All Stories

  1. Frequency-Guided Cross-Modal Interaction for Multimodal Yeast Classification Based on Light-Scattering and Microscopy Images

    Article • Journal of Imaging, June 2026, MDPI AG

    Dr Daniel Charlebois

  2. Antifungal tolerance and resistance dynamics depend on infection load, drug treatment, and host innate immunity

    Article • June 2026, openRxiv

    Dr Daniel Charlebois

  3. Peering Inside the Black Box: Explainable AI to Interpret Advanced Computer Vision Fungal Pathogen Prediction

    Article • Scientific Reports, April 2026, Springer Science + Business Media

    Dr Daniel Charlebois

  4. Machine Learning-Assisted Classification of Pathogenic Yeasts Using Laser Light Scattering and Conventional Microscopy

    Article • Journal of Imaging, March 2026, MDPI AG

    Dr Daniel Charlebois

  5. Diffusion-mediated quantification of dose-dependent antifungal drug tolerance

    Article • September 2025, Cold Spring Harbor Laboratory Press

    Dr Daniel Charlebois

  6. Peering Inside the Black Box: Explainable AI to Interpret Advanced Computer Vision Fungal Pathogen Prediction

    Article • June 2025, Cold Spring Harbor Laboratory Press

    Dr Daniel Charlebois

  7. Magnetic field platform for experiments on well-mixed and spatially structured microbial populations

    Article • Biophysical Reports, September 2024, Elsevier

    Dr Daniel Charlebois

  8. A Novel Magnetic Field Device: Effects of Magnetic Fields on Planktonic Yeasts and Fungal Mats

    Article • April 2024, Cold Spring Harbor Laboratory Press

    Dr Daniel Charlebois

  9. Fitness effects of a demography-dispersal trade-off in expanding Saccharomyces cerevisiae mats

    Article • Physical Biology, January 2024, Institute of Physics Publishing

    Dr Daniel Charlebois

  10. Machine learning to identify clinically relevant Candida yeast species

    Article • Medical Mycology, December 2023, Oxford University Press (OUP)

    Dr Daniel Charlebois

  11. Machine learning to identify clinically relevantCandidayeast species

    Article • September 2023, Cold Spring Harbor Laboratory Press

    Dr Daniel Charlebois

  12. Quantitative systems-based prediction of antimicrobial resistance evolution

    Article • npj Systems Biology and Applications, September 2023, Springer Science + Business Media

    Dr Daniel Charlebois

  13. Identification and Elimination of Antifungal Tolerance in Candida auris

    Article • Biomedicines, March 2023, MDPI AG

    Dr Daniel Charlebois

  14. Identification and Elimination of Antifungal Tolerance inCandida auris

    Article • December 2022, Cold Spring Harbor Laboratory Press

    Dr Daniel Charlebois

  15. Non-genetic resistance facilitates survival while hindering the evolution of drug resistance due to intraspecific competition

    Article • Physical Biology, September 2022, Institute of Physics Publishing

    Dr Daniel Charlebois

  16. Lattice-based Monte Carlo simulation of the effects of nutrient concentration and magnetic field exposure on yeast colony growth and morphology

    Article • In Silico Biology Journal of Biological Systems Modeling and Multi-Scale Simulation, January 2022, IOS Press

    Dr Daniel Charlebois

  17. Phenotypic Heterogeneity Facilitates Survival While Hindering the Evolution of Drug Resistance Due to Intraspecific Competition

    Article • September 2021, Cold Spring Harbor Laboratory Press

    Dr Daniel Charlebois

  18. Does transcriptional heterogeneity facilitate the development of genetic drug resistance?

    Article • BioEssays, June 2021, Wiley

    Dr Daniel Charlebois

  19. Genetic Network Engineering of Cellular Robustness and Drug Resistance

    Article • Engineering Biology, October 2019, the Institution of Engineering and Technology (the IET)

    Dr Daniel Charlebois

  20. Role of network-mediated stochasticity in mammalian drug resistance

    Article • Nature Communications, June 2019, Springer Science + Business Media

    Dr Daniel Charlebois, Gabor Balazsi

  21. Modeling cell population dynamics

    Article • In Silico Biology Journal of Biological Systems Modeling and Multi-Scale Simulation, May 2019, IOS Press

    Dr Daniel Charlebois, Gabor Balazsi

  22. Multiscale effects of heating and cooling on genes and gene networks

    Article • Proceedings of the National Academy of Sciences, October 2018, Proceedings of the National Academy of Sciences

    Dr Daniel Charlebois, Gabor Balazsi

  23. Negative Regulation Gene Circuits for Efflux Pump Control

    Article • January 2018, Springer Science + Business Media

    Dr Daniel Charlebois, Gabor Balazsi

  24. Frequency‐dependent selection: a diversifying force in microbial populations

    Article • Molecular Systems Biology, August 2016, EMBO

    Dr Daniel Charlebois, Gabor Balazsi

  25. Efflux Pump Control Alters Synthetic Gene Circuit Function

    Article • ACS Synthetic Biology, July 2016, American Chemical Society (ACS)

    Dr Daniel Charlebois, Gabor Balazsi

  26. Effect and evolution of gene expression noise on the fitness landscape

    Article • Physical Review E, August 2015, American Physical Society (APS)

    Dr Daniel Charlebois

  27. Coherent feedforward transcriptional regulatory motifs enhance drug resistance

    Article • Physical Review E, May 2014, American Physical Society (APS)

    Dr Daniel Charlebois, Gabor Balazsi

  28. An Accelerated Method for Simulating Population Dynamics

    Article • Communications in Computational Physics, August 2013, Global Science Press

    Dr Daniel Charlebois

  29. What all the noise is about: the physical basis of cellular individuality

    Article • Canadian Journal of Physics, October 2012, Canadian Science Publishing

    Dr Daniel Charlebois

  30. Gene Expression Noise Facilitates Adaptation and Drug Resistance Independently of Mutation

    Article • Physical Review Letters, November 2011, American Physical Society (APS)

    Dr Daniel Charlebois

  31. An Algorithm for the Stochastic Simulation of Gene Expression and Heterogeneous Population Dynamics

    Article • Communications in Computational Physics, January 2011, Global Science Press

    Dr Daniel Charlebois

  32. Stochastic Gene Expression and the Processing and Propagation of Noisy Signals in Genetic Networks

    Article • January 2011, Springer Science + Business Media

    Dr Daniel Charlebois

  33. CellLine, a stochastic cell lineage simulator

    Article • Bioinformatics, October 2007, Oxford University Press (OUP)

    Dr Daniel Charlebois