All Stories

  1. Withanolides as molecular inhibitors in oral squamous cell carcinoma: unveiling anticancer mechanisms and therapeutic targets

    Article • Phytochemistry Reviews, April 2026, Springer Science + Business Media

    Ashish Runthala

  2. Biotechnology of isopentenols production from microbial cell factories

    Article • Bioresource Technology, February 2026, Elsevier

    Ashish Runthala, Mr Suresh Chandra Phulara

  3. Computational approach for the identification of skeletal muscle-specific AMPK complex (α2β2γ1) activators for type-2 diabetes therapy

    Article • Journal of Applied Biology & Biotechnology, January 2026, Journal of Applied Pharmaceutical Science

    Ashish Runthala

  4. Evaluating Hyper Parameter Sensitivity Across Deep Learning Architectures

    Article • December 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Ashish Runthala

  5. Transformer-Based End-to-End Handwritten Text Recognition on the IAM Dataset

    Article • December 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Ashish Runthala

  6. TrOCR: Transformer-based OCR with Pre-trained Vision-Language Models

    Article • December 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Ashish Runthala

  7. Enhancing Cybersecurity in Connected and Autonomous Vehicles: A CatBoost-Based Ensemble Framework for Multi-Class Threat Detection

    Article • October 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Ashish Runthala

  8. Securing the Future of Transportation: A High-Performance Ensemble Machine Learning Model for Intrusion Detection

    Article • October 2025, Institute of Electrical & Electronics Engineers (IEEE)

    Ashish Runthala

  9. Exploring possible hub genes of metabolic syndrome and type 2 diabetes mellitus: a systematic network biology study

    Article • Scientific Reports, July 2025, Springer Science + Business Media

    Ashish Runthala

  10. Engineering IspH for Enhanced Terpenoid Yield: Computational and Molecular Dynamics Studies

    Article • April 2025, Cold Spring Harbor Laboratory Press

    Ashish Runthala

  11. Multi-Omics Approaches Against Abiotic and Biotic Stress—A Review

    Article • Plants, March 2025, MDPI AG

    Ashish Runthala

  12. Decoding transaminase motifs: Tracing the unknown patterns for enhancing the accuracy of computational screening methodologies

    Article • Gene, February 2025, Elsevier

    Ashish Runthala

  13. Exploring Bacillus Subtilis Isph and its Protein Network: A Key Player for the Biosynthesis of Isoprenoids

    Article • January 2025, Elsevier

    Ashish Runthala

  14. Discovery of Novel R-Selective Aminotransferase Motifs through Computational Screening

    Article • August 2024, Cold Spring Harbor Laboratory Press

    Ashish Runthala

  15. Need for a more accurate phylogeny metaserver

    Article • January 2024, American Institute of Physics

    Ashish Runthala

  16. Refined Evolutionary Trees Through an Exceptionally Compatible Alignment-Substitution Model

    Article • Journal of Applied Biology & Biotechnology, January 2024, Journal of Applied Pharmaceutical Science

    Ashish Runthala

  17. Editorial: Enzyme design methodologies to enhance enzymatic yield

    Article • Frontiers in Bioengineering and Biotechnology, August 2023, Frontiers

    Ashish Runthala

  18. Appraisal of Pancreatic Lipase Inhibitory Potential of Ziziphus oenoplia (L.)Mill. Leaves by In Vitro and In Silico Approaches

    Article • ACS Omega, May 2023, American Chemical Society (ACS)

    Ashish Runthala

  19. Shikimate Kinase Inhibitors: An Update on Promising Strategy against Mycobacterium tuberculosis

    Article • Current Drug Targets, April 2023, Bentham Science Publishers

    Ashish Runthala

  20. Caseins: Versatility of Their Micellar Organization in Relation to the Functional and Nutritional Properties of Milk

    Article • Molecules, February 2023, MDPI AG

    Ashish Runthala

  21. Drugs and a Methodological Compendium

    Article • January 2023, Springer Science + Business Media

    Ashish Runthala

  22. Optical biosensors for diabetes management: Advancing into stimuli-responsive sensing mechanisms

    Article • Smart Materials in Medicine, January 2023, Elsevier

    Ashish Runthala

  23. In Silico Identification of Potential Antivirals Against SARS-CoV-2 Main Protease and RBD of Spike Protein: A Drug Repurposing Approach

    Article • January 2023, Springer Science + Business Media

    Ashish Runthala

  24. Unlocking Isoprenoid Biosynthesis: Enhancing Isph Activity for Industrial Productivity and Compound Diversification

    Article • January 2023, Elsevier

    Ashish Runthala

  25. Type-2 diabetes mellitus-associated cancer risk: In pursuit of understanding the possible link

    Article • Diabetes & Metabolic Syndrome Clinical Research & Reviews, September 2022, Elsevier

    Ashish Runthala

  26. Computationally Decoding NudF Residues To Enhance the Yield of the DXP Pathway

    Article • ACS Omega, May 2022, American Chemical Society (ACS)

