All Stories

  1. Common Dysregulated Pathways and Genes in Alzheimer’s, Parkinson’s, and Huntington’s Diseases: A Computational Analysis to Nominate Candidate Gene Targets for Drug Repurposing

    Article • July 2026, openRxiv

    Dr. Eman Badr

  2. Integrated Genome-Wide Association Study and Machine Learning Approach for Characterizing the Determinants of Biofilm Formation in Staphylococcus aureus

    Article • Interdisciplinary Sciences Computational Life Sciences, July 2026, Springer Science + Business Media

    Dr. Eman Badr

  3. Integrative multi-omics pipeline for analysis of checkpoint blockade therapy

    Article • Network Modeling Analysis in Health Informatics and Bioinformatics, June 2026, Springer Science + Business Media

    Dr. Eman Badr

  4. Pathoadaptive evolution and clonal dissemination of community- associated methicillin-resistant Staphylococcus aureus in Egypt

    Article • BMC Infectious Diseases, April 2026, Springer Science + Business Media

    Dr. Eman Badr, Dr Ben Pascoe

  5. AntiPan: a genome-informed in silico pipeline for advancing subunit vaccine discovery against Staphylococcus aureus

    Article • Scientific Reports, February 2026, Springer Science + Business Media

    Dr. Eman Badr

  6. An Integrative Computational Pipeline for Proteomic Biomarker Discovery: A Pilot Study on Egyptian Ewing Sarcoma Patients

    Article • October 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Eman Badr

  7. The landscape of cyclin-dependent kinase 4/6 inhibitors in solid malignancies: emphasis on immunotherapy combinatorial strategies

    Article • Medical Oncology, August 2025, Springer Science + Business Media

    Dr. Eman Badr

  8. Multi-Omics-Based Subtyping of Ovarian Cancer Using Deep Learning and SVM Classification

    Article • July 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Eman Badr

  9. A computational framework for identifying cytoskeletal genes associated with age-related diseases

    Article • Scientific Reports, April 2025, Springer Science + Business Media

    Dr. Eman Badr

  10. Trimetazidine mitigates methotrexate‐induced liver damage: Insights From biochemical, histological, and in silico analyses

    Article • Archiv der Pharmazie, April 2025, Wiley

    Dr. Eman Badr

  11. Development of hepatocellular carcinoma organoid model recapitulating HIF-1A metabolic signature

    Article • Clinical and Experimental Medicine, November 2024, Springer Science + Business Media

    Dr. Eman Badr

  12. A multi-omics approach for biomarker discovery in neuroblastoma: a network-based framework

    Article • npj Systems Biology and Applications, May 2024, Springer Science + Business Media

    Dr. Eman Badr

  13. AI In Healthcare: Using Bayesian Networks To Predict Response To Immune Checkpoint Blockades

    Article • April 2024, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Eman Badr

  14. Recombination-mediated dissemination of Methicillin-resistant S. aureus clonal complex 1 in the Egyptian health care settings

    Article • Annals of Clinical Microbiology and Antimicrobials, December 2023, Springer Science + Business Media

    Dr Ben Pascoe, Dr. Eman Badr

  15. Deep Learning for Image Segmentation: A Focus on Medical Imaging

    Article • Computers Materials & Continua, January 2023, Tsinghua University Press

    Dr. Eman Badr

  16. A feature selection-based framework to identify biomarkers for cancer diagnosis: A focus on lung adenocarcinoma

    Article • PLOS One, September 2022, PLOS

    Dr. Eman Badr

  17. Writer adaptation for E2E Arabic online handwriting recognition via adversarial multi task learning

    Article • Egyptian Informatics Journal, September 2022, Elsevier

    Dr. Eman Badr

  18. SARS-CoV-2 potential drugs, drug targets, and biomarkers: a viral-host interaction network-based analysis

    Article • Scientific Reports, July 2022, Springer Science + Business Media

    Dr. Eman Badr

  19. Transformer-based Models for Arabic Online Handwriting Recognition

    Article • International Journal of Advanced Computer Science and Applications, January 2022, The Science and Information Organization

    Dr. Eman Badr

  20. Transcriptional Analysis of Nuclear-Encoded Mitochondrial Genes in Eight Neurodegenerative Disorders: The Analysis of Seven Diseases in Reference to Friedreich’s Ataxia

    Article • Frontiers in Genetics, December 2021, Frontiers

    Dr. Eman Badr

  21. DeepOnKHATT: An End-to-End Arabic Online Handwriting Recognition System

    Article • International Journal of Pattern Recognition and Artificial Intelligence, July 2021, World Scientific Pub Co Pte Lt

    Dr. Eman Badr

  22. Images in Space and Time

    Article • ACM Computing Surveys, July 2021, ACM (Association for Computing Machinery)

    Dr. Eman Badr

  23. The overexpression of DNA repair genes in invasive ductal and lobular breast carcinomas: Insights on individual variations and precision medicine

    Article • PLOS One, March 2021, PLOS

    Dr. Eman Badr

  24. LDLCT An Instance-Based Framework for Lesion Detection on Lung CT Scans

    Article • June 2019, Institute of Electrical & Electronics Engineers (IEEE)

    Dr. Eman Badr

  25. A survey on human detection surveillance systems for Raspberry Pi

    Article • Image and Vision Computing, May 2019, Elsevier

    Dr. Eman Badr

  26. Computational Identification of Tissue-Specific Splicing Regulatory Elements in Human Genes from RNA-Seq Data

    Article • PLOS One, November 2016, PLOS

    Dr. Eman Badr, Dr Mahmoud M ElHefnawi

  27. CoSREM: a graph mining algorithm for the discovery of combinatorial splicing regulatory elements

    Article • BMC Bioinformatics, September 2015, Springer Science + Business Media

    Dr. Eman Badr

  28. Identifying Splicing Regulatory Elements with de Bruijn Graphs

    Article • Journal of Computational Biology, December 2014, Mary Ann Liebert Inc

    Dr. Eman Badr

  29. A System to Automatically Classify and Name Any Individual Genome-Sequenced Organism Independently of Current Biological Classification and Nomenclature

    Article • PLOS One, February 2014, PLOS

    Dr. Eman Badr