptations of the dimorphic human pathogenic fungus, Coccidioides posadasii

    Article • Fungal Genetics and Biology, August 2006, Elsevier

    Jeffrey Townsend

  240. Ecological and evolutionary genomics of Saccharomyces cerevisiae

    Article • Molecular Ecology, February 2006, Wiley

    Jeffrey Townsend

  241. Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination

    Article • Nucleic Acids Research, November 2005, Oxford University Press (OUP)

    Jeffrey Townsend

  242. Concerted Evolution in the Repeats of an Immunomodulating Cell Surface Protein, SOWgp, of the Human Pathogenic Fungi Coccidioides immitis and C. posadasii

    Article • Genetics, September 2005, Oxford University Press (OUP)

    Jeffrey Townsend

  243. Horizontal gene transfer, genome innovation and evolution

    Article • Nature Reviews Microbiology, August 2005, Springer Science + Business Media

    Jeffrey Townsend, Professor Johann Peter Gogarten

  244. Designing Experiments Using Spotted Microarrays to Detect Gene Regulation Differences Within and Among Species

    Article • January 2005, Elsevier

    Jeffrey Townsend

  245. A Bayesian method for analysing spotted microarray data

    Article • Briefings in Bioinformatics, January 2005, Oxford University Press (OUP)

    Jeffrey Townsend

  246. Monitoring horizontal gene transfer

    Article • Nature Biotechnology, November 2004, Springer Science + Business Media

    Jeffrey Townsend

  247. Monitoring and modeling horizontal gene transfer

    Article • Nature Biotechnology, August 2004, Springer Science + Business Media

    Jeffrey Townsend

  248. Mitochondrial genome size variation in New World and Old World populations of Drosophila melanogaster

    Article • Heredity, May 2004, Springer Science + Business Media

    Jeffrey Townsend

  249. Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels and spotted DNA microarrays

    Article • BMC Bioinformatics, May 2004, Springer Science + Business Media

    Jeffrey Townsend

  250. Gene expression profiling in evolutionary genetics

    Article • January 2004, Cambridge University Press

    Jeffrey Townsend

  251. Multifactorial experimental design and the transitivity of ratios with spotted DNA microarrays

    Article • BMC Genomics, October 2003, Springer Science + Business Media

    Jeffrey Townsend

  252. Biodiversity: Exploring Values and Priorities in Conservation . By Dan L  Perlman and Glenn  Adelson. Oxford and Malden (Massachusetts): Blackwell Science. $49.95 (paper). ix + 182 p + 15 pl; ill.; index. ISBN: 0‐86542‐439‐X. 1997.

    Article • The Quarterly Review of Biology, September 2003, University of Chicago Press

    Jeffrey Townsend

  253. Population Genetic Variation in Genome-Wide Gene Expression

    Article • Molecular Biology and Evolution, April 2003, Oxford University Press (OUP)

    Jeffrey Townsend

  254. Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments

    Article • Genome Biology, November 2002, Springer Science + Business Media

    Jeffrey Townsend

  255. Pathway Processor: A Tool for Integrating Whole-Genome Expression Results into Metabolic Networks

    Article • Genome Research, July 2002, Cold Spring Harbor Laboratory Press

    Jeffrey Townsend

  256. Manifold anomalies in gene expression in a vineyard isolate of Saccharomyces cerevisiae revealed by DNA microarray analysis

    Article • Proceedings of the National Academy of Sciences, October 2000, Proceedings of the National Academy of Sciences

    Jeffrey Townsend

  257. The Kinetics of Transposable Element Autoregulation

    Article • Genetica, May 2000, Springer Science + Business Media

    Jeffrey Townsend

  258. Solvent Accessibility and Purifying Selection Within Proteins of Escherichia coli and Salmonella enterica

    Article • Molecular Biology and Evolution, February 2000, Oxford University Press (OUP)

    Jeffrey Townsend