All Stories

  1. Genetic discovery in vesicoureteral reflux using exome sequencing: A pilot study

    Article • Medical Journal Armed Forces India, September 2025, Elsevier

    Debasis Dash

  2. Single-cell profiling of the lung immune cells of diabetes-tuberculosis comorbidity reveals reduced type-II interferon and elevated Th17 responses

    Article • May 2025, eLife

    Debasis Dash

  3. Single-cell profiling of the lung immune cells of diabetes-tuberculosis comorbidity reveals reduced type-II interferon and elevated Th17 responses

    Article • May 2025, eLife

    Debasis Dash

  4. Single-cell profiling of the lung immune cells of diabetes-tuberculosis comorbidity reveals reduced type-II interferon and elevated Th17 responses

    Article • October 2024, Cold Spring Harbor Laboratory Press

    Debasis Dash

  5. Proteogenomics 101: a primer on database search strategies

    Article • Journal of Proteins and Proteomics, November 2023, Springer Science + Business Media

    Debasis Dash

  6. Quality control of variant peptides identified through proteogenomics- catching the (un)usual suspects

    Article • June 2023, Cold Spring Harbor Laboratory Press

    Debasis Dash

  7. Downregulation of peripheral PTGS2/COX-2 in response to valproate treatment in patients with epilepsy

    Article • Scientific Reports, February 2020, Springer Science + Business Media

    Debasis Dash, Professor Luciano Saso

  8. Fusion transcripts in normal human cortex increase with age and show distinct genomic features for single cells and tissues

    Article • Scientific Reports, January 2020, Springer Science + Business Media

    Debasis Dash

  9. Investigating Coronary Artery Disease methylome through targeted bisulfite sequencing

    Article • Gene, December 2019, Elsevier

    Debasis Dash

  10. Host cholesterol dependent activation of VapC12 toxin enriches persister population duringMycobacterium tuberculosisinfection

    Article • November 2019, Cold Spring Harbor Laboratory Press

    Debasis Dash

  11. Telomere repeat–binding factor 2 binds extensively to extra-telomeric G-quadruplexes and regulates the epigenetic status of several gene promoters

    Article • Journal of Biological Chemistry, November 2019, Elsevier

    Debasis Dash

  12. The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species

    Article • PeerJ, November 2019, PeerJ

    Debasis Dash

  13. Cellular responses to proteostasis perturbations reveal non-optimal feedback in chaperone networks

    Article • Cellular and Molecular Life Sciences, January 2019, Springer Science + Business Media

    Debasis Dash

  14. Quantitative Lipid Droplet Proteomics Reveals Mycobacterium tuberculosis Induced Alterations in Macrophage Response to Infection

    Article • ACS Infectious Diseases, January 2019, American Chemical Society (ACS)

    Debasis Dash

  15. VitiVar: A locus specific database of vitiligo associated genes and variations

    Article • Gene, January 2019, Elsevier

    Debasis Dash

  16. The Complete Chloroplast Genome of Dendrobium nobile, an endangered medicinal orchid from Northeast India and its comparison with related chloroplast genomes of Dendrobium species

    Article • May 2018, Cold Spring Harbor Laboratory Press

    Debasis Dash

  17. Adipocyte Model of Mycobacterium tuberculosis Infection Reveals Differential Availability of Iron to Bacilli in the Lipid-Rich Caseous Environment

    Article • Infection and Immunity, April 2018, ASM Journals

    Debasis Dash

  18. Western Indian Rural Gut Microbial Diversity in Extreme Prakriti Endo-Phenotypes Reveals Signature Microbes

    Article • Frontiers in Microbiology, February 2018, Frontiers

    Debasis Dash

  19. Recapitulation of Ayurveda constitution types by machine learning of phenotypic traits

    Article • PLOS One, October 2017, PLOS

    Debasis Dash

  20. Comparative Genomics of Host–Symbiont and Free-Living Oceanobacillus Species

    Article • Genome Biology and Evolution, May 2017, Oxford University Press (OUP)

