All Stories

  1. Root-Associated Bacterial Community Shifts in Hydroponic Lettuce Cultured with Urine-Derived Fertilizer

    Article • Microorganisms, June 2021, MDPI AG

    Mr Frederiek-Maarten Kerckhof

  2. PhenoGMM: Gaussian Mixture Modeling of Cytometry Data Quantifies Changes in Microbial Community Structure

    Article • mSphere, February 2021, ASM Journals

    Mr Frederiek-Maarten Kerckhof

  3. Cytometric fingerprints of gut microbiota predict Crohn’s disease state

    Article • The ISME Journal, September 2020, Oxford University Press (OUP)

    Mr Frederiek-Maarten Kerckhof

  4. Bacterial mock communities as standards for reproducible cytometric microbiome analysis

    Article • Nature Protocols, August 2020, Springer Science + Business Media

    Mr Frederiek-Maarten Kerckhof

  5. A prebiotic-enhanced lipid-based nutrient supplement (LNSp) increases Bifidobacterium relative abundance and enhances short-chain fatty acid production in simulated colonic microbiota from undernourished infants

    Article • FEMS Microbiology Ecology, June 2020, Oxford University Press (OUP)

    Mr Frederiek-Maarten Kerckhof

  6. Discriminating Bacterial Phenotypes at the Population and Single‐Cell Level: A Comparison of Flow Cytometry and Raman Spectroscopy Fingerprinting

    Article • Cytometry Part A, December 2019, Wiley

    Mr Frederiek-Maarten Kerckhof

  7. Microbial protein production from methane via electrochemical biogas upgrading

    Article • Chemical Engineering Journal, November 2019, Elsevier

    Mr Frederiek-Maarten Kerckhof

  8. Future prospects for dissecting inter-individual variability in the absorption, distribution and elimination of plant bioactives of relevance for cardiometabolic endpoints

    Article • Zeitschrift für Ernährungswissenschaft, October 2019, Springer Science + Business Media

    Mr Frederiek-Maarten Kerckhof

  9. Gut Microbiota of Migrating Wild Rabbit Fish (Siganus guttatus) Larvae Have Low Spatial and Temporal Variability

    Article • Microbial Ecology, October 2019, Springer Science + Business Media

    Mr Frederiek-Maarten Kerckhof

  10. Enriched hydrogen-oxidizing microbiomes show a high diversity of co-existing hydrogen-oxidizing bacteria

    Article • Applied Microbiology and Biotechnology, September 2019, Springer Science + Business Media

    Mr Frederiek-Maarten Kerckhof

  11. Cyt‐Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2018 Conference Workshops

    Article • Cytometry Part A, June 2019, Wiley

    Mr Gert Van Isterdael, Mr Frederiek-Maarten Kerckhof

  12. Cytometric fingerprints of gut microbiota predict Crohn’s disease state

    Article • May 2019, Cold Spring Harbor Laboratory Press

    Mr Frederiek-Maarten Kerckhof

  13. PhenoGMM: Gaussian mixture modelling of microbial cytometry data enables efficient predictions of biodiversity

    Article • May 2019, Cold Spring Harbor Laboratory Press

    Mr Frederiek-Maarten Kerckhof

  14. Learning Single‐Cell Distances from Cytometry Data

    Article • Cytometry Part A, May 2019, Wiley

    Mr Frederiek-Maarten Kerckhof

  15. Oxygen-reducing microbial cathodes monitoring toxic shocks in tap water

    Article • Biosensors and Bioelectronics, May 2019, Elsevier

    Mr Frederiek-Maarten Kerckhof

  16. Determining stoichiometry and kinetics of two thermophilic nitrifying communities as a crucial step in the development of thermophilic nitrogen removal

    Article • Water Research, March 2019, Elsevier

    Mr Frederiek-Maarten Kerckhof

  17. A unified framework for unconstrained and constrained ordination of microbiome read count data

    Article • PLOS One, February 2019, PLOS

    Mr Frederiek-Maarten Kerckhof

  18. Characterizing phenotypic heterogeneity in isogenic bacterial populations using flow cytometry and Raman spectroscopy