    Ashish Runthala

  27. NudF-boosted strategy to improve the yield of DXS pathway

    Article • March 2022, Cold Spring Harbor Laboratory Press

    Ashish Runthala

  28. Computational and Synthetic Biology Approaches for the Biosynthesis of Antiviral and Anticancer Terpenoids from Bacillus subtilis

    Article • Medicinal Chemistry, March 2022, Bentham Science Publishers

    Mr Suresh Chandra Phulara, Ashish Runthala

  29. Cis Elements: Added Boost to the Directed Evolution of Plant Genes

    Article • Journal of Pure and Applied Microbiology, February 2022, Journal of Pure and Applied Microbiology

    Dr. W Sridhar, Ashish Runthala

  30. Accurate computational evolution of proteins and its dependence on deep learning and machine learning strategies

    Article • Biocatalysis and Biotransformation, January 2022, Taylor & Francis

    Ashish Runthala

  31. Current strategic limitations of phylogenetic tools badly impact the inference of an evolutionary tree

    Article • January 2021, Cold Spring Harbor Laboratory Press

    Ashish Runthala

  32. Probabilistic divergence of a template-based modelling methodology from the ideal protocol

    Article • Journal of Molecular Modeling, January 2021, Springer Science + Business Media

    Ashish Runthala

  33. Excavating the functionally crucial active-site residues of the DXS protein of Bacillus subtilis by exploring its closest homologues

    Article • Journal of Genetic Engineering and Biotechnology, November 2020, Springer Science + Business Media

    Ashish Runthala

  34. Probabilistic divergence of a TBM methodology from the ideal protocol

    Article • July 2020, Cold Spring Harbor Laboratory Press

    Ashish Runthala

  35. Decoding the vital segments in human ATP-dependent RNA helicase

    Article • Bioinformation, February 2020, Biomedical Informatics

    Ashish Runthala

  36. Metabolic and Enzyme Engineering for the Microbial Production of Anticancer Terpenoids

    Article • January 2020, Springer Science + Business Media

    Ashish Runthala, Mr Suresh Chandra Phulara

  37. Evaluation of specificity determinants in Mycobacterium tuberculosis σ/anti-σ factor interactions

    Article • Biochemical and Biophysical Research Communications, January 2020, Elsevier

    Ashish Runthala

  38. Addition of insoluble fiber to isolation media allows for increased metabolite diversity of lab-cultivable microbes derived from zebrafish gut samples

    Article • November 2019, openRxiv

    Ashish Runthala

  39. Hyperglycemia enhances cancer immune evasion by inducing alternative macrophage polarization through increased O-GlcNAcylation

    Article • November 2019, openRxiv

    Ashish Runthala

  40. Expanding the Zebrafish Genetic Code through Site-Specific Introduction of Azido-lysine, Bicyclononyne-lysine, and Diazirine-lysine

    Article • May 2019, openRxiv

    Ashish Runthala

  41. Refined template selection and combination algorithm significantly improves template-based modeling accuracy

    Article • Journal of Bioinformatics and Computational Biology, April 2019, World Scientific Pub Co Pte Lt

    Ashish Runthala

  42. In Silico-Directed Evolution Using CADEE

    Article • September 2018, Springer Science + Business Media

    Ashish Runthala, Shina Caroline Lynn Kamerlin

  43. Quantitative proteomics analysis reveals the tolerance of wheat to salt stress in response to Enterobacter cloacae SBP-8

    Article • PLOS One, September 2017, PLOS

    Ashish Runthala

  44. - Metabolic Engineering: Dimensions and Applications

    Article • April 2016, Taylor & Francis

    Ashish Runthala

  45. Quick Reliable Exploration of the PDB Universe Seeks a New Template Search Algorithm

    Article • Journal of Data Mining in Genomics & Proteomics, January 2016, OMICS Publishing Group

    Ashish Runthala

  46. Unsolved Problems of Ambient Computationally Intelligent TBM Algorithms

    Article • August 2015, Springer Science + Business Media

    Ashish Runthala

  47. Functionally Tolerable Mutations Incorporated in Proteins Guides the Evolution Process

    Article • Journal of Investigative Genomics, July 2015, MedCrave Group LLC

    Ashish Runthala

  48. Non-Linear and Misleading Template Scoring Criteria: Root Cause of Protein Modelling Inaccuracies

    Article • Current Synthetic and Systems Biology, January 2015, OMICS Publishing Group

    Ashish Runthala

  49. Protein Structure Prediction: Are We There Yet?

    Article • January 2013, Springer Science + Business Media

    Ashish Runthala

  50. Tolerable environmentally inverse constrained functional metabolism: Key to fight obesity

    Article • Russian Open Medical Journal, December 2012, LLC Science and Innovations

    Ashish Runthala

  51. Protein structure prediction: challenging targets for CASP10

    Article • Journal of Biomolecular Structure and Dynamics, September 2012, Taylor & Francis

    Ashish Runthala

  52. Hunting Drugs for Potent Antigens in the Silicon Valley

    Article • IGI Global

    Ashish Runthala