    Debasis Dash

  21. Data Intensive Genome Level Analysis for Identifying Novel, Non-Toxic Drug Targets for Multi Drug Resistant Mycobacterium tuberculosis

    Article • Scientific Reports, April 2017, Springer Science + Business Media

    Debasis Dash

  22. Ayurgenomics for stratified medicine: TRISUTRA consortium initiative across ethnically and geographically diverse Indian populations

    Article • Journal of Ethnopharmacology, February 2017, Elsevier

    Debasis Dash

  23. Choosing an Optimal Database for Protein Identification from Tandem Mass Spectrometry Data

    Article • December 2016, Springer Science + Business Media

    Debasis Dash

  24. Integrating transcriptome and proteome profiling: Strategies and applications

    Article • PROTEOMICS, August 2016, Wiley

    Debasis Dash

  25. Leveraging Structural Hierarchy for Scalable Network Comparison

    Article • January 2016, Springer Science + Business Media

    Debasis Dash

  26. Proteogenomic Tools and Approaches to Explore Protein Coding Landscapes of Eukaryotic Genomes

    Article • January 2016, Springer Science + Business Media

    Debasis Dash

  27. Proteogenomics of rare taxonomic phyla: A prospective treasure trove of protein coding genes

    Article • PROTEOMICS, November 2015, Wiley

    Debasis Dash

  28. Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome Annotation

    Article • Molecular & Cellular Proteomics, November 2015, American Society for Biochemistry & Molecular Biology (ASBMB)

    Debasis Dash

  29. Polyketide Quinones Are Alternate Intermediate Electron Carriers during Mycobacterial Respiration in Oxygen-Deficient Niches

    Article • Molecular Cell, November 2015, Elsevier

    Debasis Dash

  30. Accurate Classification of Biological Data Using Ensembles

    Article • November 2015, Institute of Electrical & Electronics Engineers (IEEE)

    Debasis Dash

  31. Expression profiling of lymph nodes in tuberculosis patients reveal inflammatory milieu at site of infection

    Article • Scientific Reports, October 2015, Nature

    Dr Andaleeb Sajid, Debasis Dash

  32. Probing the Missing Human Proteome: A Computational Perspective

    Article • Journal of Proteome Research, October 2015, American Chemical Society (ACS)

    Debasis Dash

  33. Transcriptome and venom proteome of the box jellyfish Chironex fleckeri

    Article • BMC Genomics, May 2015, Springer Science + Business Media

    Debasis Dash

  34. Extensive Copy Number Variations in Admixed Indian Population of African Ancestry: Potential Involvement in Adaptation

    Article • Genome Biology and Evolution, December 2014, Oxford University Press (OUP)

    Debasis Dash

  35. Discovery of rare protein-coding genes in model methylotrophMethylobacterium extorquensAM1

    Article • PROTEOMICS, October 2014, Wiley

    Debasis Dash

  36. How do eubacterial organisms manage aggregation-prone proteome?

    Article • F1000Research, June 2014, Faculty of 1000, Ltd.

    Mr Kausik Chakraborty, Debasis Dash, Vasudha Bhatnagar

  37. Gene-Rich Large Deletions Are Overrepresented in POAG Patients of Indian and Caucasian Origins

    Article • Investigative Ophthalmology & Visual Science, May 2014, Association for Research in Vision and Ophthalmology (ARVO)

    Debasis Dash

  38. Selection of relevant features from amino acids enables development of robust classifiers

    Article • Amino Acids, March 2014, Springer Science + Business Media

    Debasis Dash

  39. Proteogenomic Analysis of Bradyrhizobium japonicum USDA110 Using Genosuite, an Automated Multi-algorithmic Pipeline

    Article • Molecular & Cellular Proteomics, November 2013, Elsevier

    Debasis Dash

  40. Novel mutations in typical and atypical genetic loci through exome sequencing in autosomal recessive cerebellar ataxia families