    Article • February 2019, Cold Spring Harbor Laboratory Press

    Mr Frederiek-Maarten Kerckhof

  19. Reduced TCA cycle rates at high hydrostatic pressure hinder hydrocarbon degradation and obligate oil degraders in natural, deep-sea microbial communities

    Article • The ISME Journal, December 2018, Springer Science + Business Media

    Mr Frederiek-Maarten Kerckhof

  20. Mucin Degradation Niche as a Driver of Microbiome Composition and Akkermansia Muciniphila Abundance in a Dynamic Gut Model is Donor Independent

    Article • FEMS Microbiology Ecology, September 2018, Oxford University Press (OUP)

    Mr Frederiek-Maarten Kerckhof

  21. Characterization of spoilage markers in modified atmosphere packaged iceberg lettuce

    Article • International Journal of Food Microbiology, August 2018, Elsevier

    Mr Frederiek-Maarten Kerckhof

  22. Pinpointing wastewater and process parameters controlling the AOB to NOB activity ratio in sewage treatment plants

    Article • Water Research, July 2018, Elsevier

    Mr Frederiek-Maarten Kerckhof

  23. Label-free Raman characterization of bacteria calls for standardized procedures

    Article • Journal of Microbiological Methods, June 2018, Elsevier

    Mr Frederiek-Maarten Kerckhof

  24. Chronic rhinosinusitis with nasal polyps is characterized by dysbacteriosis of the nasal microbiota

    Article • Scientific Reports, May 2018, Springer Science + Business Media

    Mr Frederiek-Maarten Kerckhof, Prof. em. Mario Vaneechoutte

  25. Microbiological, chemical and sensory spoilage analysis of raw Atlantic cod ( Gadus morhua ) stored under modified atmospheres

    Article • Food Microbiology, April 2018, Elsevier

    Mr Frederiek-Maarten Kerckhof

  26. Initial evenness determines diversity and cell density dynamics in synthetic microbial ecosystems

    Article • Scientific Reports, January 2018, Nature

    Mr Frederiek-Maarten Kerckhof

  27. Flow cytometric fingerprinting for microbial strain discrimination and physiological characterization

    Article • Cytometry Part A, December 2017, Wiley

    Mr Frederiek-Maarten Kerckhof

  28. Inter-individual differences determine the outcome of wheat bran colonization by the human gut microbiome

    Article • Environmental Microbiology, July 2017, Wiley

    Mr Frederiek-Maarten Kerckhof

  29. In vitro Increased Respiratory Activity of Selected Oral Bacteria May Explain Competitive and Collaborative Interactions in the Oral Microbiome

    Article • Frontiers in Cellular and Infection Microbiology, June 2017, Frontiers

    Mr Frederiek-Maarten Kerckhof

  30. Reconciliation between operational taxonomic units and species boundaries

    Article • FEMS Microbiology Ecology, March 2017, Oxford University Press (OUP)

    Professor Peter A Vandamme, Natalie Leys, Mr Frederiek-Maarten Kerckhof

  31. Efficient molasses fermentation under high salinity by inocula of marine and terrestrial origin

    Article • Biotechnology for Biofuels, January 2017, Springer Science + Business Media

    Mr Frederiek-Maarten Kerckhof

  32. Effect of Operational Parameters in the Continuous Anaerobic Fermentation of Cheese Whey on Titers, Yields, Productivities, and Microbial Community Structures

    Article • ACS Sustainable Chemistry & Engineering, December 2016, American Chemical Society (ACS)

    Mr Frederiek-Maarten Kerckhof

  33. Community structure, population dynamics and diversity of fungi in a full-scale membrane bioreactor (MBR) for urban wastewater treatment

    Article • Water Research, November 2016, Elsevier

    Mr Frederiek-Maarten Kerckhof

  34. New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase

    Article • Environmental Microbiology, September 2016, Wiley

    Professor Peter A Vandamme, Dr. Huub JM Op den Camp, Mr Frederiek-Maarten Kerckhof

  35. Absolute quantification of microbial taxon abundances

    Article • The ISME Journal, September 2016, Oxford University Press (OUP)

