All Stories

  1. Viral non-coding RNA structure annotation and API-based data retrieval with Rfam and R2DT

    Article • May 2026, openRxiv

    Dr Anton Petrov

  2. Expansion of the tmRNA sequence database and new tools for search and visualization

    Article • NAR Genomics and Bioinformatics, January 2025, Oxford University Press (OUP)

    Dr Anton Petrov

  3. LitSumm: large language models for literature summarization of noncoding RNAs

    Article • Database, January 2025, Oxford University Press (OUP)

    Dr Anton Petrov

  4. Rfam 15: RNA families database in 2025

    Article • Nucleic Acids Research, November 2024, Oxford University Press (OUP)

    Dr Anton Petrov

  5. Rfam 15: RNA families database in 2025

    Article • September 2024, Cold Spring Harbor Laboratory Press

    Dr Anton Petrov

  6. Comprehensive Survey of Conserved RNA Secondary Structures in Full-Genome Alignment of Hepatitis C Virus

    Article • November 2023, Cold Spring Harbor Laboratory Press

    Dr Anton Petrov

  7. The European Bioinformatics Institute (EMBL-EBI) in 2021

    Article • Nucleic Acids Research, November 2021, Oxford University Press (OUP)

    Dr Anton Petrov, Catherine Brooksbank

  8. R2DT is a framework for predicting and visualising RNA secondary structure using templates

    Article • Nature Communications, June 2021, Springer Science + Business Media

    Dr Anton Petrov

  9. Rfam 14: expanded coverage of metagenomic, viral and microRNA families

    Article • Nucleic Acids Research, November 2020, Oxford University Press (OUP)

    Dr Anton Petrov

  10. Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

    Article • Briefings in Bioinformatics, November 2020, Oxford University Press (OUP)

    Dr Anton Petrov, Max von Kleist

  11. RNAcentral 2021: secondary structure integration, improved sequence search and new member databases

    Article • Nucleic Acids Research, October 2020, Oxford University Press (OUP)

    Dr Anton Petrov

  12. R2DT: computational framework for template-based RNA secondary structure visualisation across non-coding RNA types

    Article • September 2020, Cold Spring Harbor Laboratory Press

    Dr Anton Petrov

  13. Exploring Non‐Coding RNAs in RNAcentral

    Article • Current Protocols in Bioinformatics, August 2020, Wiley

    Dr Anton Petrov

  14. RNAcentral: a hub of information for non-coding RNA sequences

    Article • Nucleic Acids Research, December 2018, Oxford University Press (OUP)

    Dr Anton Petrov

  15. RNAcentral: a hub of information for non-coding RNA sequences

    Article • Nucleic Acids Research, November 2018, Oxford University Press (OUP)

    Dr Anton Petrov

  16. Non-Coding RNA Analysis Using the Rfam Database

    Article • Current Protocols in Bioinformatics, June 2018, Wiley

    Dr Anton Petrov

  17. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

    Article • Nucleic Acids Research, November 2017, Oxford University Press (OUP)

    Dr Anton Petrov

  18. JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs

    Article • Nucleic Acids Research, May 2016, Oxford University Press (OUP)

    Dr Anton Petrov

  19. Identifying novel sequence variants of RNA 3D motifs

    Article • Nucleic Acids Research, June 2015, Oxford University Press (OUP)

    Dr Anton Petrov

  20. R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server

    Article • Nucleic Acids Research, June 2015, Oxford University Press (OUP)

    Dr Anton Petrov

  21. RNAcentral: an international database of ncRNA sequences

    Article • Nucleic Acids Research, October 2014, Oxford University Press (OUP)

    Dr Anton Petrov

  22. Automated classification of RNA 3D motifs and the RNA 3D Motif Atlas

    Article • RNA, August 2013, Cold Spring Harbor Laboratory Press

    Dr Anton Petrov

  23. R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures

    Article • Nucleic Acids Research, May 2013, Oxford University Press (OUP)

    Dr Anton Petrov

  24. Comprehensive survey and geometric classification of base triples in RNA structures

    Article • Nucleic Acids Research, November 2011, Oxford University Press (OUP)

    Dr Anton Petrov

  25. WebFR3D--a server for finding, aligning and analyzing recurrent RNA 3D motifs

    Article • Nucleic Acids Research, April 2011, Oxford University Press (OUP)

    Dr Anton Petrov

  26. A Three-Dimensional RNA Motif in Potato spindle tuber viroid Mediates Trafficking from Palisade Mesophyll to Spongy Mesophyll in Nicotiana benthamiana

    Article • The Plant Cell, January 2011, American Society of Plant Biologists (ASPB)

    Dr Anton Petrov

  27. Quantum Chemical Studies of Nucleic Acids: Can We Construct a Bridge to the RNA Structural Biology and Bioinformatics Communities?

    Article • The Journal of Physical Chemistry B, December 2010, American Chemical Society (ACS)

    Dr Anton Petrov

  28. Understanding Sequence Variability of RNA Motifs Using Geometric Search and IsoDiscrepancy Matrices

    Article • June 2009, Institute of Electrical & Electronics Engineers (IEEE)

    Dr Anton Petrov

  29. 15. Analyzing, searching, and annotating recurrent RNA three-dimensional motifs

    Article • De Gruyter

    Dr Anton Petrov