    Article • Clinical Genetics, October 2013, Wiley

    Debasis Dash

  41. ProteoStats—a library for estimating false discovery rates in proteomics pipelines

    Article • Bioinformatics, August 2013, Oxford University Press (OUP)

    Debasis Dash

  42. Exosome-enclosed microRNAs in exhaled breath hold potential for biomarker discovery in patients with pulmonary diseases

    Article • Journal of Allergy and Clinical Immunology, July 2013, Elsevier

    Debasis Dash

  43. Electrostatic Mis-Interactions Cause Overexpression Toxicity of Proteins in E. coli

    Article • PLOS One, May 2013, PLOS

    Debasis Dash

  44. Learning from Decoys to Improve the Sensitivity and Specificity of Proteomics Database Search Results

    Article • PLOS One, November 2012, PLOS

    Debasis Dash

  45. Crowd Sourcing a New Paradigm for Interactome Driven Drug Target Identification in Mycobacterium tuberculosis

    Article • PLOS One, July 2012, PLOS

    Shefin Basheera, Debasis Dash

  46. Knowledge engineering for health: A new discipline required to bridge the “ICT gap” between research and healthcare

    Article • Human Mutation, April 2012, Hindawi Publishing Corporation

    Debasis Dash

  47. Location of disorder in coiled coilproteins is influenced by its biological role and subcellular localization: a GO-based study on human proteome

    Article • Molecular BioSystems, January 2012, Royal Society of Chemistry

    Debasis Dash

  48. A Systematic Analysis of Eluted Fraction of Plasma Post Immunoaffinity Depletion: Implications in Biomarker Discovery

    Article • PLOS One, September 2011, PLOS

    Debasis Dash

  49. Recent Admixture in an Indian Population of African Ancestry

    Article • The American Journal of Human Genetics, August 2011, Elsevier

    Debasis Dash

  50. Spectrum of large copy number variations in 26 diverse Indian populations: potential involvement in phenotypic diversity

    Article • Human Genetics, July 2011, Springer Science + Business Media

    Debasis Dash

  51. Open source drug discovery– A new paradigm of collaborative research in tuberculosis drug development

    Article • Tuberculosis, July 2011, Elsevier

    Dr Bhupesh Taneja, Professor Gajendra PS Raghava, Prof Gajendra PS Raghava, Debasis Dash

  52. Recent Admixture in an Indian Population of African Ancestry

    Article • The American Journal of Human Genetics, July 2011, Elsevier

    Debasis Dash

  53. MassWiz: A Novel Scoring Algorithm with Target-Decoy Based Analysis Pipeline for Tandem Mass Spectrometry

    Article • Journal of Proteome Research, May 2011, American Chemical Society (ACS)

    Debasis Dash

  54. A web server for predicting inhibitors against bacterial target GlmU protein

    Article • BMC Pharmacology, January 2011, Springer Science + Business Media

    Professor Gajendra PS Raghava, Prof Gajendra PS Raghava, Debasis Dash

  55. IGVBrowser-a genomic variation resource from diverse Indian populations

    Article • Database, September 2010, Oxford University Press (OUP)

    Debasis Dash

  56. The phenotype and genotype experiment object model (PaGE-OM): a robust data structure for information related to DNA variation

    Article • Human Mutation, June 2009, Hindawi Publishing Corporation

    Debasis Dash

  57. Unraveling the potential of intrinsically disordered proteins as drug targets: application to Mycobacterium tuberculosis

    Article • Molecular BioSystems, January 2009, Royal Society of Chemistry

    Debasis Dash

  58. HGVbaseG2P: a central genetic association database

    Article • Nucleic Acids Research, January 2009, Oxford University Press (OUP)

    Debasis Dash

  59. How expression level influences the disorderness of proteins

    Article • Biochemical and Biophysical Research Communications, July 2008, Elsevier