    Mr Frederiek-Maarten Kerckhof

  36. Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System

    Article • Frontiers in Microbiology, August 2016, Frontiers

    Mr Frederiek-Maarten Kerckhof

  37. Functional stabilisation and partner selection during repeated co-culivation in a methanotrophic interactome

    Article • May 2016, PeerJ

    Mr Frederiek-Maarten Kerckhof

  38. Functional stabilisation and partner selection during repeated co-culivation in a methanotrophic interactome

    Article • May 2016, PeerJ

    Mr Frederiek-Maarten Kerckhof

  39. Bacterial Exchange in Household Washing Machines

    Article • Frontiers in Microbiology, December 2015, Frontiers

    Mr Frederiek-Maarten Kerckhof

  40. Bacillus cereus Adhesion to Simulated Intestinal Mucus Is Determined by Its Growth on Mucin, Rather Than Intestinal Environmental Parameters

    Article • Foodborne Pathogens and Disease, November 2015, Mary Ann Liebert Inc

    Prof. Dr. Marc Heyndrickx, Mr Frederiek-Maarten Kerckhof

  41. Bacillus cereus NVH 0500/00 Can Adhere to Mucin but Cannot Produce Enterotoxins during Gastrointestinal Simulation

    Article • Applied and Environmental Microbiology, October 2015, ASM Journals

    Prof. Dr. Marc Heyndrickx, Mr Frederiek-Maarten Kerckhof

  42. Chronic cigarette smoke exposure induces microbial and inflammatory shifts and mucin changes in the murine gut

    Article • Environmental Microbiology, July 2015, Wiley

    Mr Frederiek-Maarten Kerckhof

  43. Exploring methane-oxidizing communities for the co-metabolic degradation of organic micropollutants

    Article • Applied Microbiology and Biotechnology, December 2014, Springer Science + Business Media

    Mr Frederiek-Maarten Kerckhof

  44. Microbial Odor Profile of Polyester and Cotton Clothes after a Fitness Session

    Article • Applied and Environmental Microbiology, August 2014, ASM Journals

    Mr Frederiek-Maarten Kerckhof

  45. Optimized Cryopreservation of Mixed Microbial Communities for Conserved Functionality and Diversity

    Article • PLOS One, June 2014, PLOS

    Professor Peter A Vandamme, Mr Frederiek-Maarten Kerckhof

  46. Development of an oral mucosa model to study host-microbiome interactions during wound healing

    Article • Applied Microbiology and Biotechnology, June 2014, Springer Science + Business Media

    Mr Frederiek-Maarten Kerckhof

  47. Exploration and prediction of interactions between methanotrophs and heterotrophs

    Article • Research in Microbiology, December 2013, Elsevier

    Mr Frederiek-Maarten Kerckhof

  48. Characterization of Staphylococcus and Corynebacterium Clusters in the Human Axillary Region

    Article • PLOS One, August 2013, PLOS

    Mr Frederiek-Maarten Kerckhof

  49. Conversion of Biogas to Bioproducts by Algae and Methane Oxidizing Bacteria

    Article • Environmental Science & Technology, December 2012, American Chemical Society (ACS)

    Mr Frederiek-Maarten Kerckhof

  50. Butyrate-producing Clostridium cluster XIVa species specifically colonize mucins in an in vitro gut model

    Article • The ISME Journal, December 2012, Nature

    Mr Frederiek-Maarten Kerckhof

  51. Barcoded pyrosequencing analysis of the microbial community in a simulator of the human gastrointestinal tract showed a colon region-specific microbiota modulation for two plant-derived polysaccharide blends

    Article • Antonie van Leeuwenhoek, October 2012, Springer Science + Business Media

    Mr Frederiek-Maarten Kerckhof

  52. Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies

    Article • Environmental Microbiology Reports, August 2012, Wiley

    Mr Frederiek-Maarten Kerckhof

  53. Strain-Specific Transfer of Antibiotic Resistance from an Environmental Plasmid to Foodborne Pathogens

    Article • Journal of Biomedicine and Biotechnology, January 2012, Hindawi Publishing Corporation

    Mr Frederiek-Maarten Kerckhof