    Debasis Dash

  60. Genetic landscape of the people of India: a canvas for disease gene exploration

    Article • Journal of Genetics, April 2008, Springer Science + Business Media

    Debasis Dash

  61. Intrinsic disorder in yeast transcriptional regulatory network

    Article • Proteins Structure Function and Bioinformatics, May 2007, Wiley

    Debasis Dash

  62. Dynamic α‐helices: Conformations that do not conform

    Article • Proteins Structure Function and Bioinformatics, April 2007, Wiley

    Debasis Dash

  63. Role of intrinsic disorder in transient interactions of hub proteins

    Article • Proteins Structure Function and Bioinformatics, February 2007, Wiley

    Debasis Dash

  64. Conformational flexibility may explain multiple cellular roles of PEST motifs

    Article • Proteins Structure Function and Bioinformatics, February 2006, Wiley

    Debasis Dash

  65. Intrinsic unstructuredness and abundance of PEST motifs in eukaryotic proteomes

    Article • Proteins Structure Function and Bioinformatics, November 2005, Wiley

    Debasis Dash

  66. The Indian Genome Variation database (IGVdb): a project overview

    Article • Human Genetics, August 2005, Springer Science + Business Media

    Debasis Dash, Prof Gajendra PS Raghava

  67. Conformational Analysis of Invariant Peptide Sequences in Bacterial Genomes

    Article • Journal of Molecular Biology, February 2005, Elsevier

    Debasis Dash

  68. In silico characterization of the INO80 subfamily of SWI2/SNF2 chromatin remodeling proteins

    Article • Biochemical and Biophysical Research Communications, July 2004, Elsevier

    Debasis Dash

  69. Comparative analysis of protein unfoldedness in human housekeeping and non-housekeeping proteins

    Article • Bioinformatics, June 2004, Oxford University Press (OUP)

    Debasis Dash

  70. CoPS: Comprehensive Peptide Signature Database

    Article • Bioinformatics, May 2004, Oxford University Press (OUP)

    Debasis Dash

  71. Recognition and analysis of protein-coding genes in severe acute respiratory syndrome associated coronavirus

    Article • Bioinformatics, February 2004, Oxford University Press (OUP)

    Debasis Dash

  72. Role of histidine interruption in mitigating the pathological effects of long polyglutamine stretches in SCA1: A molecular approach

    Article • Protein Science, May 2003, Wiley

    Debasis Dash

  73. A Novel Complexity Measure for Comparative Analysis of Protein Sequences from Complete Genomes

    Article • Journal of Biomolecular Structure and Dynamics, April 2003, Taylor & Francis

    Debasis Dash

  74. Origin and Instability of GAA Repeats: Insights from Alu Elements

    Article • Journal of Biomolecular Structure and Dynamics, October 2002, Taylor & Francis

    Debasis Dash

  75. Spectrum of β‐thalassemia mutations and their association with allelic sequence polymorphisms at the β‐globin gene cluster in an eastern Indian population

    Article • American Journal of Hematology, July 2002, Wiley

    Debasis Dash

  76. Association of CAG repeat loci on chromosome 22 with schizophrenia and bipolar disorder

    Article • Molecular Psychiatry, October 2001, Springer Science + Business Media

    Professor Vivek Benegal, Debasis Dash

  77. Intramolecular i-motif Structure at Acidic pH for Progressive Myoclonus Epilepsy (EPM1) Repeat d(CCCCGCCCCGCG)n

    Article • Journal of Biomolecular Structure and Dynamics, October 2001, Taylor & Francis

    Debasis Dash

  78. Progressive Myoclonus Epilepsy [EPM1] repeat d(CCCCGCCCCGCG)nforms folded hairpin structures at physiological pH

    Article • Journal of Biomolecular Structure and Dynamics, October 2001, Taylor & Francis

    Debasis Dash